iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-040357

Ensembl Protein ID

ENSGALP00000020470.2

UniProt Accession

O12940; O12941; TOM1_CHICK

Genbank Protein ID

CAA69995.1; CAA69996.1

Protein Name

Target of Myb protein 1

Genbank Nucleotide ID

Y08740; Y08741

Gene Name

TOM1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000012552.5	ENSGALT00000020498.2	ENSGALP00000020470.2
ENSGALG00000012552.5	ENSGALT00000088480.1	ENSGALP00000060965.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/VHS	1.50e-49	167.8	20	152
UBD/Alpha-Helix/GAT	2.50e-26	92.6	213	302

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/VHS

   S: 1    atselvtsedwelileicdliqetkegakdalralrkri.nnknphvalraLtlLdscvsnCgkkfhvevaskdllee..lrell.kne 85
           at+ ++  edw+l++eicd+i+et+eg+kda+ra++kri +nkn+h++++aLt+L++cv+nCg++fh +vas+d++e+  +r++l kn+
   Q: 20   ATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIvGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESvlVRTILpKNN 108
           68899999******************************99**************************************999******** PP
   S: 86   nepkvieKlkalivsWadelknepalslivaliktlkeeGlefp 129
           ++  v++K+++li+sWad+++++p+l+++va++++l+++Glefp
   Q: 109  PPAIVHDKVLTLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFP 152
           *******************************************8 PP

UBD/Alpha-Helix/GAT

   S: 37   kaekikkliseleevksnvkllnemlselspegeepednellqelyetckaarpkllklieeeedndellaellkanDelnqvlnkykq 125
           ++e+ikkl+sele v++nvk+++eml+el+p+++e +d ellqel++tc+a+++++l+li + ++ ++l++ell +nD+ln+v++++++
   Q: 213  TQEQIKKLRSELEVVNGNVKVMSEMLTELVPSQAETSDLELLQELNRTCRAMQQRVLELIPR-VQHEQLTEELLLINDNLNNVFLRHER 300
           579***********************************************************.*************************9 PP
   S: 126  lk 127
           ++
   Q: 301  FE 302
           97 PP

Organism

Gallus gallus

Functional Description
(View)

Belongs to the TOM1 family.

Protein Sequence
(Fasta)

MDFLLGNPFS SPVGQRIERA TDGSLRGEDW SLNMEICDII NETEEGPKDA FRAIKKRIVG 60
NKNFHEVMLA LTVLETCVKN CGHRFHILVA SQDFVESVLV RTILPKNNPP AIVHDKVLTL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGCGGCGC GATGGACTTT CTGCTGGGGA ACCCTTTCAG CTCCCCCGTG GGGCAGCGTA 60
TCGGTGAGTC CCTCGCCCTC GCGCGGCCCC CCGCGTCCCC GCTCCCTCTC CCCCGCGCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport

Interpro

IPR008942--ENTH_VHS
IPR004152--GAT_dom
IPR014645--TOM1
IPR002014--VHS_dom

PROSITE

PS50909--GAT
PS50179--VHS

Pfam

PF03127--GAT
PF00790--VHS

SMART

SM00288--VHS

Gene Ontology

GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0070062--C:extracellular exosome
GO:0016020--C:membrane
GO:0006886--P:intracellular protein transport

KEGG

gga:396049

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000135	Aegilops tauschii	32.30	4.00e-29	122.00
IUUC-Aml-001372	Ailuropoda melanoleuca	71.27	0.00e+00	694.00
IUUC-Apl-004197	Anas platyrhynchos	91.98	0.00e+00	860.00
IUUC-Aca-005277	Anolis carolinensis	77.11	0.00e+00	697.00
IUUC-Ame-010695	Astyanax mexicanus	53.73	2.00e-150	525.00
IUUC-Bta-013410	Bos taurus	72.88	0.00e+00	701.00
IUUC-Cja-018944	Callithrix jacchus	67.74	0.00e+00	645.00
IUUC-Cfa-021024	Canis familiaris	73.03	0.00e+00	693.00
IUUC-Cpo-021418	Cavia porcellus	69.17	0.00e+00	660.00
IUUC-Csa-023653	Chlorocebus sabaeus	73.85	0.00e+00	727.00
IUUC-Cho-024972	Choloepus hoffmanni	93.06	7.00e-38	150.00
IUUC-Dno-029610	Dasypus novemcinctus	75.90	6.00e-168	583.00
IUUC-Dor-030925	Dipodomys ordii	60.38	2.00e-155	542.00
IUUC-Eca-034207	Equus caballus	71.73	0.00e+00	686.00
IUUC-Eeu-035025	Erinaceus europaeus	65.79	1.00e-95	343.00
IUUC-Fca-036407	Felis catus	71.87	0.00e+00	627.00
IUUC-Fal-036809	Ficedula albicollis	91.77	0.00e+00	833.00
IUUC-Ggo-044454	Gorilla gorilla	71.78	0.00e+00	698.00
IUUC-Hsa-046652	Homo sapiens	72.69	0.00e+00	706.00
IUUC-Itr-049028	Ictidomys tridecemlineatus	68.88	0.00e+00	677.00
IUUC-Laf-054231	Loxodonta africana	73.96	1.00e-153	535.00
IUUC-Mcc-055475	Macaca mulatta	72.50	0.00e+00	702.00
IUUC-Meu-056002	Macropus eugenii	59.43	4.00e-137	480.00
IUUC-Mga-059199	Meleagris gallopavo	95.16	0.00e+00	910.00
IUUC-Mvi-060415	Microbotryum violaceum	30.56	1.00e-14	74.70
IUUC-Mmr-061193	Microcebus murinus	72.94	0.00e+00	683.00
IUUC-Mdo-062456	Monodelphis domestica	72.58	0.00e+00	645.00
IUUC-Mmu-063746	Mus musculus	72.69	0.00e+00	710.00
IUUC-Mpu-066772	Mustela putorius furo	73.51	0.00e+00	703.00
IUUC-Mlu-067475	Myotis lucifugus	70.41	6.00e-153	533.00
IUUC-Nle-068998	Nomascus leucogenys	70.89	0.00e+00	684.00
IUUC-Oan-073103	Ornithorhynchus anatinus	68.81	0.00e+00	651.00
IUUC-Ocu-073922	Oryctolagus cuniculus	72.59	0.00e+00	680.00
IUUC-Oga-089050	Otolemur garnettii	64.41	3.00e-173	601.00
IUUC-Oar-090246	Ovis aries	69.14	0.00e+00	647.00
IUUC-Ptr-090714	Pan troglodytes	72.36	0.00e+00	700.00
IUUC-Pan-092875	Papio anubis	72.50	0.00e+00	702.00
IUUC-Psi-094051	Pelodiscus sinensis	79.84	0.00e+00	793.00
IUUC-Pab-098291	Pongo abelii	71.87	0.00e+00	641.00
IUUC-Pca-100907	Procavia capensis	64.62	3.00e-164	571.00
IUUC-Pva-102610	Pteropus vampyrus	66.67	2.00e-177	615.00
IUUC-Rno-105809	Rattus norvegicus	71.73	0.00e+00	689.00
IUUC-Sha-107255	Sarcophilus harrisii	74.20	0.00e+00	650.00
IUUC-Ssl-108413	Sclerotinia sclerotiorum	37.67	2.00e-21	94.70
IUUC-Sre-115232	Sporisorium reilianum	31.82	6.00e-16	79.00
IUUC-Tgu-117517	Taeniopygia guttata	91.84	0.00e+00	870.00
IUUC-Ttr-128710	Tursiops truncatus	64.68	3.00e-178	617.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence