iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-106100

Ensembl Protein ID

ENSRNOP00000026033.3

UniProt Accession

F1MA52; F1MA52_RAT

Genbank Protein ID

ENSRNOP00000026033

Protein Name

Nuclear RNA export factor 1

Genbank Nucleotide ID

AC099294

Gene Name

Nxf1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000019069.4	ENSRNOT00000026033.4	ENSRNOP00000026033.3

Annotation

mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	miRNAMap	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBA	23.86	3.00e-10	62.00	IUUC-Sce-106429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MADEGKSYNE HDDRVSFPQR RKKGRGPFRW KCGEGNRRSG RGGSGIRSSR FEEDDGDVAM 60
NDPQDGPRVR YNPYTSRPNR RRDTWHDRDR IHVTVRRDRA PQERGGAGTS QDGTTKNWFK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGCTTCTGT CCTGAGCGCC AAGGCGTCCG GGTGTTTGGT GGCGTCAGGT TCTGCGCCTG 60
AGCCCGCCCC TGTACCTGCC TGTGCCATGG CGGACGAAGG GAAGTCATAC AACGGTTAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR032675--L_dom-like
IPR001611--Leu-rich_rpt
IPR002075--NTF2
IPR032710--NTF2-like_dom
IPR018222--Nuclear_transport_factor_2_euk
IPR012677--Nucleotide-bd_a/b_plait
IPR030217--NXF_fam
IPR000504--RRM_dom
IPR005637--TAP_C_dom
IPR015245--Tap_RNA-bd
IPR009060--UBA-like

PROSITE

PS51450--LRR
PS50177--NTF2_DOMAIN
PS51281--TAP_C

Pfam

PF02136--NTF2
PF09162--Tap-RNA_bind
PF03943--TAP_C

SMART

SM00804--TAP_C

Gene Ontology

GO:0005737--C:cytoplasm
GO:0042405--C:nuclear inclusion body
GO:0005643--C:nuclear pore
GO:0016607--C:nuclear speck
GO:0000346--C:transcription export complex
GO:0003729--F:mRNA binding
GO:0005487--F:nucleocytoplasmic transporter activity
GO:0000166--F:nucleotide binding
GO:0003727--F:single-stranded RNA binding
GO:0016973--P:poly(A)+ mRNA export from nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001516	Ailuropoda melanoleuca	89.17	0.00e+00	1036.00
IUUC-Apl-003526	Anas platyrhynchos	33.33	5.00e-03	34.70
IUUC-Aca-005187	Anolis carolinensis	66.08	0.00e+00	711.00
IUUC-Ago-007780	Ashbya gossypii	25.40	2.00e-17	84.00
IUUC-Acl-008191	Aspergillus clavatus	25.32	8.00e-22	99.00
IUUC-Afl-008512	Aspergillus flavus	26.55	2.00e-25	110.00
IUUC-Afu-009048	Aspergillus fumigatus	26.25	2.00e-26	114.00
IUUC-Ani-009320	Aspergillus nidulans	23.79	4.00e-15	76.60
IUUC-Ang-009834	Aspergillus niger	25.83	2.00e-21	97.10
IUUC-Aor-010039	Aspergillus oryzae	26.10	1.00e-21	98.20
IUUC-Ate-010321	Aspergillus terreus	26.07	5.00e-20	93.20
IUUC-Ame-011034	Astyanax mexicanus	56.98	0.00e+00	637.00
IUUC-Bgr-012142	Blumeria graminis	26.57	3.00e-19	90.50
IUUC-Bta-013268	Bos taurus	89.03	0.00e+00	1014.00
IUUC-Bci-013951	Botrytis cinerea	27.27	5.00e-21	96.30
IUUC-Cel-018213	Caenorhabditis elegans	32.58	4.60e-02	31.20
IUUC-Cja-019064	Callithrix jacchus	92.25	0.00e+00	1054.00
IUUC-Cfa-020712	Canis familiaris	89.41	0.00e+00	998.00
IUUC-Cpo-021814	Cavia porcellus	92.07	0.00e+00	1056.00
IUUC-Csa-023652	Chlorocebus sabaeus	92.41	0.00e+00	1061.00
IUUC-Cho-024546	Choloepus hoffmanni	54.55	1.90e-02	32.70
IUUC-Cin-025669	Ciona intestinalis	35.10	2.00e-95	343.00
IUUC-Csv-025957	Ciona savignyi	34.59	2.00e-83	302.00
IUUC-Cgl-026395	Colletotrichum gloeosporioides	26.73	9.00e-27	115.00
IUUC-Cne-026967	Cryptococcus neoformans	22.35	1.00e-03	38.10
IUUC-Dre-028476	Danio rerio	53.91	3.00e-149	521.00
IUUC-Dno-029301	Dasypus novemcinctus	89.64	0.00e+00	1017.00
IUUC-Dor-030764	Dipodomys ordii	92.08	0.00e+00	1051.00
IUUC-Dse-031489	Dothistroma septosporum	24.09	6.00e-16	79.30
IUUC-Dme-031623	Drosophila melanogaster	31.99	3.00e-77	283.00
IUUC-Ete-032992	Echinops telfairi	76.02	0.00e+00	783.00
IUUC-Eca-033208	Equus caballus	90.70	0.00e+00	989.00
IUUC-Eeu-034759	Erinaceus europaeus	89.00	0.00e+00	1031.00
IUUC-Fca-035671	Felis catus	91.26	0.00e+00	1048.00
IUUC-Fal-036625	Ficedula albicollis	34.09	7.00e-03	34.30
IUUC-Fox-037892	Fusarium oxysporum	27.68	4.00e-21	96.70
IUUC-Fso-038402	Fusarium solani	27.49	7.00e-22	99.00
IUUC-Gmo-039325	Gadus morhua	54.96	1.00e-149	523.00
IUUC-Ggr-039736	Gaeumannomyces graminis	23.91	6.00e-10	59.30
IUUC-Gga-040508	Gallus gallus	70.05	0.00e+00	761.00
IUUC-Gac-041798	Gasterosteus aculeatus	56.96	0.00e+00	684.00
IUUC-Ggo-044655	Gorilla gorilla	91.94	0.00e+00	1027.00
IUUC-Hsa-047028	Homo sapiens	92.57	0.00e+00	1061.00
IUUC-Itr-048415	Ictidomys tridecemlineatus	89.98	0.00e+00	1055.00
IUUC-Kpa-049280	Komagataella pastoris	23.66	7.00e-21	95.50
IUUC-Lch-049501	Latimeria chalumnae	69.11	0.00e+00	818.00
IUUC-Loc-052299	Lepisosteus oculatus	62.95	3.00e-169	588.00
IUUC-Laf-053523	Loxodonta africana	89.48	0.00e+00	1039.00
IUUC-Mcc-055389	Macaca mulatta	92.84	0.00e+00	990.00
IUUC-Meu-056620	Macropus eugenii	58.12	5.00e-140	490.00
IUUC-Mor-057232	Magnaporthe oryzae	27.79	2.00e-24	107.00
IUUC-Mpo-057539	Magnaporthe poae	23.69	2.00e-09	58.20
IUUC-Mla-059053	Melampsora laricipopulina	25.44	7.00e-24	105.00
IUUC-Mga-059220	Meleagris gallopavo	33.33	6.00e-03	34.70
IUUC-Mvi-060283	Microbotryum violaceum	26.10	6.00e-21	95.90
IUUC-Mmr-061583	Microcebus murinus	93.04	0.00e+00	1071.00
IUUC-Mdo-062158	Monodelphis domestica	79.19	0.00e+00	924.00
IUUC-Mmu-064202	Mus musculus	92.56	0.00e+00	1051.00
IUUC-Mpu-065730	Mustela putorius furo	90.94	0.00e+00	1043.00
IUUC-Mlu-066975	Myotis lucifugus	88.23	0.00e+00	983.00
IUUC-Nfi-068368	Neosartorya fischeri	26.25	1.00e-24	108.00
IUUC-Ncr-068724	Neurospora crassa	24.95	5.00e-14	72.80
IUUC-Nle-069816	Nomascus leucogenys	92.25	0.00e+00	1052.00
IUUC-Opr-070244	Ochotona princeps	42.63	2.00e-125	442.00
IUUC-Ont-072608	Oreochromis niloticus	56.98	0.00e+00	702.00
IUUC-Oan-073580	Ornithorhynchus anatinus	33.63	1.10e-02	33.50
IUUC-Ocu-074226	Oryctolagus cuniculus	90.47	0.00e+00	1092.00
IUUC-Ola-087008	Oryzias latipes	64.02	0.00e+00	669.00
IUUC-Oga-088317	Otolemur garnettii	88.41	0.00e+00	975.00
IUUC-Oar-089720	Ovis aries	88.71	0.00e+00	984.00
IUUC-Ptr-091148	Pan troglodytes	92.57	0.00e+00	1061.00
IUUC-Pan-091764	Papio anubis	92.41	0.00e+00	1058.00
IUUC-Psi-094071	Pelodiscus sinensis	64.13	0.00e+00	764.00
IUUC-Pno-095045	Phaeosphaeria nodorum	24.28	7.00e-05	41.60
IUUC-Pfo-096500	Poecilia formosa	59.24	0.00e+00	717.00
IUUC-Pab-098014	Pongo abelii	90.63	0.00e+00	1051.00
IUUC-Pca-100121	Procavia capensis	88.19	0.00e+00	990.00
IUUC-Pva-102865	Pteropus vampyrus	91.10	0.00e+00	1011.00
IUUC-Pgr-103333	Puccinia graminis	23.06	6.00e-13	69.30
IUUC-Ptt-103702	Puccinia triticina	22.24	2.00e-15	77.80
IUUC-Sce-106429	Saccharomyces cerevisiae	24.47	7.00e-14	72.40
IUUC-Sha-106834	Sarcophilus harrisii	79.33	0.00e+00	943.00
IUUC-Sja-107818	Schizosaccharomyces japonicus	24.79	1.00e-19	91.30
IUUC-Spo-108301	Schizosaccharomyces pombe	27.37	1.00e-32	134.00
IUUC-Ssl-108512	Sclerotinia sclerotiorum	25.27	4.00e-22	99.80
IUUC-Sar-112963	Sorex araneus	43.88	2.00e-125	442.00
IUUC-Sre-114950	Sporisorium reilianum	23.74	5.00e-19	89.40
IUUC-Ssc-116010	Sus scrofa	89.68	0.00e+00	984.00
IUUC-Tgu-116603	Taeniopygia guttata	34.09	7.00e-03	34.30
IUUC-Tru-118148	Takifugu rubripes	57.81	0.00e+00	678.00
IUUC-Tsy-119506	Tarsius syrichta	38.54	2.00e-05	42.40
IUUC-Tni-120552	Tetraodon nigroviridis	33.33	7.00e-04	37.40
IUUC-Tre-121894	Trichoderma reesei	26.87	1.00e-27	118.00
IUUC-Tvi-122501	Trichoderma virens	28.35	1.00e-31	130.00
IUUC-Tme-127084	Tuber melanosporum	25.15	5.00e-26	112.00
IUUC-Tbe-127980	Tupaia belangeri	59.92	3.00e-83	301.00
IUUC-Ttr-128656	Tursiops truncatus	55.76	0.00e+00	660.00
IUUC-Uma-129530	Ustilago maydis	23.66	4.00e-24	106.00
IUUC-Vda-129709	Verticillium dahliae	27.03	6.00e-24	105.00
IUUC-Vpa-130739	Vicugna pacos	44.28	1.00e-98	353.00
IUUC-Xtr-132404	Xenopus tropicalis	60.00	0.00e+00	725.00
IUUC-Xma-133051	Xiphophorus maculatus	58.36	0.00e+00	697.00
IUUC-Yli-134681	Yarrowia lipolytica	24.65	3.00e-29	123.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence