iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007215

UUCD1 version

UUC-ArT-01420

Ensembl Protein ID

AT1G50440.3

UniProt Accession

Q9LPR9; Q9LPR9_ARATH

Genbank Protein ID

AAF87887.1; AAM61619.1; AAY57586.1; ABF83680.1; AEE32549.1; AEE32550.1; AEE32551.1

Protein Name

At1g50440; F11F12.20 protein; Putative uncharacterized protein; RING finger family protein; RING/FYVE/PHD zinc finger superfamily protein

Genbank Nucleotide ID

AC012561; AY085063; DQ059100; BT025790; CP002684; CP002684; CP002684

Gene Name

At1g50440; F11F12.20; F11F12_20

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G50440	AT1G50440.3	AT1G50440.3
AT1G50440	AT1G50440.4	AT1G50440.4
AT1G50440	AT1G50440.5	AT1G50440.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.62	11.5	64	112

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCg......HvfhadClqkwpglknssskefrCPlCr 46
           C iCl+   +  l+ pC+      H  h++Cl +w  + ++   + +C  Cr
   Q: 64   CRICLDVGGE-DLIAPCNckgtqkH-VHRSCLDNW-RSTKEGFAFSHCTECR 112
           9*****8877.56699864444435.6********.5554555555788887 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MQLVPSDDDD DRKEQILFDE STSSNEIVAA ERGDRVVEEG QVSEIAETDD DETTLLVSGD 60
QPQCRICLDV GGEDLIAPCN CKGTQKHVHR SCLDNWRSTK EGFAFSHCTE CRAFFKLRAN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATCTTCGTC ATCTCTGTAT TCAACACATA GTGATGAATC GAGACTAACA AAATCAAATT 60
CTCTTCACTC TGATTCGCAG TCATAGTTTA CCAATTTCTT CTAACTCGCA AGCAATGGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR033275--MARCH-like
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

ath:AT1G50440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000798	Aegilops tauschii	66.80	5.00e-78	283.00
IUUC-Atr-002775	Amborella trichopoda	75.60	3.00e-95	340.00
IUUC-Aly-006064	Arabidopsis lyrata	98.40	3.00e-139	486.00
IUUC-Acl-008264	Aspergillus clavatus	28.57	5.00e-05	41.20
IUUC-Ang-009870	Aspergillus niger	23.23	2.00e-06	45.80
IUUC-Bdi-014004	Brachypodium distachyon	78.17	6.00e-82	296.00
IUUC-Bol-015895	Brassica oleracea	89.64	3.00e-123	433.00
IUUC-Bra-018016	Brassica rapa	88.80	2.00e-121	427.00
IUUC-Cpo-021511	Cavia porcellus	30.14	2.00e-09	55.50
IUUC-Cre-022957	Chlamydomonas reinhardtii	27.53	5.00e-10	57.80
IUUC-Cgl-026475	Colletotrichum gloeosporioides	30.10	9.00e-06	43.50
IUUC-Cne-027028	Cryptococcus neoformans	32.95	1.00e-09	56.60
IUUC-Fca-035894	Felis catus	30.14	2.00e-09	55.80
IUUC-Fso-038329	Fusarium solani	37.78	3.00e-06	45.40
IUUC-Ggr-039944	Gaeumannomyces graminis	34.72	2.00e-06	46.20
IUUC-Gma-044393	Glycine max	78.72	4.00e-106	376.00
IUUC-Hvu-047111	Hordeum vulgare	67.58	2.00e-81	294.00
IUUC-Lpe-051137	Leersia perrieri	69.55	2.00e-95	341.00
IUUC-Lma-053268	Leptosphaeria maculans	39.13	4.00e-06	44.70
IUUC-Mor-056968	Magnaporthe oryzae	25.35	5.00e-06	44.70
IUUC-Mpo-057421	Magnaporthe poae	37.50	9.00e-06	43.90
IUUC-Mtr-057881	Medicago truncatula	84.26	2.00e-101	361.00
IUUC-Mvi-060405	Microbotryum violaceum	37.80	4.00e-10	58.50
IUUC-Mac-065259	Musa acuminata	74.57	5.00e-101	359.00
IUUC-Ncr-068689	Neurospora crassa	46.67	1.00e-06	47.00
IUUC-Oba-075340	Oryza barthii	53.31	5.00e-63	233.00
IUUC-Obr-076417	Oryza brachyantha	67.84	2.00e-96	344.00
IUUC-Ogl-077311	Oryza glaberrima	69.42	1.00e-95	341.00
IUUC-Ogu-078495	Oryza glumaepatula	64.46	3.00e-84	304.00
IUUC-Oin-080134	Oryza indica	69.42	2.00e-95	341.00
IUUC-Olo-080327	Oryza longistaminata	53.72	2.00e-63	234.00
IUUC-Ome-081608	Oryza meridionalis	54.95	4.00e-21	93.60
IUUC-Oni-082799	Oryza nivara	53.31	4.00e-63	233.00
IUUC-Opu-084134	Oryza punctata	53.50	1.00e-62	231.00
IUUC-Oru-084834	Oryza rufipogon	53.31	5.00e-63	233.00
IUUC-Osa-085741	Oryza sativa	69.42	1.00e-95	341.00
IUUC-Ola-087137	Oryzias latipes	41.67	2.00e-09	55.10
IUUC-Olu-087713	Ostreococcus lucimarinus	40.38	5.00e-06	44.30
IUUC-Pop-099375	Populus trichocarpa	71.71	3.00e-105	374.00
IUUC-Pca-100424	Procavia capensis	30.07	2.00e-09	55.10
IUUC-Ppe-101927	Prunus persica	70.68	8.00e-103	365.00
IUUC-Pgr-103682	Puccinia graminis	32.95	1.00e-07	50.40
IUUC-Pyt-104598	Pyrenophora triticirepentis	30.77	4.00e-06	44.70
IUUC-Ssl-108455	Sclerotinia sclerotiorum	43.24	3.00e-05	42.40
IUUC-Smo-109092	Selaginella moellendorffii	66.15	7.00e-61	226.00
IUUC-Sit-110458	Setaria italica	79.80	8.00e-94	335.00
IUUC-Sly-111179	Solanum lycopersicum	68.24	2.00e-65	241.00
IUUC-Stu-112143	Solanum tuberosum	66.81	8.00e-86	309.00
IUUC-Sbi-113840	Sorghum bicolor	64.98	1.00e-92	332.00
IUUC-Sre-115202	Sporisorium reilianum	32.35	2.00e-07	51.20
IUUC-Tca-121093	Theobroma cacao	71.65	2.00e-104	370.00
IUUC-Tvi-122666	Trichoderma virens	25.88	3.00e-07	48.50
IUUC-Tae-123135	Triticum aestivum	66.80	7.00e-80	289.00
IUUC-Tur-126784	Triticum urartu	67.06	3.00e-78	284.00
IUUC-Vvi-131321	Vitis vinifera	72.14	2.00e-107	380.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence