iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135929

Ensembl Protein ID

Zm00001d053738_T001

UniProt Accession

B6T790; B6T790_MAIZE

Genbank Protein ID

ACG32973.1; ACR38049.1; AQK60239.1; AQK60240.1

Protein Name

DNA repair protein RAD23-1; Ubiquitin receptor RAD23b

Genbank Nucleotide ID

EU960855; BT087696; CM000780; CM000780

Gene Name

ZEAMMB73_Zm00001d053738

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d053738	Zm00001d053738_T001	Zm00001d053738_T001
Zm00001d053738	Zm00001d053738_T002	Zm00001d053738_T002

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.80e-23	83.9	148	186
ULD/UDP/UBQ/UBQ_PIM	1.40e-22	81.3	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 6    kleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +++ql+eMG   +d++++++aLraa+nn+e+AveyL++g
   Q: 148  IINQLMEMGggsWDKDKVQRALRAAYNNPERAVEYLYSG 186
           89**********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktlkg++fe++v+++dt+ ++K++i++ +g   +p  qq LI++Gk+LkD++tL+e++++++ +++++++k k
   Q: 1    MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGkdsYPWGQQLLIFNGKVLKDESTLEENKVNEDGFLVVMLSKGK 78
           99***********************************************************************99976 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MKLTVKTLKG THFEIRVQPN DTIMAVKKNI EEIQGKDSYP WGQQLLIFNG KVLKDESTLE 60
ENKVNEDGFL VVMLSKGKTS GSTGTSSSQH SNTPATRQAP PLEAPQQAPQ PPVAPITTSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCGGTGCT ATTCGCCCCC CAAACTCCGG ACGAGCCTTC CGCGCGACGC TGCACGGCTC 60
CGCCAGCCAC CCGTAAAACC CTAGACGGCT AGCCGGCGCA CGGAAGCGGG CAGCGGAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0675--Receptor
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

zma:100282427

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	67.01	1.00e-120	425.00
IUUC-Aml-001195	Ailuropoda melanoleuca	33.84	5.00e-25	108.00
IUUC-Atr-002756	Amborella trichopoda	63.44	4.00e-110	390.00
IUUC-Aca-004704	Anolis carolinensis	31.55	1.00e-36	146.00
IUUC-Aly-006159	Arabidopsis lyrata	64.13	1.00e-115	409.00
IUUC-Ath-006674	Arabidopsis thaliana	66.95	3.00e-81	295.00
IUUC-Ani-009460	Aspergillus nidulans	39.18	2.00e-29	122.00
IUUC-Ate-010458	Aspergillus terreus	40.80	7.00e-36	144.00
IUUC-Bta-012922	Bos taurus	34.68	1.00e-26	113.00
IUUC-Bdi-014355	Brachypodium distachyon	80.49	2.00e-153	535.00
IUUC-Bol-015272	Brassica oleracea	61.25	2.00e-108	385.00
IUUC-Bra-016970	Brassica rapa	62.50	1.00e-110	392.00
IUUC-Cel-018364	Caenorhabditis elegans	27.30	7.00e-17	80.90
IUUC-Cja-018946	Callithrix jacchus	32.12	2.00e-38	152.00
IUUC-Cfa-020683	Canis familiaris	33.57	2.00e-26	112.00
IUUC-Cpo-022145	Cavia porcellus	35.68	9.00e-29	120.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	37.90	2.00e-19	89.40
IUUC-Csa-023714	Chlorocebus sabaeus	33.10	6.00e-29	121.00
IUUC-Cin-025741	Ciona intestinalis	25.96	8.00e-21	94.00
IUUC-Csv-025823	Ciona savignyi	27.27	5.00e-24	103.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	45.10	1.00e-16	80.10
IUUC-Cme-027260	Cyanidioschyzon merolae	25.71	2.00e-25	109.00
IUUC-Dre-028369	Danio rerio	34.30	3.00e-34	139.00
IUUC-Dno-029543	Dasypus novemcinctus	33.73	2.00e-27	116.00
IUUC-Dor-030358	Dipodomys ordii	36.17	4.00e-30	124.00
IUUC-Dse-031336	Dothistroma septosporum	46.77	2.00e-18	85.90
IUUC-Dme-032027	Drosophila melanogaster	29.03	2.00e-38	152.00
IUUC-Ete-032583	Echinops telfairi	34.30	8.00e-18	84.30
IUUC-Eca-033599	Equus caballus	32.60	2.00e-35	142.00
IUUC-Eeu-034721	Erinaceus europaeus	32.72	5.00e-15	74.70
IUUC-Fox-037960	Fusarium oxysporum	48.41	2.00e-20	92.80
IUUC-Fso-038107	Fusarium solani	46.77	2.00e-19	89.40
IUUC-Gmo-038528	Gadus morhua	30.92	4.00e-37	147.00
IUUC-Gga-040133	Gallus gallus	36.97	1.00e-23	103.00
IUUC-Gac-042298	Gasterosteus aculeatus	29.16	2.00e-35	142.00
IUUC-Gma-044245	Glycine max	62.80	2.00e-122	431.00
IUUC-Ggo-045125	Gorilla gorilla	32.83	1.00e-26	113.00
IUUC-Hsa-046519	Homo sapiens	32.83	1.00e-26	113.00
IUUC-Hvu-047738	Hordeum vulgare	74.56	4.00e-99	353.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	33.08	5.00e-46	177.00
IUUC-Lch-050563	Latimeria chalumnae	32.75	2.00e-35	142.00
IUUC-Lpe-051168	Leersia perrieri	72.51	8.00e-142	495.00
IUUC-Lma-053328	Leptosphaeria maculans	39.19	6.00e-10	54.70
IUUC-Laf-054589	Loxodonta africana	31.41	9.00e-42	163.00
IUUC-Mcc-055860	Macaca mulatta	37.87	3.00e-32	132.00
IUUC-Meu-056459	Macropus eugenii	38.56	4.00e-34	138.00
IUUC-Mor-057287	Magnaporthe oryzae	47.90	7.00e-18	84.30
IUUC-Mpo-057609	Magnaporthe poae	46.51	1.00e-19	90.10
IUUC-Mtr-058239	Medicago truncatula	61.60	4.00e-111	394.00
IUUC-Mla-058961	Melampsora laricipopulina	42.54	4.00e-24	105.00
IUUC-Mmr-061159	Microcebus murinus	33.60	3.00e-26	112.00
IUUC-Mdo-062742	Monodelphis domestica	33.16	4.00e-48	184.00
IUUC-Mmu-063258	Mus musculus	33.58	2.00e-27	115.00
IUUC-Mac-064468	Musa acuminata	65.73	2.00e-126	445.00
IUUC-Mpu-066684	Mustela putorius furo	38.14	4.00e-32	131.00
IUUC-Mlu-067787	Myotis lucifugus	33.16	1.00e-43	169.00
IUUC-Nle-069655	Nomascus leucogenys	32.62	6.00e-28	117.00
IUUC-Opr-070234	Ochotona princeps	44.23	2.00e-08	52.80
IUUC-Ont-072484	Oreochromis niloticus	30.77	3.00e-38	152.00
IUUC-Oan-073572	Ornithorhynchus anatinus	32.90	3.00e-43	168.00
IUUC-Ocu-074831	Oryctolagus cuniculus	33.60	2.00e-26	112.00
IUUC-Oba-074972	Oryza barthii	73.64	5.00e-146	509.00
IUUC-Obr-076909	Oryza brachyantha	80.54	2.00e-148	518.00
IUUC-Ogl-077067	Oryza glaberrima	78.38	5.00e-157	546.00
IUUC-Ogu-078023	Oryza glumaepatula	79.22	3.00e-137	481.00
IUUC-Oin-079203	Oryza indica	79.67	5.00e-158	549.00
IUUC-Olo-080559	Oryza longistaminata	76.15	4.00e-150	523.00
IUUC-Oni-082812	Oryza nivara	73.64	1.00e-145	508.00
IUUC-Opu-083963	Oryza punctata	76.15	8.00e-139	486.00
IUUC-Oru-084942	Oryza rufipogon	72.25	5.00e-133	466.00
IUUC-Osa-085951	Oryza sativa	79.95	5.00e-158	549.00
IUUC-Ola-086540	Oryzias latipes	35.69	9.00e-31	127.00
IUUC-Olu-087843	Ostreococcus lucimarinus	41.00	2.00e-39	155.00
IUUC-Oga-088023	Otolemur garnettii	33.20	6.00e-27	114.00
IUUC-Oar-090387	Ovis aries	35.29	3.00e-30	125.00
IUUC-Ptr-091165	Pan troglodytes	32.83	1.00e-26	113.00
IUUC-Pan-092009	Papio anubis	32.28	2.00e-26	112.00
IUUC-Pfo-096607	Poecilia formosa	34.05	1.00e-41	163.00
IUUC-Pab-097738	Pongo abelii	32.04	1.00e-37	149.00
IUUC-Pop-100054	Populus trichocarpa	59.68	2.00e-109	388.00
IUUC-Pca-100348	Procavia capensis	37.02	2.00e-32	132.00
IUUC-Ppe-101522	Prunus persica	63.44	3.00e-118	417.00
IUUC-Pva-102412	Pteropus vampyrus	37.71	2.00e-32	132.00
IUUC-Pte-104303	Pyrenophora teres	47.29	5.00e-20	91.30
IUUC-Pyt-104580	Pyrenophora triticirepentis	47.29	6.00e-20	90.90
IUUC-Rno-105569	Rattus norvegicus	37.45	2.00e-32	132.00
IUUC-Sha-107073	Sarcophilus harrisii	34.55	9.00e-25	107.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	32.92	1.00e-42	166.00
IUUC-Spo-108298	Schizosaccharomyces pombe	34.20	3.00e-40	158.00
IUUC-Smo-109518	Selaginella moellendorffii	53.56	3.00e-83	301.00
IUUC-Sit-109813	Setaria italica	82.70	2.00e-153	534.00
IUUC-Sly-111349	Solanum lycopersicum	64.95	4.00e-118	417.00
IUUC-Stu-112306	Solanum tuberosum	63.96	5.00e-111	393.00
IUUC-Sbi-114459	Sorghum bicolor	95.12	4.00e-172	596.00
IUUC-Ssc-115460	Sus scrofa	32.38	3.00e-44	172.00
IUUC-Tru-118651	Takifugu rubripes	33.83	4.00e-32	131.00
IUUC-Tca-121594	Theobroma cacao	65.32	6.00e-116	409.00
IUUC-Tae-123231	Triticum aestivum	82.11	4.00e-148	516.00
IUUC-Tur-126144	Triticum urartu	67.20	5.00e-131	460.00
IUUC-Ttr-128464	Tursiops truncatus	35.48	1.00e-26	113.00
IUUC-Vda-129946	Verticillium dahliae	46.56	5.00e-21	94.70
IUUC-Vpa-130357	Vicugna pacos	31.22	2.00e-14	72.80
IUUC-Xtr-132679	Xenopus tropicalis	29.24	8.00e-23	100.00
IUUC-Yli-134615	Yarrowia lipolytica	42.67	1.00e-34	139.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence