iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gga-040797

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AADN04000034

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000008857.6	ENSGALT00000014388.5	ENSGALP00000014372.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-37	125.7	420	458
UBD/Beta-Prp	2.90e-89	299.5	245	475

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++l+f ++  ++++Gs+D+t+kvWDlr+ +++ 
   Q: 420  GHLKEIYGLNFsPNgYHVATGSGDNTCKVWDLRQRKCIY 458
           7999********77799****************999975 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +++  +fsp+++llat++++g  k+w+v + +l+++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 245  DDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATvsldkkdvNLASCAADGSVKLWSLESDEPVAD 333
           677888899*********************************************998888899999*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  d   r+wdle ++++   ++gh++ v  +++h dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 334  IEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEIL-HQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 420
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspn 233
           h + +y l+f++ng ++++gs d+t k+wdl++ +c++t  +h++ v+ v+f pn
   Q: 421  HLKEIYGLNFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPN 475
           ****************************************************987 PP

Organism

Gallus gallus

Protein Sequence
(Fasta)

MASVRAPVAR GGARPAPVRA PAPPEPTKSK PSEEGDAPPA KRAPIFYGSL EEKERERLAK 60
GESGLLGKEG MKAALEAGNI NISSGEVFEL EDHMSERQAE VLAEFERRKR ARQINVSTDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGCAACGCA GCTATGGCTT CCGTGCGGGC ACCGGTGGCG CGCGGCGGGG CTCGGCCAGC 60
TCCTGTGAGG GCTCCCGCGC CGCCTGAGGT AGGAGCCGCG GTGTTTGGGT GTTTTCGTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0015030--C:Cajal body
GO:0016607--C:nuclear speck
GO:0071001--C:U4/U6 snRNP
GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

gga:417270

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	44.52	1.00e-101	362.00
IUUC-Aml-001737	Ailuropoda melanoleuca	91.42	0.00e+00	940.00
IUUC-Atr-002828	Amborella trichopoda	44.32	1.00e-107	383.00
IUUC-Apl-003723	Anas platyrhynchos	98.83	0.00e+00	1019.00
IUUC-Aca-004972	Anolis carolinensis	91.41	0.00e+00	922.00
IUUC-Aly-006531	Arabidopsis lyrata	42.70	9.00e-96	343.00
IUUC-Ath-007367	Arabidopsis thaliana	44.57	5.00e-111	394.00
IUUC-Ago-007893	Ashbya gossypii	34.51	5.00e-61	228.00
IUUC-Acl-008236	Aspergillus clavatus	39.24	1.00e-91	330.00
IUUC-Afl-008522	Aspergillus flavus	40.62	8.00e-100	357.00
IUUC-Afu-008904	Aspergillus fumigatus	39.52	5.00e-96	344.00
IUUC-Ani-009198	Aspergillus nidulans	40.62	3.00e-99	355.00
IUUC-Ang-009662	Aspergillus niger	42.29	5.00e-99	354.00
IUUC-Aor-009881	Aspergillus oryzae	40.62	7.00e-100	357.00
IUUC-Ate-010333	Aspergillus terreus	39.13	5.00e-89	321.00
IUUC-Ame-011697	Astyanax mexicanus	80.24	0.00e+00	820.00
IUUC-Bgr-012254	Blumeria graminis	39.19	3.00e-102	365.00
IUUC-Bta-012615	Bos taurus	90.22	0.00e+00	910.00
IUUC-Bci-013720	Botrytis cinerea	39.70	4.00e-101	361.00
IUUC-Bdi-014302	Brachypodium distachyon	45.33	4.00e-109	388.00
IUUC-Bol-015594	Brassica oleracea	44.20	2.00e-100	359.00
IUUC-Bra-017465	Brassica rapa	43.98	8.00e-101	360.00
IUUC-Cel-018632	Caenorhabditis elegans	44.73	2.00e-111	395.00
IUUC-Cja-019747	Callithrix jacchus	90.22	0.00e+00	947.00
IUUC-Cfa-020288	Canis familiaris	91.42	0.00e+00	942.00
IUUC-Cpo-021440	Cavia porcellus	89.84	0.00e+00	927.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	45.94	6.00e-85	307.00
IUUC-Csa-023139	Chlorocebus sabaeus	93.09	0.00e+00	667.00
IUUC-Cho-024481	Choloepus hoffmanni	90.49	0.00e+00	828.00
IUUC-Cin-025106	Ciona intestinalis	58.50	2.00e-176	611.00
IUUC-Csv-026087	Ciona savignyi	59.31	9.00e-177	612.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	38.38	4.00e-94	338.00
IUUC-Cne-026793	Cryptococcus neoformans	41.72	3.00e-106	378.00
IUUC-Dre-028723	Danio rerio	79.84	0.00e+00	805.00
IUUC-Dno-029299	Dasypus novemcinctus	91.22	0.00e+00	939.00
IUUC-Dor-030345	Dipodomys ordii	63.71	1.00e-80	293.00
IUUC-Dse-031562	Dothistroma septosporum	37.71	2.00e-92	332.00
IUUC-Dme-031783	Drosophila melanogaster	57.36	3.00e-141	495.00
IUUC-Ete-032669	Echinops telfairi	89.45	0.00e+00	938.00
IUUC-Eca-033566	Equus caballus	91.42	0.00e+00	939.00
IUUC-Eeu-034524	Erinaceus europaeus	92.89	2.00e-140	492.00
IUUC-Fca-036215	Felis catus	91.42	0.00e+00	941.00
IUUC-Fal-037018	Ficedula albicollis	97.90	0.00e+00	846.00
IUUC-Fox-037936	Fusarium oxysporum	38.48	1.00e-88	320.00
IUUC-Fso-038366	Fusarium solani	39.15	7.00e-93	334.00
IUUC-Gmo-038966	Gadus morhua	67.23	2.00e-141	494.00
IUUC-Ggr-039942	Gaeumannomyces graminis	37.53	5.00e-86	311.00
IUUC-Gac-042598	Gasterosteus aculeatus	69.23	0.00e+00	678.00
IUUC-Gma-044220	Glycine max	44.14	1.00e-102	366.00
IUUC-Ggo-044682	Gorilla gorilla	91.04	0.00e+00	932.00
IUUC-Hsa-045804	Homo sapiens	90.02	0.00e+00	944.00
IUUC-Hvu-047567	Hordeum vulgare	44.55	4.00e-98	351.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	89.80	0.00e+00	942.00
IUUC-Kpa-049369	Komagataella pastoris	32.88	5.00e-60	224.00
IUUC-Lch-050074	Latimeria chalumnae	79.88	0.00e+00	822.00
IUUC-Lpe-051333	Leersia perrieri	43.93	3.00e-99	355.00
IUUC-Loc-052164	Lepisosteus oculatus	81.03	0.00e+00	840.00
IUUC-Lma-053088	Leptosphaeria maculans	37.47	2.00e-86	312.00
IUUC-Laf-053460	Loxodonta africana	90.37	0.00e+00	943.00
IUUC-Mcc-055859	Macaca mulatta	91.42	0.00e+00	941.00
IUUC-Meu-056134	Macropus eugenii	89.63	0.00e+00	941.00
IUUC-Mor-057251	Magnaporthe oryzae	37.66	1.00e-87	317.00
IUUC-Mpo-057375	Magnaporthe poae	40.40	1.00e-53	202.00
IUUC-Mtr-057656	Medicago truncatula	43.74	1.00e-94	340.00
IUUC-Mla-059145	Melampsora laricipopulina	40.66	2.00e-102	365.00
IUUC-Mga-059855	Meleagris gallopavo	99.41	0.00e+00	1018.00
IUUC-Mvi-060372	Microbotryum violaceum	43.15	1.00e-95	343.00
IUUC-Mmr-060826	Microcebus murinus	91.42	0.00e+00	938.00
IUUC-Mdo-062748	Monodelphis domestica	90.10	0.00e+00	937.00
IUUC-Mmu-063351	Mus musculus	91.02	0.00e+00	937.00
IUUC-Mac-064846	Musa acuminata	45.85	1.00e-98	353.00
IUUC-Mpu-066006	Mustela putorius furo	91.42	0.00e+00	941.00
IUUC-Mlu-067398	Myotis lucifugus	91.42	0.00e+00	939.00
IUUC-Nfi-068399	Neosartorya fischeri	39.52	2.00e-101	362.00
IUUC-Ncr-068711	Neurospora crassa	37.92	2.00e-94	339.00
IUUC-Nle-069982	Nomascus leucogenys	90.22	0.00e+00	947.00
IUUC-Opr-070596	Ochotona princeps	90.22	0.00e+00	948.00
IUUC-Ont-072374	Oreochromis niloticus	76.73	0.00e+00	776.00
IUUC-Oan-073166	Ornithorhynchus anatinus	90.79	0.00e+00	736.00
IUUC-Ocu-074371	Oryctolagus cuniculus	91.62	0.00e+00	942.00
IUUC-Oba-075083	Oryza barthii	43.31	5.00e-102	364.00
IUUC-Obr-076405	Oryza brachyantha	44.19	2.00e-98	352.00
IUUC-Ogl-077683	Oryza glaberrima	43.31	7.00e-102	364.00
IUUC-Ogu-078486	Oryza glumaepatula	43.54	1.00e-101	363.00
IUUC-Oin-079679	Oryza indica	43.51	1.00e-104	374.00
IUUC-Olo-080243	Oryza longistaminata	42.75	8.00e-90	323.00
IUUC-Ome-081230	Oryza meridionalis	43.31	1.00e-104	372.00
IUUC-Oni-082961	Oryza nivara	43.31	1.00e-104	373.00
IUUC-Opu-083189	Oryza punctata	43.17	6.00e-102	364.00
IUUC-Oru-084353	Oryza rufipogon	43.59	2.00e-102	365.00
IUUC-Osa-085458	Oryza sativa	43.31	1.00e-104	372.00
IUUC-Ola-086940	Oryzias latipes	75.64	0.00e+00	781.00
IUUC-Olu-087580	Ostreococcus lucimarinus	36.67	4.00e-66	245.00
IUUC-Oga-088703	Otolemur garnettii	85.91	0.00e+00	894.00
IUUC-Oar-089829	Ovis aries	90.22	0.00e+00	910.00
IUUC-Ptr-090838	Pan troglodytes	90.02	0.00e+00	944.00
IUUC-Pan-092261	Papio anubis	89.84	0.00e+00	941.00
IUUC-Psi-093020	Pelodiscus sinensis	92.17	0.00e+00	967.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.42	7.00e-81	294.00
IUUC-Ppa-095531	Physcomitrella patens	45.91	2.00e-117	416.00
IUUC-Pfo-096812	Poecilia formosa	69.86	0.00e+00	691.00
IUUC-Pab-097805	Pongo abelii	80.23	0.00e+00	813.00
IUUC-Pop-100051	Populus trichocarpa	45.55	7.00e-105	374.00
IUUC-Pca-100152	Procavia capensis	89.98	0.00e+00	942.00
IUUC-Ppe-101244	Prunus persica	46.92	4.00e-108	384.00
IUUC-Pva-102529	Pteropus vampyrus	86.89	0.00e+00	899.00
IUUC-Pgr-103550	Puccinia graminis	36.49	1.00e-102	367.00
IUUC-Ptt-103951	Puccinia triticina	34.53	3.00e-83	302.00
IUUC-Pte-104151	Pyrenophora teres	38.66	9.00e-82	297.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	38.44	4.00e-82	298.00
IUUC-Rno-105747	Rattus norvegicus	90.82	0.00e+00	935.00
IUUC-Sce-106418	Saccharomyces cerevisiae	33.99	6.00e-70	257.00
IUUC-Sha-107334	Sarcophilus harrisii	90.50	0.00e+00	939.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	35.98	3.00e-72	265.00
IUUC-Spo-108189	Schizosaccharomyces pombe	37.67	8.00e-84	303.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	38.84	3.00e-99	355.00
IUUC-Smo-109578	Selaginella moellendorffii	46.46	1.00e-112	399.00
IUUC-Sit-110102	Setaria italica	44.47	4.00e-104	371.00
IUUC-Sly-111668	Solanum lycopersicum	45.96	2.00e-107	382.00
IUUC-Stu-111928	Solanum tuberosum	45.74	3.00e-107	382.00
IUUC-Sar-113266	Sorex araneus	79.44	0.00e+00	770.00
IUUC-Sbi-114134	Sorghum bicolor	44.02	7.00e-104	370.00
IUUC-Sre-115114	Sporisorium reilianum	42.05	1.00e-106	379.00
IUUC-Ssc-115443	Sus scrofa	91.42	0.00e+00	940.00
IUUC-Tgu-117157	Taeniopygia guttata	97.37	0.00e+00	945.00
IUUC-Tru-118587	Takifugu rubripes	74.66	0.00e+00	753.00
IUUC-Tsy-119157	Tarsius syrichta	92.31	0.00e+00	743.00
IUUC-Tni-120427	Tetraodon nigroviridis	76.04	0.00e+00	769.00
IUUC-Tca-121368	Theobroma cacao	45.22	4.00e-109	388.00
IUUC-Tre-122074	Trichoderma reesei	38.56	3.00e-91	328.00
IUUC-Tvi-122349	Trichoderma virens	37.29	5.00e-89	321.00
IUUC-Tae-125651	Triticum aestivum	44.22	9.00e-104	370.00
IUUC-Tur-126532	Triticum urartu	43.60	2.00e-89	322.00
IUUC-Tme-126951	Tuber melanosporum	41.68	1.00e-104	373.00
IUUC-Tbe-128136	Tupaia belangeri	82.19	0.00e+00	837.00
IUUC-Ttr-129169	Tursiops truncatus	92.62	1.00e-157	549.00
IUUC-Uma-129399	Ustilago maydis	42.83	3.00e-103	369.00
IUUC-Vda-129842	Verticillium dahliae	38.84	8.00e-96	343.00
IUUC-Vpa-130440	Vicugna pacos	90.41	0.00e+00	946.00
IUUC-Vvi-131075	Vitis vinifera	47.40	5.00e-109	388.00
IUUC-Xtr-132713	Xenopus tropicalis	48.43	7.00e-108	384.00
IUUC-Xma-133002	Xiphophorus maculatus	80.78	9.00e-174	602.00
IUUC-Yli-134569	Yarrowia lipolytica	36.84	1.00e-78	286.00
IUUC-Zma-135799	Zea mays	42.74	1.00e-102	367.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence