iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Meu-056643

Ensembl Protein ID

ENSMEUP00000007759.1

UniProt Accession

W8CEM9; W8CEM9_MACEU

Genbank Protein ID

JAC06640.1

Protein Name

KDM5D

Genbank Nucleotide ID

GATO01000006

Gene Name

KDM5D

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMEUG00000008450.1	ENSMEUT00000008510.1	ENSMEUP00000007759.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.80e-11	42.3	276	322

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vC +C++g+ed+ +l+ C+ C++++H  Cl ++  +e p+   w CpkC 
   Q: 276  VCRMCTRGDEDD-KLLLCDGCDDNYHIFCLLPP-LPEIPKGI-WRCPKCV 322
           8*********88.6*******************.*******7.******6 PP

Organism

Macropus eugenii

Protein Sequence
(Fasta)

DWQPPFAVEV DNFRFTPRIQ RLNELEXXXX XXXXXXXXXX KFWEIQGSSL KIPNVERRIL 60
DLYSLSKIVV EEGGYEAISK DRRWARVAQR LNYPAGKNIG SLLRSHYERI VYPYEMYQSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACTGGCAGC CTCCCTTTGC TGTGGAAGTG GACAACTTCA GGTTCACCCC CCGGATCCAG 60
AGGCTGAATG AACTGGAGGT AAAAAGAAAG GGTTAGGGCT GCGGAGGCAG AGAAAAAGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0479--Metal-binding
KW-0539--Nucleus
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000552	Aegilops tauschii	31.94	3.00e-98	353.00
IUUC-Aml-001327	Ailuropoda melanoleuca	83.31	0.00e+00	2183.00
IUUC-Atr-002595	Amborella trichopoda	32.33	3.00e-99	357.00
IUUC-Apl-004141	Anas platyrhynchos	55.77	0.00e+00	1402.00
IUUC-Aca-004712	Anolis carolinensis	78.56	0.00e+00	1972.00
IUUC-Acl-008162	Aspergillus clavatus	33.21	3.00e-106	380.00
IUUC-Afl-008625	Aspergillus flavus	30.21	4.00e-111	396.00
IUUC-Afu-008796	Aspergillus fumigatus	34.17	4.00e-108	386.00
IUUC-Ani-009139	Aspergillus nidulans	33.45	2.00e-103	370.00
IUUC-Aor-010155	Aspergillus oryzae	30.21	5.00e-111	396.00
IUUC-Ate-010453	Aspergillus terreus	32.49	7.00e-102	365.00
IUUC-Ame-011323	Astyanax mexicanus	57.06	0.00e+00	1214.00
IUUC-Bgr-012241	Blumeria graminis	32.27	9.00e-104	372.00
IUUC-Bta-013099	Bos taurus	84.51	0.00e+00	2181.00
IUUC-Bci-013992	Botrytis cinerea	29.87	2.00e-105	377.00
IUUC-Bdi-014050	Brachypodium distachyon	31.18	8.00e-99	355.00
IUUC-Bol-015336	Brassica oleracea	34.62	1.00e-13	73.20
IUUC-Cja-018723	Callithrix jacchus	83.63	0.00e+00	2094.00
IUUC-Cfa-020954	Canis familiaris	84.48	0.00e+00	2199.00
IUUC-Cpo-021718	Cavia porcellus	91.99	0.00e+00	1187.00
IUUC-Csa-023946	Chlorocebus sabaeus	85.53	0.00e+00	2211.00
IUUC-Cho-024280	Choloepus hoffmanni	52.52	0.00e+00	1233.00
IUUC-Cin-025321	Ciona intestinalis	46.47	0.00e+00	1011.00
IUUC-Csv-026185	Ciona savignyi	43.96	0.00e+00	1040.00
IUUC-Cgl-026613	Colletotrichum gloeosporioides	31.39	7.00e-101	362.00
IUUC-Cne-026851	Cryptococcus neoformans	29.08	1.00e-105	378.00
IUUC-Dre-028238	Danio rerio	60.72	0.00e+00	1746.00
IUUC-Dno-029435	Dasypus novemcinctus	84.71	0.00e+00	2177.00
IUUC-Dor-030226	Dipodomys ordii	82.56	0.00e+00	1616.00
IUUC-Dse-031479	Dothistroma septosporum	29.90	4.00e-118	419.00
IUUC-Dme-032021	Drosophila melanogaster	43.11	0.00e+00	1005.00
IUUC-Eca-033834	Equus caballus	84.46	0.00e+00	2222.00
IUUC-Eeu-034692	Erinaceus europaeus	84.05	0.00e+00	1732.00
IUUC-Fca-035766	Felis catus	81.31	0.00e+00	2078.00
IUUC-Fal-037078	Ficedula albicollis	55.93	0.00e+00	1376.00
IUUC-Fox-037694	Fusarium oxysporum	31.67	2.00e-97	350.00
IUUC-Fso-038127	Fusarium solani	30.07	1.00e-110	394.00
IUUC-Gmo-039140	Gadus morhua	68.91	0.00e+00	1571.00
IUUC-Ggr-039929	Gaeumannomyces graminis	31.39	4.00e-100	360.00
IUUC-Gga-040466	Gallus gallus	55.66	0.00e+00	1392.00
IUUC-Gac-041825	Gasterosteus aculeatus	62.58	0.00e+00	1682.00
IUUC-Gma-042675	Glycine max	33.33	1.00e-102	368.00
IUUC-Ggo-045492	Gorilla gorilla	84.68	0.00e+00	2229.00
IUUC-Hsa-046737	Homo sapiens	84.68	0.00e+00	2216.00
IUUC-Itr-048348	Ictidomys tridecemlineatus	84.16	0.00e+00	2250.00
IUUC-Kpa-049245	Komagataella pastoris	21.61	2.00e-19	91.70
IUUC-Lch-050517	Latimeria chalumnae	73.78	0.00e+00	1977.00
IUUC-Lpe-051537	Leersia perrieri	40.68	3.00e-88	320.00
IUUC-Loc-051963	Lepisosteus oculatus	54.02	0.00e+00	1283.00
IUUC-Laf-054098	Loxodonta africana	78.83	0.00e+00	2019.00
IUUC-Mcc-055740	Macaca mulatta	84.68	0.00e+00	2227.00
IUUC-Mor-057198	Magnaporthe oryzae	32.59	2.00e-110	394.00
IUUC-Mpo-057317	Magnaporthe poae	33.10	2.00e-99	357.00
IUUC-Mtr-058113	Medicago truncatula	33.12	7.00e-99	355.00
IUUC-Mga-059358	Meleagris gallopavo	48.48	0.00e+00	1229.00
IUUC-Mmr-061032	Microcebus murinus	84.74	0.00e+00	2202.00
IUUC-Mdo-062754	Monodelphis domestica	84.92	0.00e+00	2288.00
IUUC-Mmu-063943	Mus musculus	84.07	0.00e+00	2234.00
IUUC-Mpu-066800	Mustela putorius furo	84.12	0.00e+00	2186.00
IUUC-Mlu-067109	Myotis lucifugus	84.23	0.00e+00	2199.00
IUUC-Nfi-068430	Neosartorya fischeri	33.73	6.00e-107	382.00
IUUC-Ncr-068763	Neurospora crassa	29.09	3.00e-108	387.00
IUUC-Nle-069569	Nomascus leucogenys	86.08	0.00e+00	2160.00
IUUC-Opr-071002	Ochotona princeps	57.22	0.00e+00	677.00
IUUC-Ont-072274	Oreochromis niloticus	63.48	0.00e+00	1721.00
IUUC-Oan-073160	Ornithorhynchus anatinus	85.88	0.00e+00	2247.00
IUUC-Ocu-074440	Oryctolagus cuniculus	84.46	0.00e+00	2200.00
IUUC-Oba-075388	Oryza barthii	35.76	3.00e-69	257.00
IUUC-Obr-076296	Oryza brachyantha	37.16	8.00e-85	309.00
IUUC-Ogl-077886	Oryza glaberrima	36.79	7.00e-16	79.30
IUUC-Ogu-079040	Oryza glumaepatula	36.09	3.00e-69	257.00
IUUC-Oin-079273	Oryza indica	37.84	1.00e-13	68.90
IUUC-Olo-080668	Oryza longistaminata	36.79	2.00e-15	79.00
IUUC-Ome-081764	Oryza meridionalis	39.64	3.00e-86	313.00
IUUC-Oni-083012	Oryza nivara	36.09	3.00e-69	257.00
IUUC-Opu-083164	Oryza punctata	31.23	1.00e-86	315.00
IUUC-Oru-084630	Oryza rufipogon	36.09	4.00e-69	256.00
IUUC-Osa-085487	Oryza sativa	36.79	7.00e-16	79.30
IUUC-Ola-087059	Oryzias latipes	63.69	0.00e+00	1715.00
IUUC-Oga-088191	Otolemur garnettii	84.76	0.00e+00	2219.00
IUUC-Oar-090027	Ovis aries	84.51	0.00e+00	2180.00
IUUC-Ptr-091415	Pan troglodytes	78.70	0.00e+00	2073.00
IUUC-Pan-091829	Papio anubis	85.01	0.00e+00	2228.00
IUUC-Psi-093550	Pelodiscus sinensis	55.93	0.00e+00	1371.00
IUUC-Pma-094137	Petromyzon marinus	50.80	0.00e+00	1280.00
IUUC-Pno-094879	Phaeosphaeria nodorum	30.19	2.00e-113	404.00
IUUC-Pfo-096645	Poecilia formosa	62.32	0.00e+00	1649.00
IUUC-Pab-097582	Pongo abelii	85.61	0.00e+00	2052.00
IUUC-Pca-100446	Procavia capensis	81.89	0.00e+00	2143.00
IUUC-Ppe-101504	Prunus persica	32.55	2.00e-102	367.00
IUUC-Pva-102553	Pteropus vampyrus	86.41	0.00e+00	1410.00
IUUC-Pte-104195	Pyrenophora teres	31.31	2.00e-113	404.00
IUUC-Pyt-104566	Pyrenophora triticirepentis	30.83	7.00e-114	405.00
IUUC-Rno-105359	Rattus norvegicus	74.06	0.00e+00	2062.00
IUUC-Sce-106207	Saccharomyces cerevisiae	34.87	4.00e-71	262.00
IUUC-Sha-106769	Sarcophilus harrisii	94.15	0.00e+00	2268.00
IUUC-Sja-107970	Schizosaccharomyces japonicus	21.82	3.00e-37	150.00
IUUC-Spo-108283	Schizosaccharomyces pombe	22.05	1.00e-44	175.00
IUUC-Ssl-108489	Sclerotinia sclerotiorum	30.97	3.00e-115	410.00
IUUC-Sit-110534	Setaria italica	42.12	3.00e-95	343.00
IUUC-Sly-111298	Solanum lycopersicum	31.52	3.00e-100	360.00
IUUC-Stu-112523	Solanum tuberosum	43.75	2.00e-12	65.50
IUUC-Sar-113052	Sorex araneus	54.81	0.00e+00	1358.00
IUUC-Sbi-113816	Sorghum bicolor	47.06	9.00e-13	68.90
IUUC-Sre-115161	Sporisorium reilianum	30.35	7.00e-119	422.00
IUUC-Ssc-116354	Sus scrofa	84.47	0.00e+00	2236.00
IUUC-Tgu-116613	Taeniopygia guttata	55.77	0.00e+00	1371.00
IUUC-Tru-117667	Takifugu rubripes	63.38	0.00e+00	1543.00
IUUC-Tni-119920	Tetraodon nigroviridis	63.53	0.00e+00	1684.00
IUUC-Tca-121478	Theobroma cacao	31.57	3.00e-105	377.00
IUUC-Tre-122213	Trichoderma reesei	29.66	2.00e-105	377.00
IUUC-Tvi-122263	Trichoderma virens	29.25	1.00e-102	368.00
IUUC-Tae-125894	Triticum aestivum	31.87	6.00e-100	359.00
IUUC-Tur-126632	Triticum urartu	31.54	2.00e-98	354.00
IUUC-Tme-127087	Tuber melanosporum	30.91	4.00e-123	436.00
IUUC-Tbe-128040	Tupaia belangeri	92.77	0.00e+00	1014.00
IUUC-Ttr-128979	Tursiops truncatus	84.05	0.00e+00	2216.00
IUUC-Uma-129590	Ustilago maydis	32.29	1.00e-112	402.00
IUUC-Vda-129733	Verticillium dahliae	29.18	2.00e-99	357.00
IUUC-Vpa-130433	Vicugna pacos	89.50	0.00e+00	1639.00
IUUC-Vvi-131071	Vitis vinifera	31.15	5.00e-83	303.00
IUUC-Xtr-132324	Xenopus tropicalis	67.52	0.00e+00	1783.00
IUUC-Xma-134315	Xiphophorus maculatus	63.15	0.00e+00	1724.00
IUUC-Zma-135829	Zea mays	41.22	5.00e-94	339.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence