iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cin-025801

Ensembl Protein ID

ENSCINP00000010427.3

UniProt Accession

F7A5A0; F7A5A0_CIOIN

Genbank Protein ID

ENSCINP00000010427

Protein Name

Eukaryotic translation initiation factor 3 subunit F; Eukaryotic translation initiation factor 3 subunit 5

Genbank Nucleotide ID

EAAA01001987

Gene Name

LOC100183816

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCING00000005058.3	ENSCINT00000010427.3	ENSCINP00000010427.3

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	56.51	8.00e-87	318.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Ciona intestinalis

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

LISSEFHIKS MMNLVTPHAT LKGRRTKMAE GRKVKVHPVV LFSIIDSFER RKEDAKRVIG 60
TLLGTVDANA VTITNTFCVP HTESDDEVAF DMEFARNMYD LHRKVNPTEV IVGWYATGKD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCAGATACT TTTATTTCAT GGTTGATTAG TTCTGAGTTT CACATAAAAT CGATGATGAA 60
TTTAGTAACT CCACATGCGA CGTTAAAAGG CAGACGTACG AAAATGGCAG AGGGAAGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
GO:0006413--P:translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	36.46	2.00e-45	175.00
IUUC-Aml-001527	Ailuropoda melanoleuca	56.34	5.00e-88	316.00
IUUC-Atr-002686	Amborella trichopoda	43.94	6.00e-52	196.00
IUUC-Apl-003977	Anas platyrhynchos	53.81	3.00e-71	259.00
IUUC-Aca-004335	Anolis carolinensis	56.13	2.00e-90	323.00
IUUC-Aly-005945	Arabidopsis lyrata	37.50	2.00e-45	174.00
IUUC-Ath-007045	Arabidopsis thaliana	37.50	4.00e-44	170.00
IUUC-Acl-008365	Aspergillus clavatus	37.68	5.00e-48	183.00
IUUC-Afl-008742	Aspergillus flavus	36.86	6.00e-48	182.00
IUUC-Afu-009030	Aspergillus fumigatus	36.86	2.00e-49	188.00
IUUC-Ani-009212	Aspergillus nidulans	37.96	2.00e-50	191.00
IUUC-Ang-009712	Aspergillus niger	37.23	2.00e-48	184.00
IUUC-Aor-009885	Aspergillus oryzae	36.86	1.00e-49	188.00
IUUC-Ate-010315	Aspergillus terreus	37.36	1.00e-47	182.00
IUUC-Ame-010801	Astyanax mexicanus	40.37	7.00e-46	176.00
IUUC-Bgr-011982	Blumeria graminis	32.03	5.00e-41	160.00
IUUC-Bta-012804	Bos taurus	56.13	6.00e-88	316.00
IUUC-Bci-013891	Botrytis cinerea	31.32	1.00e-35	142.00
IUUC-Bdi-014328	Brachypodium distachyon	38.26	6.00e-46	176.00
IUUC-Bol-015446	Brassica oleracea	36.33	4.00e-46	176.00
IUUC-Bra-016862	Brassica rapa	36.33	3.00e-46	177.00
IUUC-Cel-018171	Caenorhabditis elegans	30.03	2.00e-36	144.00
IUUC-Cja-019335	Callithrix jacchus	56.51	9.00e-89	318.00
IUUC-Cfa-020138	Canis familiaris	55.97	1.00e-87	315.00
IUUC-Cpo-022109	Cavia porcellus	50.55	2.00e-74	271.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	37.50	1.00e-52	198.00
IUUC-Csa-023994	Chlorocebus sabaeus	56.51	1.00e-88	318.00
IUUC-Cho-024351	Choloepus hoffmanni	43.87	8.00e-60	222.00
IUUC-Csv-025805	Ciona savignyi	90.54	9.00e-162	560.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	29.71	2.00e-36	144.00
IUUC-Cne-026868	Cryptococcus neoformans	34.07	2.00e-34	137.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.43	1.00e-23	102.00
IUUC-Dre-028085	Danio rerio	55.60	6.00e-86	308.00
IUUC-Dno-030099	Dasypus novemcinctus	56.34	5.00e-88	316.00
IUUC-Dor-030324	Dipodomys ordii	50.75	8.00e-76	275.00
IUUC-Dse-031314	Dothistroma septosporum	36.56	3.00e-47	181.00
IUUC-Dme-031926	Drosophila melanogaster	44.78	3.00e-70	256.00
IUUC-Ete-032569	Echinops telfairi	55.39	3.00e-84	303.00
IUUC-Eca-033502	Equus caballus	54.28	5.00e-81	293.00
IUUC-Eeu-034883	Erinaceus europaeus	43.24	6.00e-37	145.00
IUUC-Fca-035873	Felis catus	56.34	4.00e-88	316.00
IUUC-Fal-036921	Ficedula albicollis	56.51	2.00e-90	323.00
IUUC-Fox-037765	Fusarium oxysporum	29.04	1.00e-32	132.00
IUUC-Fso-038240	Fusarium solani	30.03	1.00e-33	135.00
IUUC-Gmo-038864	Gadus morhua	54.85	3.00e-87	313.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.50	3.00e-31	127.00
IUUC-Gga-040952	Gallus gallus	56.51	3.00e-90	323.00
IUUC-Gac-041677	Gasterosteus aculeatus	54.51	5.00e-86	309.00
IUUC-Gma-043061	Glycine max	39.02	3.00e-44	170.00
IUUC-Ggo-045591	Gorilla gorilla	56.51	7.00e-89	319.00
IUUC-Hsa-046860	Homo sapiens	56.51	9.00e-89	318.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	55.97	1.00e-87	315.00
IUUC-Lch-049410	Latimeria chalumnae	53.14	2.00e-56	210.00
IUUC-Lpe-051102	Leersia perrieri	38.52	2.00e-44	171.00
IUUC-Loc-052016	Lepisosteus oculatus	49.45	1.00e-71	261.00
IUUC-Lma-053157	Leptosphaeria maculans	35.61	3.00e-47	181.00
IUUC-Laf-054568	Loxodonta africana	56.51	1.00e-88	318.00
IUUC-Mcc-054613	Macaca mulatta	56.51	8.00e-89	318.00
IUUC-Meu-056832	Macropus eugenii	37.32	1.00e-36	144.00
IUUC-Mor-057104	Magnaporthe oryzae	32.73	6.00e-37	146.00
IUUC-Mtr-058445	Medicago truncatula	37.88	1.00e-52	198.00
IUUC-Mla-059038	Melampsora laricipopulina	30.31	1.00e-31	128.00
IUUC-Mga-059548	Meleagris gallopavo	53.81	3.00e-75	273.00
IUUC-Mvi-060520	Microbotryum violaceum	27.57	1.00e-23	102.00
IUUC-Mdo-062376	Monodelphis domestica	54.85	4.00e-87	313.00
IUUC-Mmu-063254	Mus musculus	56.34	5.00e-88	316.00
IUUC-Mac-065635	Musa acuminata	39.49	4.00e-47	179.00
IUUC-Mpu-066314	Mustela putorius furo	56.34	4.00e-88	316.00
IUUC-Mlu-067512	Myotis lucifugus	55.97	3.00e-88	317.00
IUUC-Nfi-068262	Neosartorya fischeri	36.86	2.00e-49	187.00
IUUC-Ncr-068872	Neurospora crassa	33.33	6.00e-37	146.00
IUUC-Nle-070118	Nomascus leucogenys	56.34	4.00e-88	316.00
IUUC-Opr-071228	Ochotona princeps	54.47	7.00e-74	268.00
IUUC-Ont-072600	Oreochromis niloticus	55.35	1.00e-86	311.00
IUUC-Oan-073584	Ornithorhynchus anatinus	53.39	3.00e-74	270.00
IUUC-Ocu-074542	Oryctolagus cuniculus	56.34	2.00e-88	317.00
IUUC-Oba-075923	Oryza barthii	38.64	2.00e-46	177.00
IUUC-Obr-076313	Oryza brachyantha	38.52	9.00e-45	172.00
IUUC-Ogl-076932	Oryza glaberrima	38.64	2.00e-46	177.00
IUUC-Ogu-078152	Oryza glumaepatula	38.64	2.00e-46	177.00
IUUC-Oin-079528	Oryza indica	38.64	2.00e-46	177.00
IUUC-Olo-080401	Oryza longistaminata	38.64	2.00e-46	177.00
IUUC-Ome-081553	Oryza meridionalis	39.02	1.00e-46	178.00
IUUC-Oni-082090	Oryza nivara	38.64	2.00e-46	177.00
IUUC-Opu-083583	Oryza punctata	38.52	6.00e-45	172.00
IUUC-Oru-084492	Oryza rufipogon	38.64	2.00e-46	177.00
IUUC-Osa-085383	Oryza sativa	38.64	2.00e-46	177.00
IUUC-Ola-086835	Oryzias latipes	53.57	2.00e-85	306.00
IUUC-Olu-087716	Ostreococcus lucimarinus	27.64	2.00e-30	124.00
IUUC-Oga-088886	Otolemur garnettii	56.72	1.00e-88	318.00
IUUC-Oar-090079	Ovis aries	56.13	4.00e-88	316.00
IUUC-Ptr-091457	Pan troglodytes	56.51	1.00e-88	318.00
IUUC-Pan-092317	Papio anubis	51.35	6.00e-51	192.00
IUUC-Psi-093129	Pelodiscus sinensis	50.55	1.00e-77	281.00
IUUC-Pma-094488	Petromyzon marinus	57.46	5.00e-91	325.00
IUUC-Pno-095049	Phaeosphaeria nodorum	35.61	4.00e-48	183.00
IUUC-Ppa-095341	Physcomitrella patens	40.30	4.00e-57	213.00
IUUC-Pfo-096286	Poecilia formosa	54.85	7.00e-87	311.00
IUUC-Pab-097765	Pongo abelii	56.51	1.00e-88	318.00
IUUC-Pop-099131	Populus trichocarpa	39.02	8.00e-50	189.00
IUUC-Pca-100524	Procavia capensis	43.16	5.00e-49	186.00
IUUC-Ppe-101934	Prunus persica	41.67	8.00e-56	208.00
IUUC-Pva-102577	Pteropus vampyrus	55.97	5.00e-88	316.00
IUUC-Pgr-103521	Puccinia graminis	28.80	2.00e-29	121.00
IUUC-Pte-104304	Pyrenophora teres	35.97	1.00e-47	182.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	36.33	3.00e-48	184.00
IUUC-Rno-105717	Rattus norvegicus	56.34	6.00e-88	316.00
IUUC-Sha-107190	Sarcophilus harrisii	55.17	7.00e-85	305.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.77	1.00e-42	165.00
IUUC-Spo-108355	Schizosaccharomyces pombe	34.22	4.00e-48	183.00
IUUC-Smo-109374	Selaginella moellendorffii	39.39	2.00e-56	211.00
IUUC-Sit-110119	Setaria italica	37.88	8.00e-46	175.00
IUUC-Sly-111570	Solanum lycopersicum	40.34	4.00e-47	180.00
IUUC-Stu-112308	Solanum tuberosum	40.00	1.00e-50	191.00
IUUC-Sar-113515	Sorex araneus	58.02	4.00e-24	102.00
IUUC-Sbi-114605	Sorghum bicolor	37.88	2.00e-45	175.00
IUUC-Sre-114906	Sporisorium reilianum	39.34	3.00e-51	193.00
IUUC-Tgu-117087	Taeniopygia guttata	53.39	8.00e-74	268.00
IUUC-Tru-117700	Takifugu rubripes	53.14	7.00e-85	305.00
IUUC-Tni-120470	Tetraodon nigroviridis	53.73	8.00e-86	308.00
IUUC-Tca-121109	Theobroma cacao	40.53	8.00e-45	172.00
IUUC-Tre-122095	Trichoderma reesei	29.68	1.00e-33	135.00
IUUC-Tvi-122580	Trichoderma virens	29.68	1.00e-33	135.00
IUUC-Tae-125129	Triticum aestivum	39.02	2.00e-48	184.00
IUUC-Tur-126658	Triticum urartu	32.84	1.00e-39	155.00
IUUC-Tme-127043	Tuber melanosporum	35.79	3.00e-45	174.00
IUUC-Tbe-127927	Tupaia belangeri	56.34	4.00e-88	316.00
IUUC-Ttr-129231	Tursiops truncatus	55.97	1.00e-87	315.00
IUUC-Uma-129578	Ustilago maydis	38.46	3.00e-49	187.00
IUUC-Vda-129730	Verticillium dahliae	30.90	8.00e-41	159.00
IUUC-Vpa-130677	Vicugna pacos	30.88	6.00e-12	63.50
IUUC-Vvi-130968	Vitis vinifera	40.91	7.00e-51	192.00
IUUC-Xtr-132203	Xenopus tropicalis	57.99	1.00e-89	321.00
IUUC-Xma-133972	Xiphophorus maculatus	54.48	5.00e-86	309.00
IUUC-Yli-134553	Yarrowia lipolytica	33.21	4.00e-38	150.00
IUUC-Zma-134941	Zea mays	37.88	8.00e-42	162.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence