iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099815

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_649204; POPTR_0009s13810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s13810	POPTR_0009s13810.1	POPTR_0009s13810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/SCF/SKP1	1.90e-28	99.5	109	156

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/SKP1

   S: 1    ksLLdltcktVadmikgktpeeiRktFnienDftpeEeakvReEnqWA 48
           k LLdltc++ admikgktp+eiRk Fni+nDftpeEe+++R+ nqWA
   Q: 109  KDLLDLTCQAAADMIKGKTPDEIRKIFNIKNDFTPEEEEEIRRDNQWA 156
           78*********************************************9 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSESKKITLK SSDGETFVVE EAVAVESQTI KHMIEDDCAE NDIPLPNVTS KILAKVIEYC 60
KKHVEADADK DATITGKDEF MKSWDAEFVK VDKNTLFDLI LAANYLNIKD LLDLTCQAAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCTTTCCC AATATGTCAG AATCAAAGAA AATCACGCTA AAATCCTCCG ACGGCGAGAC 60
ATTCGTTGTC GAAGAAGCGG TCGCCGTTGA GTCACAGACC ATCAAACATA TGATTGAAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0436--Ligase
KW-1185--Reference proteome

Interpro

IPR016897--SKP1
IPR001232--SKP1-like
IPR011333--SKP1/BTB/POZ
IPR016072--Skp1_comp_dimer
IPR016073--Skp1_comp_POZ

Pfam

PF01466--Skp1
PF03931--Skp1_POZ

SMART

SM00512--Skp1

Gene Ontology

GO:0016874--F:ligase activity
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0009s13810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007515	Arabidopsis thaliana	69.33	4.00e-62	229.00
IUUC-Ago-007847	Ashbya gossypii	41.81	8.00e-34	135.00
IUUC-Afl-008452	Aspergillus flavus	49.69	7.00e-39	152.00
IUUC-Ani-009312	Aspergillus nidulans	47.44	4.00e-37	146.00
IUUC-Aor-010012	Aspergillus oryzae	49.69	7.00e-39	152.00
IUUC-Cne-027058	Cryptococcus neoformans	51.22	4.00e-41	159.00
IUUC-Hvu-047497	Hordeum vulgare	71.43	5.00e-57	213.00
IUUC-Mvi-060342	Microbotryum violaceum	51.90	1.00e-40	158.00
IUUC-Olo-080619	Oryza longistaminata	57.86	2.00e-48	184.00
IUUC-Ppe-101410	Prunus persica	73.08	4.00e-63	233.00
IUUC-Sce-106387	Saccharomyces cerevisiae	53.91	1.00e-32	132.00
IUUC-Sja-107902	Schizosaccharomyces japonicus	49.36	2.00e-38	150.00
IUUC-Sbi-114394	Sorghum bicolor	72.05	6.00e-55	205.00
IUUC-Sre-115178	Sporisorium reilianum	51.30	9.00e-41	158.00
IUUC-Tur-126793	Triticum urartu	74.84	4.00e-63	232.00
IUUC-Tme-127078	Tuber melanosporum	52.50	4.00e-37	146.00
IUUC-Uma-129517	Ustilago maydis	50.65	1.00e-38	151.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence