iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114134

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G370300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g035220	Sb01g035220.1	Sb01g035220.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.60e-40	134.2	392	425
UBD/Beta-Prp	5.50e-67	226.9	226	447

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           gH  +v +++f ++  l+++Gs D+ +++WDlr+
   Q: 392  GHVKPVLGVSFsPNgYLVATGSEDNFCRIWDLRK 425
           899*********77688899***********987 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           ++ ++t   fs+d s+lat+s++g ikvw++ + +++++l+gh++  t+v fsp ++ l+t+s Drt+k+w ++ g+ ++++ gh d++  l+f+p
   Q: 226  DDRPLTGCSFSRDASMLATSSWSGIIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADRTAKLWKPD-GSLLMSFDGHLDRLARLAFHP 320
           6789999****************************************************************996.789****************** PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
           sg++l ++s d+t r+wd++tg++l  +++gh+++v +v++hpdg+l +s++lD   r+Wdl++g+l   l+g h ++v  +sf++ng  +++gs+
   Q: 321  SGKYLGTASFDKTWRLWDINTGKELL-LQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSGRLFFALKG-HVKPVLGVSFSPNGYLVATGSE 414
           **************************.*********************************************9.********************** PP
   S: 201  dgtvklwdlqtgecvrtlnghtdnvksvrfspn 233
           d+  ++wdl++++++++  +h++ ++ v+f p+
   Q: 415  DNFCRIWDLRKKQMLYSIPAHKSLISHVKFEPQ 447
           *****************************9976 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MENPRPQPPA PTPPMAPLPV HPPIAPIPVP PPRAPAAAAS MASTSTSSAG GGGEAEYELS 60
DDHRAARERH ERAVQELLQR RRAYAMAVPT NDSAVRARLR RLGEPITLFG EREMERRDRL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGAACC CCAGGCCCCA GCCCCCGGCC CCCACTCCTC CCATGGCTCC GCTTCCCGTC 60
CACCCGCCAA TCGCTCCCAT CCCCGTCCCT CCGCCCCGCG CGCCCGCCGC CGCTGCTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

sbi:SORBI_01g035220

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	87.59	0.00e+00	738.00
IUUC-Aml-001737	Ailuropoda melanoleuca	43.75	1.00e-111	396.00
IUUC-Atr-002828	Amborella trichopoda	64.95	1.00e-173	601.00
IUUC-Apl-003723	Anas platyrhynchos	43.42	3.00e-111	394.00
IUUC-Aca-004972	Anolis carolinensis	43.01	5.00e-109	387.00
IUUC-Aly-006531	Arabidopsis lyrata	66.67	4.00e-163	567.00
IUUC-Ath-007367	Arabidopsis thaliana	64.47	5.00e-178	616.00
IUUC-Ago-007893	Ashbya gossypii	32.68	3.00e-54	204.00
IUUC-Acl-008236	Aspergillus clavatus	38.43	3.00e-78	285.00
IUUC-Afl-008522	Aspergillus flavus	39.18	4.00e-83	301.00
IUUC-Afu-008904	Aspergillus fumigatus	39.00	7.00e-85	306.00
IUUC-Ani-009198	Aspergillus nidulans	38.67	8.00e-85	306.00
IUUC-Ang-009662	Aspergillus niger	41.24	1.00e-86	312.00
IUUC-Aor-009881	Aspergillus oryzae	39.18	4.00e-83	301.00
IUUC-Ate-010333	Aspergillus terreus	37.91	6.00e-79	287.00
IUUC-Ame-011697	Astyanax mexicanus	41.23	2.00e-109	388.00
IUUC-Bgr-012254	Blumeria graminis	36.42	3.00e-83	301.00
IUUC-Bta-012615	Bos taurus	43.75	7.00e-112	396.00
IUUC-Bci-013720	Botrytis cinerea	37.08	2.00e-85	309.00
IUUC-Bdi-014302	Brachypodium distachyon	90.16	0.00e+00	784.00
IUUC-Bol-015594	Brassica oleracea	66.45	5.00e-171	593.00
IUUC-Bra-017465	Brassica rapa	66.45	1.00e-170	592.00
IUUC-Cel-018632	Caenorhabditis elegans	37.91	9.00e-77	280.00
IUUC-Cja-019747	Callithrix jacchus	43.75	5.00e-112	397.00
IUUC-Cfa-020288	Canis familiaris	43.75	9.00e-112	396.00
IUUC-Cpo-021440	Cavia porcellus	44.20	4.00e-111	394.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	50.57	2.00e-96	345.00
IUUC-Csa-023139	Chlorocebus sabaeus	46.04	7.00e-92	329.00
IUUC-Cho-024481	Choloepus hoffmanni	42.95	2.00e-109	388.00
IUUC-Cin-025106	Ciona intestinalis	38.98	6.00e-98	350.00
IUUC-Csv-026087	Ciona savignyi	40.04	4.00e-97	347.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	35.19	4.00e-83	301.00
IUUC-Cne-026793	Cryptococcus neoformans	38.36	6.00e-89	320.00
IUUC-Dre-028723	Danio rerio	43.57	2.00e-109	388.00
IUUC-Dno-029299	Dasypus novemcinctus	43.53	2.00e-111	395.00
IUUC-Dse-031562	Dothistroma septosporum	34.74	4.00e-81	294.00
IUUC-Dme-031783	Drosophila melanogaster	41.43	7.00e-86	310.00
IUUC-Ete-032669	Echinops telfairi	43.88	1.00e-112	399.00
IUUC-Eca-033566	Equus caballus	43.75	1.00e-111	395.00
IUUC-Eeu-034524	Erinaceus europaeus	49.15	2.00e-70	258.00
IUUC-Fca-036215	Felis catus	43.75	7.00e-112	396.00
IUUC-Fal-037018	Ficedula albicollis	42.39	1.00e-91	329.00
IUUC-Fox-037936	Fusarium oxysporum	33.95	9.00e-76	276.00
IUUC-Fso-038366	Fusarium solani	35.66	2.00e-82	298.00
IUUC-Gmo-038966	Gadus morhua	42.36	4.00e-82	297.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.12	2.00e-75	276.00
IUUC-Gga-040797	Gallus gallus	43.48	8.00e-112	396.00
IUUC-Gac-042598	Gasterosteus aculeatus	42.04	7.00e-99	353.00
IUUC-Gma-044220	Glycine max	68.51	2.00e-175	607.00
IUUC-Ggo-044682	Gorilla gorilla	43.75	1.00e-111	395.00
IUUC-Hsa-045804	Homo sapiens	43.75	7.00e-112	396.00
IUUC-Hvu-047567	Hordeum vulgare	86.90	0.00e+00	715.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	43.97	2.00e-112	398.00
IUUC-Kpa-049369	Komagataella pastoris	34.08	3.00e-56	211.00
IUUC-Lch-050074	Latimeria chalumnae	42.89	5.00e-101	360.00
IUUC-Lpe-051333	Leersia perrieri	89.20	0.00e+00	710.00
IUUC-Loc-052164	Lepisosteus oculatus	43.08	8.00e-111	393.00
IUUC-Lma-053088	Leptosphaeria maculans	37.37	5.00e-77	281.00
IUUC-Laf-053460	Loxodonta africana	43.75	6.00e-112	396.00
IUUC-Mcc-055859	Macaca mulatta	43.75	7.00e-112	396.00
IUUC-Meu-056134	Macropus eugenii	43.30	1.00e-111	395.00
IUUC-Mor-057251	Magnaporthe oryzae	37.45	9.00e-83	300.00
IUUC-Mpo-057375	Magnaporthe poae	41.60	1.00e-52	198.00
IUUC-Mtr-057656	Medicago truncatula	67.92	3.00e-156	543.00
IUUC-Mla-059145	Melampsora laricipopulina	41.16	2.00e-85	308.00
IUUC-Mga-059855	Meleagris gallopavo	43.42	1.00e-111	395.00
IUUC-Mvi-060372	Microbotryum violaceum	40.84	1.00e-77	283.00
IUUC-Mmr-060826	Microcebus murinus	43.97	3.00e-112	397.00
IUUC-Mdo-062748	Monodelphis domestica	43.53	1.00e-111	395.00
IUUC-Mmu-063351	Mus musculus	43.75	1.00e-111	396.00
IUUC-Mac-064846	Musa acuminata	74.37	3.00e-175	607.00
IUUC-Mpu-066006	Mustela putorius furo	43.75	7.00e-112	396.00
IUUC-Mlu-067722	Myotis lucifugus	43.97	4.00e-112	397.00
IUUC-Nfi-068399	Neosartorya fischeri	38.83	1.00e-86	312.00
IUUC-Ncr-068711	Neurospora crassa	38.02	1.00e-88	319.00
IUUC-Nle-069982	Nomascus leucogenys	43.75	5.00e-112	397.00
IUUC-Opr-070596	Ochotona princeps	43.53	1.00e-111	395.00
IUUC-Ont-072374	Oreochromis niloticus	43.49	4.00e-104	371.00
IUUC-Oan-073166	Ornithorhynchus anatinus	45.40	2.00e-96	344.00
IUUC-Ocu-074371	Oryctolagus cuniculus	43.53	2.00e-111	395.00
IUUC-Oba-075083	Oryza barthii	91.04	0.00e+00	777.00
IUUC-Obr-076405	Oryza brachyantha	89.43	0.00e+00	726.00
IUUC-Ogl-077683	Oryza glaberrima	91.28	0.00e+00	783.00
IUUC-Ogu-078486	Oryza glumaepatula	90.79	0.00e+00	773.00
IUUC-Oin-079679	Oryza indica	90.54	0.00e+00	792.00
IUUC-Olo-080243	Oryza longistaminata	91.15	0.00e+00	690.00
IUUC-Ome-081230	Oryza meridionalis	90.58	0.00e+00	795.00
IUUC-Oni-082961	Oryza nivara	90.54	0.00e+00	792.00
IUUC-Opu-083189	Oryza punctata	91.01	0.00e+00	801.00
IUUC-Oru-084353	Oryza rufipogon	90.57	0.00e+00	762.00
IUUC-Osa-085458	Oryza sativa	90.58	0.00e+00	795.00
IUUC-Ola-086940	Oryzias latipes	43.75	1.00e-108	386.00
IUUC-Olu-087580	Ostreococcus lucimarinus	42.28	4.00e-79	287.00
IUUC-Oga-088703	Otolemur garnettii	42.06	3.00e-106	378.00
IUUC-Oar-089829	Ovis aries	43.97	4.00e-112	397.00
IUUC-Ptr-090838	Pan troglodytes	43.75	7.00e-112	396.00
IUUC-Pan-092261	Papio anubis	43.65	2.00e-110	391.00
IUUC-Psi-093020	Pelodiscus sinensis	42.86	1.00e-110	392.00
IUUC-Pno-094858	Phaeosphaeria nodorum	38.27	3.00e-77	281.00
IUUC-Ppa-095531	Physcomitrella patens	62.39	1.00e-162	565.00
IUUC-Pfo-096812	Poecilia formosa	40.37	4.00e-86	310.00
IUUC-Pab-097805	Pongo abelii	45.66	3.00e-92	331.00
IUUC-Pop-100051	Populus trichocarpa	67.10	2.00e-169	588.00
IUUC-Pca-100152	Procavia capensis	43.75	1.00e-111	395.00
IUUC-Ppe-101244	Prunus persica	66.29	1.00e-161	561.00
IUUC-Pva-102529	Pteropus vampyrus	41.74	4.00e-103	367.00
IUUC-Pgr-103550	Puccinia graminis	36.56	5.00e-87	314.00
IUUC-Ptt-103951	Puccinia triticina	36.10	1.00e-59	223.00
IUUC-Pte-104151	Pyrenophora teres	33.90	1.00e-70	259.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	34.12	8.00e-71	260.00
IUUC-Rno-105747	Rattus norvegicus	43.97	5.00e-112	397.00
IUUC-Sce-106418	Saccharomyces cerevisiae	32.95	3.00e-63	235.00
IUUC-Sha-107334	Sarcophilus harrisii	43.30	1.00e-111	395.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	34.99	2.00e-63	235.00
IUUC-Spo-108189	Schizosaccharomyces pombe	41.27	3.00e-89	321.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	36.65	5.00e-85	307.00
IUUC-Smo-108924	Selaginella moellendorffii	59.00	4.00e-156	543.00
IUUC-Sit-110102	Setaria italica	95.33	0.00e+00	809.00
IUUC-Sly-111668	Solanum lycopersicum	67.71	9.00e-166	575.00
IUUC-Stu-111928	Solanum tuberosum	67.93	1.00e-166	578.00
IUUC-Sar-113266	Sorex araneus	43.70	6.00e-92	330.00
IUUC-Sre-115114	Sporisorium reilianum	40.83	6.00e-88	317.00
IUUC-Ssc-115443	Sus scrofa	43.75	7.00e-112	396.00
IUUC-Tgu-117157	Taeniopygia guttata	42.98	1.00e-111	395.00
IUUC-Tru-118587	Takifugu rubripes	43.95	2.00e-107	382.00
IUUC-Tsy-119157	Tarsius syrichta	46.22	7.00e-99	353.00
IUUC-Tni-120427	Tetraodon nigroviridis	43.58	4.00e-107	380.00
IUUC-Tca-121368	Theobroma cacao	68.37	0.00e+00	634.00
IUUC-Tre-122074	Trichoderma reesei	35.99	7.00e-81	293.00
IUUC-Tvi-122349	Trichoderma virens	35.17	4.00e-81	294.00
IUUC-Tae-125651	Triticum aestivum	87.92	0.00e+00	762.00
IUUC-Tur-126532	Triticum urartu	88.33	0.00e+00	662.00
IUUC-Tme-126951	Tuber melanosporum	38.04	2.00e-80	292.00
IUUC-Tbe-128136	Tupaia belangeri	39.96	3.00e-96	344.00
IUUC-Ttr-129169	Tursiops truncatus	38.16	3.00e-54	204.00
IUUC-Uma-129399	Ustilago maydis	38.91	5.00e-85	307.00
IUUC-Vda-129842	Verticillium dahliae	37.45	5.00e-87	313.00
IUUC-Vpa-130440	Vicugna pacos	43.75	4.00e-112	397.00
IUUC-Vvi-131075	Vitis vinifera	68.30	2.00e-170	591.00
IUUC-Xma-133002	Xiphophorus maculatus	45.40	6.00e-91	326.00
IUUC-Yli-134569	Yarrowia lipolytica	35.56	6.00e-72	263.00
IUUC-Zma-135799	Zea mays	91.35	0.00e+00	824.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence