iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129946

Ensembl Protein ID

EGY19310

UniProt Accession

G2XHL6; G2XHL6_VERDV

Genbank Protein ID

EGY19310.1

Protein Name

Nucleotide excision repair protein RAD23

Genbank Nucleotide ID

DS572721

Gene Name

VDAG_09770

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_09770	EGY19310	EGY19310

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	9.40e-20	69.2	143	181
ULD/UDP/UBQ/UBQ_PIM	6.20e-23	79.7	1	75

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLldg 41
           + ++++++++MGF+r+++  aLraa++n+++AveyLl+g
   Q: 143  RAEVVANMEAMGFERSQIDAALRAAFYNPDRAVEYLLTG 181
           5689*********************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk+t+k lk+++f+l+v++ d ++ +K++i++e+g ++++qkLIy+GkiLkD++t+++++i+++ +v+++++k+k
   Q: 1    MKVTFKDLKQNKFTLDVEPTDLISTVKQRISEEKGWDAKEQKLIYSGKILKDEETVESYKIEEKGFVVCMIQKPK 75
           99*********************************************************************9987 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MKVTFKDLKQ NKFTLDVEPT DLISTVKQRI SEEKGWDAKE QKLIYSGKIL KDEETVESYK 60
IEEKGFVVCM IQKPKAKPAA PAASSSAVPS TPAQPVAATP AVPAAPQAST QAAVPSTPTP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACACCACCC TATATCCTGC ATTGCAGACT GCTGGCCCTT CTCCGCCGTC CCAGCTTCAC 60
CTCGAGCCGA CTCACCTCAC ATTCTCCCAC CGACCTCTGT AGCTCCGAGC TGCACCCTGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005635--C:nuclear envelope
GO:0000111--C:nucleotide-excision repair factor 2 complex
GO:0000502--C:proteasome complex
GO:0003684--F:damaged DNA binding
GO:0000224--F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity
GO:0042177--P:negative regulation of protein catabolic process
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0006289--P:nucleotide-excision repair
GO:0006517--P:protein deglycosylation
GO:0016567--P:protein ubiquitination
GO:0030433--P:ubiquitin-dependent ERAD pathway

KEGG

vda:VDAG_09770

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	48.18	3.00e-21	94.40
IUUC-Aml-001195	Ailuropoda melanoleuca	41.07	4.00e-16	77.00
IUUC-Atr-002756	Amborella trichopoda	31.89	4.00e-17	80.10
IUUC-Apl-003371	Anas platyrhynchos	43.86	2.00e-17	81.60
IUUC-Aca-004599	Anolis carolinensis	39.02	7.00e-16	76.60
IUUC-Aly-005486	Arabidopsis lyrata	48.46	8.00e-24	102.00
IUUC-Ath-006688	Arabidopsis thaliana	49.23	1.00e-23	102.00
IUUC-Ago-007830	Ashbya gossypii	35.98	3.00e-23	100.00
IUUC-Acl-008212	Aspergillus clavatus	76.86	1.00e-39	155.00
IUUC-Afl-008605	Aspergillus flavus	72.95	5.00e-37	146.00
IUUC-Afu-008877	Aspergillus fumigatus	77.69	6.00e-40	156.00
IUUC-Ani-009460	Aspergillus nidulans	72.73	4.00e-36	143.00
IUUC-Aor-010032	Aspergillus oryzae	72.95	5.00e-37	146.00
IUUC-Ate-010458	Aspergillus terreus	52.81	9.00e-52	195.00
IUUC-Ame-011704	Astyanax mexicanus	36.55	3.00e-09	53.10
IUUC-Bgr-012056	Blumeria graminis	79.17	2.00e-36	144.00
IUUC-Bta-012377	Bos taurus	44.90	1.00e-15	75.50
IUUC-Bci-013933	Botrytis cinerea	59.08	8.00e-92	328.00
IUUC-Bdi-014355	Brachypodium distachyon	48.85	4.00e-23	100.00
IUUC-Bol-015354	Brassica oleracea	48.46	3.00e-23	100.00
IUUC-Bra-016769	Brassica rapa	48.46	5.00e-23	100.00
IUUC-Cel-018364	Caenorhabditis elegans	57.78	2.00e-10	58.20
IUUC-Cja-018946	Callithrix jacchus	44.90	2.00e-15	74.70
IUUC-Cfa-020683	Canis familiaris	41.07	3.00e-16	77.40
IUUC-Cpo-022145	Cavia porcellus	46.67	1.00e-17	82.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	42.98	7.00e-14	69.70
IUUC-Csa-023183	Chlorocebus sabaeus	44.90	1.00e-15	75.50
IUUC-Cho-024814	Choloepus hoffmanni	45.52	1.00e-16	78.60
IUUC-Cin-025741	Ciona intestinalis	39.39	1.00e-14	72.00
IUUC-Csv-025823	Ciona savignyi	35.42	6.00e-23	99.40
IUUC-Cgl-026495	Colletotrichum gloeosporioides	66.67	8.00e-57	212.00
IUUC-Cne-027056	Cryptococcus neoformans	45.07	1.00e-14	72.40
IUUC-Cme-027260	Cyanidioschyzon merolae	27.06	6.00e-10	57.00
IUUC-Dre-028369	Danio rerio	46.51	9.00e-19	85.90
IUUC-Dno-029543	Dasypus novemcinctus	41.96	3.00e-16	77.80
IUUC-Dor-030358	Dipodomys ordii	44.90	1.00e-15	75.10
IUUC-Dse-031336	Dothistroma septosporum	80.17	7.00e-45	172.00
IUUC-Dme-032027	Drosophila melanogaster	29.15	2.00e-21	95.10
IUUC-Ete-032583	Echinops telfairi	41.07	4.00e-16	77.40
IUUC-Eca-034243	Equus caballus	41.96	3.00e-16	77.40
IUUC-Eeu-034721	Erinaceus europaeus	52.00	4.00e-10	57.00
IUUC-Fca-035679	Felis catus	41.07	4.00e-16	77.00
IUUC-Fal-037148	Ficedula albicollis	42.98	7.00e-17	79.70
IUUC-Fox-037960	Fusarium oxysporum	69.95	4.00e-105	372.00
IUUC-Fso-038107	Fusarium solani	72.36	1.00e-110	390.00
IUUC-Gmo-038751	Gadus morhua	42.03	5.00e-19	86.30
IUUC-Ggr-040116	Gaeumannomyces graminis	93.55	1.00e-53	201.00
IUUC-Gga-040133	Gallus gallus	60.00	8.00e-13	65.90
IUUC-Gac-041621	Gasterosteus aculeatus	49.23	1.00e-17	82.40
IUUC-Gma-044370	Glycine max	43.24	9.00e-12	62.80
IUUC-Ggo-045084	Gorilla gorilla	44.90	2.00e-15	74.70
IUUC-Hsa-046614	Homo sapiens	44.90	1.00e-15	75.50
IUUC-Hvu-047832	Hordeum vulgare	48.18	1.00e-21	95.50
IUUC-Itr-048295	Ictidomys tridecemlineatus	41.07	3.00e-16	77.80
IUUC-Kpa-049314	Komagataella pastoris	33.88	1.00e-25	108.00
IUUC-Lch-050553	Latimeria chalumnae	48.54	1.00e-13	68.90
IUUC-Lpe-050929	Leersia perrieri	39.19	2.00e-11	62.00
IUUC-Loc-051758	Lepisosteus oculatus	38.04	6.00e-20	89.70
IUUC-Lma-053328	Leptosphaeria maculans	66.20	2.00e-24	101.00
IUUC-Laf-054293	Loxodonta africana	41.96	3.00e-16	77.40
IUUC-Mcc-055860	Macaca mulatta	44.90	1.00e-15	75.50
IUUC-Meu-056082	Macropus eugenii	41.44	3.00e-16	77.40
IUUC-Mor-057287	Magnaporthe oryzae	60.32	1.00e-52	198.00
IUUC-Mpo-057609	Magnaporthe poae	94.92	2.00e-52	197.00
IUUC-Mtr-058148	Medicago truncatula	44.59	5.00e-12	63.50
IUUC-Mla-058961	Melampsora laricipopulina	45.11	6.00e-19	86.70
IUUC-Mvi-060220	Microbotryum violaceum	41.23	2.00e-15	75.50
IUUC-Mmr-060819	Microcebus murinus	32.86	1.00e-22	99.00
IUUC-Mdo-062742	Monodelphis domestica	48.48	9.00e-20	89.40
IUUC-Mmu-063258	Mus musculus	42.47	5.00e-16	77.00
IUUC-Mac-064724	Musa acuminata	47.24	2.00e-22	98.20
IUUC-Mpu-066389	Mustela putorius furo	41.96	2.00e-16	78.20
IUUC-Mlu-067999	Myotis lucifugus	40.35	7.00e-16	76.60
IUUC-Nfi-068390	Neosartorya fischeri	77.69	7.00e-40	155.00
IUUC-Ncr-068685	Neurospora crassa	59.56	1.00e-57	214.00
IUUC-Nle-069846	Nomascus leucogenys	43.16	2.00e-13	67.80
IUUC-Ont-072484	Oreochromis niloticus	46.51	7.00e-17	79.70
IUUC-Oan-073572	Ornithorhynchus anatinus	35.86	1.00e-21	95.10
IUUC-Ocu-074831	Oryctolagus cuniculus	40.71	2.00e-16	78.20
IUUC-Oba-075872	Oryza barthii	47.33	1.00e-21	95.90
IUUC-Obr-076909	Oryza brachyantha	46.56	6.00e-22	96.30
IUUC-Ogl-077021	Oryza glaberrima	47.33	1.00e-21	95.90
IUUC-Ogu-078101	Oryza glumaepatula	47.33	1.00e-21	95.90
IUUC-Oin-079727	Oryza indica	47.33	1.00e-21	95.90
IUUC-Olo-080382	Oryza longistaminata	47.33	1.00e-21	95.50
IUUC-Ome-081652	Oryza meridionalis	46.97	9.00e-22	95.90
IUUC-Oni-082847	Oryza nivara	47.33	1.00e-21	95.90
IUUC-Opu-083789	Oryza punctata	47.33	8.00e-22	95.90
IUUC-Oru-085266	Oryza rufipogon	47.33	3.00e-21	94.40
IUUC-Osa-085951	Oryza sativa	46.56	4.00e-22	97.10
IUUC-Ola-086540	Oryzias latipes	41.78	4.00e-15	73.90
IUUC-Olu-087843	Ostreococcus lucimarinus	39.57	2.00e-21	94.40
IUUC-Oga-089075	Otolemur garnettii	33.80	3.00e-22	97.40
IUUC-Oar-090387	Ovis aries	44.90	2.00e-15	74.70
IUUC-Ptr-091165	Pan troglodytes	41.96	3.00e-16	77.40
IUUC-Pan-092140	Papio anubis	44.90	2.00e-15	75.10
IUUC-Psi-093477	Pelodiscus sinensis	42.57	3.00e-13	67.40
IUUC-Pno-095064	Phaeosphaeria nodorum	83.81	2.00e-30	124.00
IUUC-Ppa-095654	Physcomitrella patens	48.46	7.00e-21	92.80
IUUC-Pfo-096607	Poecilia formosa	42.00	6.00e-14	70.10
IUUC-Pab-097868	Pongo abelii	41.96	3.00e-16	77.00
IUUC-Pop-099416	Populus trichocarpa	50.00	3.00e-22	97.40
IUUC-Pca-100652	Procavia capensis	54.00	6.00e-11	59.70
IUUC-Ppe-101830	Prunus persica	51.59	1.00e-22	99.00
IUUC-Pva-102137	Pteropus vampyrus	41.96	3.00e-16	77.80
IUUC-Pgr-103641	Puccinia graminis	47.00	2.00e-16	78.60
IUUC-Ptt-103717	Puccinia triticina	52.27	2.00e-25	108.00
IUUC-Pte-104303	Pyrenophora teres	84.43	4.00e-48	183.00
IUUC-Pyt-104580	Pyrenophora triticirepentis	84.43	4.00e-48	183.00
IUUC-Rno-104844	Rattus norvegicus	43.57	8.00e-16	76.30
IUUC-Sce-106214	Saccharomyces cerevisiae	38.21	4.00e-15	73.90
IUUC-Sha-107073	Sarcophilus harrisii	41.44	4.00e-16	77.40
IUUC-Sja-107851	Schizosaccharomyces japonicus	40.41	6.00e-35	139.00
IUUC-Spo-108298	Schizosaccharomyces pombe	43.30	3.00e-30	123.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	54.12	1.00e-47	181.00
IUUC-Smo-109129	Selaginella moellendorffii	54.69	3.00e-19	87.80
IUUC-Sit-110694	Setaria italica	36.08	1.00e-11	62.80
IUUC-Sly-111480	Solanum lycopersicum	53.97	1.00e-24	105.00
IUUC-Stu-112054	Solanum tuberosum	53.17	4.00e-24	103.00
IUUC-Sar-112925	Sorex araneus	41.96	3.00e-16	77.40
IUUC-Sbi-113871	Sorghum bicolor	47.69	2.00e-21	94.70
IUUC-Sre-114894	Sporisorium reilianum	45.07	6.00e-13	66.60
IUUC-Ssc-116329	Sus scrofa	41.96	3.00e-16	77.80
IUUC-Tgu-116918	Taeniopygia guttata	42.98	7.00e-17	79.70
IUUC-Tru-117920	Takifugu rubripes	47.20	8.00e-19	86.30
IUUC-Tsy-118836	Tarsius syrichta	41.07	3.00e-16	77.40
IUUC-Tni-120493	Tetraodon nigroviridis	47.20	3.00e-18	84.30
IUUC-Tca-121617	Theobroma cacao	50.00	9.00e-22	96.30
IUUC-Tre-121911	Trichoderma reesei	62.89	7.00e-90	322.00
IUUC-Tvi-122617	Trichoderma virens	61.52	3.00e-89	320.00
IUUC-Tae-125346	Triticum aestivum	50.00	7.00e-23	99.40
IUUC-Tur-126610	Triticum urartu	48.18	2.00e-21	95.90
IUUC-Tme-127092	Tuber melanosporum	51.98	4.00e-45	173.00
IUUC-Tbe-127493	Tupaia belangeri	41.96	4.00e-16	77.00
IUUC-Ttr-128464	Tursiops truncatus	41.96	4.00e-16	77.40
IUUC-Uma-129484	Ustilago maydis	47.89	8.00e-14	69.70
IUUC-Vpa-130357	Vicugna pacos	54.00	5.00e-11	60.10
IUUC-Vvi-131039	Vitis vinifera	48.78	2.00e-21	94.70
IUUC-Xtr-132679	Xenopus tropicalis	44.59	2.00e-13	68.20
IUUC-Xma-133503	Xiphophorus maculatus	44.53	3.00e-18	84.00
IUUC-Yli-134615	Yarrowia lipolytica	37.38	1.00e-24	105.00
IUUC-Zma-135929	Zea mays	46.56	1.00e-21	95.50

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence