iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007492

Ensembl Protein ID

AT5G20620.1

UniProt Accession

P0CH32; O80715; P59263; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; Q9M1P9; Q9S7X3; UBQ4_ARATH

Genbank Protein ID

CAA31331.1; AAB53929.1; AED92867.1

Protein Name

Polyubiquitin 4; Ubiquitin

Genbank Nucleotide ID

X12853; U33014; AF296832

Gene Name

UBQ4; At5g20620; T1M15.20

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G20620	AT5G20620.1	AT5G20620.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	1.40e-206	670.2	305	380
ULD/UDP/UBQ/UBQ_PIM	7.50e-141	459.3	305	377

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 305  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 305  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 377
           99********************************************************************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Belongs to the ubiquitin family.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATTTTCTAG CGAAGTATTA TCTTCTGCTC TGATTCTTCA TCTCTCTCAC AGAAAAAAGT 60
AAAAAAAAAC CTAGATCGCT CTTCACATCT CTTCGAACGA TTCTCTCTTT CAAGGTACCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G20620

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003614	Anas platyrhynchos	96.01	1.00e-152	531.00
IUUC-Aca-004901	Anolis carolinensis	95.80	0.00e+00	727.00
IUUC-Aly-005822	Arabidopsis lyrata	100.00	0.00e+00	756.00
IUUC-Ago-007937	Ashbya gossypii	96.86	0.00e+00	741.00
IUUC-Afl-008740	Aspergillus flavus	97.37	3.00e-171	593.00
IUUC-Ang-009646	Aspergillus niger	97.37	3.00e-170	590.00
IUUC-Aor-009964	Aspergillus oryzae	97.37	3.00e-171	593.00
IUUC-Ate-010298	Aspergillus terreus	97.37	3.00e-171	593.00
IUUC-Ame-011696	Astyanax mexicanus	93.44	0.00e+00	706.00
IUUC-Bdi-015013	Brachypodium distachyon	100.00	0.00e+00	751.00
IUUC-Bol-015820	Brassica oleracea	100.00	0.00e+00	751.00
IUUC-Cja-019812	Callithrix jacchus	96.05	0.00e+00	728.00
IUUC-Cgl-026543	Colletotrichum gloeosporioides	97.37	5.00e-127	446.00
IUUC-Dse-031434	Dothistroma septosporum	97.37	5.00e-127	446.00
IUUC-Fox-037730	Fusarium oxysporum	97.81	2.00e-127	447.00
IUUC-Gma-043605	Glycine max	99.74	0.00e+00	752.00
IUUC-Kpa-049199	Komagataella pastoris	97.37	3.00e-171	593.00
IUUC-Lpe-050731	Leersia perrieri	35.06	3.00e-43	168.00
IUUC-Lma-053015	Leptosphaeria maculans	96.13	1.00e-171	595.00
IUUC-Oan-073470	Ornithorhynchus anatinus	95.80	0.00e+00	727.00
IUUC-Oba-075152	Oryza barthii	34.97	1.00e-42	166.00
IUUC-Obr-076626	Oryza brachyantha	100.00	0.00e+00	752.00
IUUC-Ogl-077274	Oryza glaberrima	94.47	0.00e+00	697.00
IUUC-Olu-087888	Ostreococcus lucimarinus	99.74	0.00e+00	752.00
IUUC-Pte-104277	Pyrenophora teres	97.37	5.00e-127	446.00
IUUC-Pyt-104779	Pyrenophora triticirepentis	97.37	5.00e-127	446.00
IUUC-Sce-106142	Saccharomyces cerevisiae	97.11	0.00e+00	740.00
IUUC-Sha-106780	Sarcophilus harrisii	94.75	7.00e-165	572.00
IUUC-Spo-108219	Schizosaccharomyces pombe	97.12	0.00e+00	741.00
IUUC-Smo-109665	Selaginella moellendorffii	98.68	0.00e+00	742.00
IUUC-Sbi-114611	Sorghum bicolor	100.00	0.00e+00	751.00
IUUC-Tae-125736	Triticum aestivum	100.00	0.00e+00	751.00
IUUC-Vda-129663	Verticillium dahliae	97.37	5.00e-127	446.00
IUUC-Vvi-131604	Vitis vinifera	100.00	0.00e+00	755.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence