iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA
Protein-protein Interaction
IID	iRefIndex	PINA	Mentha
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.20e-06	27.5	241	279

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC ++f d p+v+ C+H f++ C  k        +k+ +CP+C+
   Q: 241  CFICGNPFVD-PIVTKCKHYFCTGCALKS------FQKSSKCPICQ 279
           9*********.999***********7444......899999****7 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MDLFRKPKKR NAPVVRKKES SSDEDQDSEV KDVIQKRRRT NPMVQSTKQL DASTRRADNS 60
SDDSDDSDDN QDIAVATHSF AASGDAGPSG PRDQGATATL EVDTDYSHDA QAQFERVQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGATAATGGA TCTCTTCCGA AAACCGAAAA AGCGCAATGC ACCCGTCGTT CGTAAAAAGG 60
AAAGCTCAAG TGATGAGGAT CAAGATTCAG AAGTGAAGGA TGTGATTCAA AAGCGACGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000571--Znf_CCCH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50103--ZF_C3H1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00642--zf-CCCH

SMART

SM00184--RING
SM00356--ZnF_C3H1

Gene Ontology

GO:0005634--C:nucleus
GO:0005684--C:U2-type spliceosomal complex
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0045292--P:mRNA cis splicing, via spliceosome
GO:0016567--P:protein ubiquitination
GO:0034247--P:snoRNA splicing

KEGG

cel:CELE_K01G5.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000118	Aegilops tauschii	42.34	2.00e-44	171.00
IUUC-Aml-002002	Ailuropoda melanoleuca	46.42	8.00e-68	249.00
IUUC-Atr-003145	Amborella trichopoda	44.55	7.00e-43	166.00
IUUC-Apl-003440	Anas platyrhynchos	51.89	3.00e-65	239.00
IUUC-Aca-004421	Anolis carolinensis	50.00	4.00e-70	256.00
IUUC-Aly-006121	Arabidopsis lyrata	45.00	5.00e-46	176.00
IUUC-Ath-007493	Arabidopsis thaliana	45.45	5.00e-47	179.00
IUUC-Ago-007731	Ashbya gossypii	37.19	2.00e-27	114.00
IUUC-Acl-008186	Aspergillus clavatus	39.78	2.00e-36	145.00
IUUC-Afl-008484	Aspergillus flavus	35.96	7.00e-32	130.00
IUUC-Afu-008971	Aspergillus fumigatus	35.18	9.00e-38	149.00
IUUC-Ani-009499	Aspergillus nidulans	38.98	2.00e-34	138.00
IUUC-Ang-009717	Aspergillus niger	42.21	1.00e-33	135.00
IUUC-Aor-009898	Aspergillus oryzae	35.96	9.00e-32	129.00
IUUC-Ate-010508	Aspergillus terreus	38.33	2.00e-32	131.00
IUUC-Ame-011925	Astyanax mexicanus	51.13	1.00e-67	248.00
IUUC-Bgr-012259	Blumeria graminis	47.26	9.00e-37	145.00
IUUC-Bta-012490	Bos taurus	44.59	7.00e-68	249.00
IUUC-Bci-013882	Botrytis cinerea	42.76	3.00e-34	137.00
IUUC-Bdi-014084	Brachypodium distachyon	42.60	1.00e-43	169.00
IUUC-Bol-016607	Brassica oleracea	44.29	1.00e-43	169.00
IUUC-Bra-017747	Brassica rapa	44.29	1.00e-43	169.00
IUUC-Cja-019434	Callithrix jacchus	47.17	3.00e-68	250.00
IUUC-Cfa-020902	Canis familiaris	46.84	9.00e-68	248.00
IUUC-Cre-022885	Chlamydomonas reinhardtii	37.97	5.00e-37	146.00
IUUC-Csa-023933	Chlorocebus sabaeus	50.00	1.00e-59	222.00
IUUC-Cho-024587	Choloepus hoffmanni	43.43	2.00e-52	197.00
IUUC-Cin-025328	Ciona intestinalis	53.85	4.00e-67	246.00
IUUC-Csv-026148	Ciona savignyi	53.39	2.00e-68	251.00
IUUC-Cgl-026700	Colletotrichum gloeosporioides	41.22	2.00e-29	121.00
IUUC-Cne-026816	Cryptococcus neoformans	41.21	2.00e-34	138.00
IUUC-Dre-027744	Danio rerio	54.05	3.00e-70	256.00
IUUC-Dse-031155	Dothistroma septosporum	44.06	2.00e-31	127.00
IUUC-Dme-031788	Drosophila melanogaster	49.82	6.00e-67	246.00
IUUC-Ete-033013	Echinops telfairi	47.17	1.00e-67	248.00
IUUC-Eca-033460	Equus caballus	47.17	1.00e-68	251.00
IUUC-Fca-035525	Felis catus	46.79	4.00e-69	253.00
IUUC-Fal-037206	Ficedula albicollis	45.70	2.00e-69	254.00
IUUC-Fox-037959	Fusarium oxysporum	39.46	3.00e-30	124.00
IUUC-Fso-038265	Fusarium solani	43.17	4.00e-31	127.00
IUUC-Gmo-038718	Gadus morhua	43.91	5.00e-66	243.00
IUUC-Ggr-040114	Gaeumannomyces graminis	38.85	1.00e-33	135.00
IUUC-Gga-041037	Gallus gallus	48.15	2.00e-70	258.00
IUUC-Gac-042103	Gasterosteus aculeatus	48.45	3.00e-72	264.00
IUUC-Gma-043581	Glycine max	43.24	2.00e-46	178.00
IUUC-Ggo-044906	Gorilla gorilla	47.55	1.00e-68	251.00
IUUC-Hsa-047000	Homo sapiens	47.55	1.00e-68	251.00
IUUC-Hvu-047578	Hordeum vulgare	43.40	4.00e-19	85.10
IUUC-Itr-048102	Ictidomys tridecemlineatus	47.55	7.00e-69	252.00
IUUC-Kpa-049320	Komagataella pastoris	36.96	1.00e-25	108.00
IUUC-Lch-050488	Latimeria chalumnae	50.00	4.00e-74	270.00
IUUC-Lpe-051156	Leersia perrieri	39.91	7.00e-40	156.00
IUUC-Loc-052670	Lepisosteus oculatus	47.78	7.00e-72	262.00
IUUC-Lma-053326	Leptosphaeria maculans	33.89	9.00e-32	130.00
IUUC-Laf-053570	Loxodonta africana	44.12	4.00e-70	256.00
IUUC-Mcc-055375	Macaca mulatta	47.55	1.00e-68	251.00
IUUC-Meu-056191	Macropus eugenii	47.92	2.00e-69	254.00
IUUC-Mor-057193	Magnaporthe oryzae	40.38	6.00e-34	136.00
IUUC-Mpo-057603	Magnaporthe poae	37.97	4.00e-34	137.00
IUUC-Mtr-058182	Medicago truncatula	45.05	3.00e-46	177.00
IUUC-Mla-058921	Melampsora laricipopulina	39.86	2.00e-26	110.00
IUUC-Mga-059281	Meleagris gallopavo	48.13	1.00e-70	258.00
IUUC-Mvi-060317	Microbotryum violaceum	46.85	6.00e-31	127.00
IUUC-Mmr-061744	Microcebus murinus	52.73	2.00e-67	248.00
IUUC-Mmu-063426	Mus musculus	44.26	2.00e-69	254.00
IUUC-Mac-065265	Musa acuminata	42.60	2.00e-40	158.00
IUUC-Mpu-066867	Mustela putorius furo	46.42	7.00e-68	249.00
IUUC-Mlu-067828	Myotis lucifugus	46.44	2.00e-67	248.00
IUUC-Nfi-068575	Neosartorya fischeri	33.86	2.00e-34	138.00
IUUC-Ncr-068828	Neurospora crassa	38.31	3.00e-32	130.00
IUUC-Nle-069137	Nomascus leucogenys	47.55	8.00e-69	252.00
IUUC-Ont-071497	Oreochromis niloticus	47.02	5.00e-73	266.00
IUUC-Oan-073182	Ornithorhynchus anatinus	46.89	1.00e-68	251.00
IUUC-Ocu-073949	Oryctolagus cuniculus	46.79	2.00e-68	251.00
IUUC-Oba-075693	Oryza barthii	40.09	1.00e-39	155.00
IUUC-Obr-076128	Oryza brachyantha	39.06	4.00e-39	153.00
IUUC-Ogl-077323	Oryza glaberrima	40.09	1.00e-39	155.00
IUUC-Ogu-078766	Oryza glumaepatula	40.09	1.00e-39	155.00
IUUC-Oin-080054	Oryza indica	40.09	1.00e-39	155.00
IUUC-Olo-080325	Oryza longistaminata	40.10	3.00e-34	138.00
IUUC-Ome-081331	Oryza meridionalis	39.91	6.00e-40	156.00
IUUC-Oni-082786	Oryza nivara	40.09	1.00e-39	155.00
IUUC-Opu-083855	Oryza punctata	40.44	8.00e-40	155.00
IUUC-Oru-084304	Oryza rufipogon	40.09	1.00e-39	155.00
IUUC-Osa-086166	Oryza sativa	40.09	1.00e-39	155.00
IUUC-Ola-086368	Oryzias latipes	42.81	5.00e-64	236.00
IUUC-Olu-087624	Ostreococcus lucimarinus	36.13	2.00e-35	140.00
IUUC-Oga-088080	Otolemur garnettii	46.79	5.00e-68	249.00
IUUC-Oar-089934	Ovis aries	44.59	5.00e-68	249.00
IUUC-Ptr-090827	Pan troglodytes	47.55	1.00e-68	252.00
IUUC-Pan-092245	Papio anubis	47.55	1.00e-68	251.00
IUUC-Psi-093790	Pelodiscus sinensis	47.50	3.00e-71	260.00
IUUC-Pma-094326	Petromyzon marinus	49.82	3.00e-72	263.00
IUUC-Pno-095057	Phaeosphaeria nodorum	32.34	3.00e-32	130.00
IUUC-Ppa-095690	Physcomitrella patens	39.64	1.00e-41	161.00
IUUC-Pfo-097026	Poecilia formosa	47.68	2.00e-74	271.00
IUUC-Pab-098689	Pongo abelii	47.55	2.00e-68	251.00
IUUC-Pca-100687	Procavia capensis	47.17	3.00e-63	234.00
IUUC-Ppe-101155	Prunus persica	44.09	5.00e-46	176.00
IUUC-Pgr-103440	Puccinia graminis	46.43	6.00e-37	146.00
IUUC-Ptt-103893	Puccinia triticina	35.00	1.00e-22	99.00
IUUC-Pte-104377	Pyrenophora teres	36.07	3.00e-35	140.00
IUUC-Pyt-104731	Pyrenophora triticirepentis	35.62	5.00e-34	136.00
IUUC-Rno-105967	Rattus norvegicus	44.55	1.00e-68	251.00
IUUC-Sce-106215	Saccharomyces cerevisiae	39.46	2.00e-29	121.00
IUUC-Sha-107587	Sarcophilus harrisii	51.82	3.00e-64	237.00
IUUC-Sja-107955	Schizosaccharomyces japonicus	41.33	6.00e-32	130.00
IUUC-Spo-108336	Schizosaccharomyces pombe	30.18	6.00e-27	114.00
IUUC-Smo-108930	Selaginella moellendorffii	35.27	2.00e-39	154.00
IUUC-Sit-110234	Setaria italica	41.41	2.00e-41	161.00
IUUC-Sly-111790	Solanum lycopersicum	48.00	2.00e-37	146.00
IUUC-Stu-111994	Solanum tuberosum	44.59	3.00e-46	177.00
IUUC-Sar-113374	Sorex araneus	47.17	1.00e-67	248.00
IUUC-Sbi-114766	Sorghum bicolor	40.00	7.00e-41	159.00
IUUC-Sre-115021	Sporisorium reilianum	42.94	2.00e-37	148.00
IUUC-Ssc-115474	Sus scrofa	46.42	6.00e-68	249.00
IUUC-Tgu-116649	Taeniopygia guttata	46.20	5.00e-73	266.00
IUUC-Tru-117701	Takifugu rubripes	53.36	1.00e-69	255.00
IUUC-Tni-120607	Tetraodon nigroviridis	46.36	2.00e-68	251.00
IUUC-Tca-121278	Theobroma cacao	36.42	3.00e-38	151.00
IUUC-Tre-122006	Trichoderma reesei	34.67	4.00e-26	110.00
IUUC-Tvi-122670	Trichoderma virens	38.51	5.00e-32	130.00
IUUC-Tae-122716	Triticum aestivum	43.69	4.00e-44	170.00
IUUC-Tur-126208	Triticum urartu	44.59	6.00e-44	169.00
IUUC-Tme-126908	Tuber melanosporum	44.36	2.00e-30	125.00
IUUC-Tbe-127394	Tupaia belangeri	46.79	3.00e-68	250.00
IUUC-Uma-129339	Ustilago maydis	34.60	9.00e-39	152.00
IUUC-Vda-129895	Verticillium dahliae	40.14	8.00e-34	136.00
IUUC-Vpa-130519	Vicugna pacos	45.28	1.00e-66	245.00
IUUC-Vvi-131382	Vitis vinifera	35.90	2.00e-44	171.00
IUUC-Xtr-131923	Xenopus tropicalis	45.90	7.00e-72	262.00
IUUC-Xma-133705	Xiphophorus maculatus	47.35	9.00e-75	272.00
IUUC-Yli-134518	Yarrowia lipolytica	41.48	3.00e-28	117.00
IUUC-Zma-135029	Zea mays	50.00	3.00e-36	144.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence