iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tru-118651

Ensembl Protein ID

ENSTRUP00000023298.1

UniProt Accession

H2TF55; H2TF55_TAKRU

Protein Name

Uncharacterized protein

Gene Name

rad23b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSTRUG00000009265.1	ENSTRUT00000023394.1	ENSTRUP00000023297.1
ENSTRUG00000009265.1	ENSTRUT00000023395.1	ENSTRUP00000023298.1
ENSTRUG00000009265.1	ENSTRUT00000023396.1	ENSTRUP00000023299.1
ENSTRUG00000009265.1	ENSTRUT00000023397.1	ENSTRUP00000023300.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.10e-19	71.2	176	214
ULD/UDP/UBQ/UBQ_PIM	1.20e-23	84.0	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLldg 41
           +e+++++++ MG+dre+++ aLra++nn+++AveyLl+g
   Q: 176  YESMVNEIMLMGYDREQVVVALRASFNNPDRAVEYLLTG 214
           79***********************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           m +t+ktl++++f++e++e++tv+ lKe+i++e+g   +p++ +kLIyaG iL+D ++L+e++i+d+++v+++ +k+k
   Q: 1    MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGkdnFPVSGLKLIYAGVILNDVKPLKEYNISDKNFVVVMATKPK 78
           789***********************************************************************9987 PP

Organism

Takifugu rubripes

Protein Sequence
(Fasta)

MLITLKTLQQ QTFKIEIDEE ETVKTLKERI EAEKGKDNFP VSGLKLIYAG VILNDVKPLK 60
EYNISDKNFV VVMATKPKTA PAATQPSPAA SGPCTAAPPA PGACSTVSEV PTQQTTKEDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAGTACCCG CAGCGGCCAC TGGGGGAGCC GCTGCGCTCA TTTCAACCAC AGAAGAAGAA 60
GAACGTGAAC ATCATGGCGG TTGACACTTT GTAATGAGCC AACAAAATAG CAAAATTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001195	Ailuropoda melanoleuca	60.71	2.00e-59	222.00
IUUC-Atr-002756	Amborella trichopoda	35.04	8.00e-51	194.00
IUUC-Apl-003371	Anas platyrhynchos	52.84	6.00e-75	274.00
IUUC-Aca-004599	Anolis carolinensis	56.49	3.00e-59	222.00
IUUC-Ago-007830	Ashbya gossypii	30.87	2.00e-16	79.70
IUUC-Afl-008605	Aspergillus flavus	34.62	3.00e-26	112.00
IUUC-Afu-008877	Aspergillus fumigatus	34.90	1.00e-24	107.00
IUUC-Ani-009460	Aspergillus nidulans	38.96	6.00e-31	128.00
IUUC-Aor-010032	Aspergillus oryzae	34.62	3.00e-26	112.00
IUUC-Bgr-012056	Blumeria graminis	31.79	7.00e-33	134.00
IUUC-Bta-012377	Bos taurus	49.75	1.00e-82	299.00
IUUC-Bdi-014355	Brachypodium distachyon	32.77	2.00e-44	172.00
IUUC-Bol-015272	Brassica oleracea	33.58	5.00e-48	184.00
IUUC-Bra-016952	Brassica rapa	37.87	5.00e-36	145.00
IUUC-Cja-018772	Callithrix jacchus	62.61	7.00e-62	231.00
IUUC-Cfa-020683	Canis familiaris	58.84	5.00e-62	231.00
IUUC-Cpo-022145	Cavia porcellus	61.83	2.00e-62	233.00
IUUC-Csa-023714	Chlorocebus sabaeus	54.22	1.00e-91	330.00
IUUC-Cho-024814	Choloepus hoffmanni	46.53	1.00e-67	250.00
IUUC-Csv-025823	Ciona savignyi	38.80	4.00e-38	151.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	28.84	8.00e-16	77.80
IUUC-Cme-027260	Cyanidioschyzon merolae	30.04	1.00e-22	100.00
IUUC-Dre-027581	Danio rerio	48.78	9.00e-74	270.00
IUUC-Dno-029543	Dasypus novemcinctus	62.18	5.00e-63	234.00
IUUC-Dme-032027	Drosophila melanogaster	37.24	1.00e-61	230.00
IUUC-Ete-032583	Echinops telfairi	60.70	2.00e-43	170.00
IUUC-Eca-034243	Equus caballus	63.45	3.00e-62	232.00
IUUC-Eeu-034721	Erinaceus europaeus	59.72	1.00e-44	173.00
IUUC-Fca-035679	Felis catus	63.87	3.00e-62	232.00
IUUC-Fal-037148	Ficedula albicollis	58.50	5.00e-61	228.00
IUUC-Fox-037960	Fusarium oxysporum	35.00	2.00e-17	83.60
IUUC-Fso-038107	Fusarium solani	37.79	1.00e-21	97.40
IUUC-Gmo-038751	Gadus morhua	58.77	7.00e-64	236.00
IUUC-Gga-040544	Gallus gallus	53.06	3.00e-81	295.00
IUUC-Gac-042239	Gasterosteus aculeatus	66.83	1.00e-113	402.00
IUUC-Gma-044245	Glycine max	35.68	8.00e-50	191.00
IUUC-Ggo-045125	Gorilla gorilla	61.20	8.00e-63	234.00
IUUC-Hsa-046519	Homo sapiens	61.20	8.00e-63	234.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	62.61	1.00e-60	227.00
IUUC-Lch-050553	Latimeria chalumnae	59.55	4.00e-54	205.00
IUUC-Laf-054293	Loxodonta africana	62.61	9.00e-62	230.00
IUUC-Mcc-055600	Macaca mulatta	59.21	1.00e-63	236.00
IUUC-Meu-056082	Macropus eugenii	57.71	4.00e-53	201.00
IUUC-Mor-057287	Magnaporthe oryzae	31.94	2.00e-16	80.10
IUUC-Mtr-058239	Medicago truncatula	32.37	1.00e-47	183.00
IUUC-Mmr-061159	Microcebus murinus	63.90	2.00e-62	232.00
IUUC-Mdo-061967	Monodelphis domestica	61.57	7.00e-59	221.00
IUUC-Mmu-063258	Mus musculus	58.66	7.00e-64	237.00
IUUC-Mac-064468	Musa acuminata	32.46	2.00e-47	182.00
IUUC-Mpu-066389	Mustela putorius furo	60.80	1.00e-60	226.00
IUUC-Mlu-067999	Myotis lucifugus	63.45	1.00e-60	226.00
IUUC-Nfi-068390	Neosartorya fischeri	34.51	1.00e-24	107.00
IUUC-Nle-069655	Nomascus leucogenys	59.21	2.00e-64	239.00
IUUC-Ont-072484	Oreochromis niloticus	59.16	1.00e-116	412.00
IUUC-Oan-073572	Ornithorhynchus anatinus	52.01	3.00e-84	305.00
IUUC-Ocu-074831	Oryctolagus cuniculus	64.71	2.00e-62	233.00
IUUC-Obr-076909	Oryza brachyantha	30.92	1.00e-44	174.00
IUUC-Ogl-077067	Oryza glaberrima	33.41	7.00e-48	184.00
IUUC-Ola-086540	Oryzias latipes	70.85	8.00e-73	267.00
IUUC-Oga-088023	Otolemur garnettii	64.05	1.00e-62	233.00
IUUC-Ptr-091165	Pan troglodytes	61.20	1.00e-62	233.00
IUUC-Psi-093477	Pelodiscus sinensis	55.16	1.00e-52	200.00
IUUC-Ppa-095654	Physcomitrella patens	38.80	5.00e-36	145.00
IUUC-Pfo-097385	Poecilia formosa	70.17	7.00e-79	287.00
IUUC-Pab-097868	Pongo abelii	61.20	4.00e-62	231.00
IUUC-Pop-099642	Populus trichocarpa	34.36	6.00e-48	184.00
IUUC-Pca-100652	Procavia capensis	57.84	1.00e-39	157.00
IUUC-Ppe-101522	Prunus persica	34.30	2.00e-48	186.00
IUUC-Pva-102412	Pteropus vampyrus	50.25	3.00e-84	305.00
IUUC-Rno-104844	Rattus norvegicus	58.87	5.00e-64	238.00
IUUC-Sha-107073	Sarcophilus harrisii	61.98	3.00e-59	221.00
IUUC-Smo-109129	Selaginella moellendorffii	30.30	1.00e-36	146.00
IUUC-Sit-109813	Setaria italica	33.01	5.00e-45	174.00
IUUC-Sly-111480	Solanum lycopersicum	34.45	6.00e-51	194.00
IUUC-Stu-112054	Solanum tuberosum	34.75	1.00e-50	193.00
IUUC-Sbi-114459	Sorghum bicolor	31.07	6.00e-43	167.00
IUUC-Ssc-116329	Sus scrofa	63.03	2.00e-62	233.00
IUUC-Tgu-116918	Taeniopygia guttata	54.92	1.00e-92	333.00
IUUC-Tca-121594	Theobroma cacao	33.25	6.00e-46	177.00
IUUC-Tvi-122617	Trichoderma virens	37.75	2.00e-25	109.00
IUUC-Tae-125230	Triticum aestivum	30.00	7.00e-34	137.00
IUUC-Tme-127092	Tuber melanosporum	33.18	2.00e-21	96.70
IUUC-Ttr-128464	Tursiops truncatus	63.45	3.00e-62	232.00
IUUC-Vpa-130357	Vicugna pacos	53.68	4.00e-39	155.00
IUUC-Xtr-132679	Xenopus tropicalis	62.50	3.00e-52	199.00
IUUC-Xma-133503	Xiphophorus maculatus	62.41	7.00e-109	387.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence