iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cre-022657

Ensembl Protein ID

EDP06091

UniProt Accession

A8IDI5; A8IDI5_CHLRE

Genbank Protein ID

EDP06091.1

Protein Name

Transcription factor TFIIH, 44 kDa subunit

Genbank Nucleotide ID

DS496116

Gene Name

TF2H2; CHLREDRAFT_127751

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_127751	EDP06091	EDP06091

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	36.18	2.00e-64	241.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MAAAERRDDL GIEDGDDDDI DENELRRQEE AYQRQYENEQ TWDQLQEDEH GNLFVDKTAE 60
QRARRQRLLS AAQSARIRKG MIRYVLLVVD LSRAASAQDL RPNRLGCMLS LCRSFVREFF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAATGAGAAG CATATCATTA CGCTCAACGC AGATACCACG CACGTCTCAT TACCAAGCGA 60
CTCACCGCCG GGCCTGCCGA GCACGGACTT GCTGCACACT CCAAAACCCG CACCTGCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS00028--ZINC_FINGER_C2H2_1

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005675--C:holo TFIIH complex
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated

KEGG

cre:CHLREDRAFT_127751

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	46.26	3.00e-61	226.00
IUUC-Aml-002041	Ailuropoda melanoleuca	42.03	1.00e-73	268.00
IUUC-Atr-003056	Amborella trichopoda	50.16	2.00e-82	296.00
IUUC-Apl-003464	Anas platyrhynchos	42.62	4.00e-72	263.00
IUUC-Aca-004745	Anolis carolinensis	43.30	1.00e-71	261.00
IUUC-Aly-005559	Arabidopsis lyrata	47.93	2.00e-94	337.00
IUUC-Ath-007556	Arabidopsis thaliana	47.93	1.00e-94	338.00
IUUC-Ago-007851	Ashbya gossypii	38.86	3.00e-70	257.00
IUUC-Acl-008100	Aspergillus clavatus	36.72	4.00e-65	239.00
IUUC-Afl-008649	Aspergillus flavus	42.19	5.00e-12	60.10
IUUC-Afu-009066	Aspergillus fumigatus	36.48	4.00e-68	249.00
IUUC-Ani-009372	Aspergillus nidulans	36.91	3.00e-65	240.00
IUUC-Ang-009726	Aspergillus niger	37.53	6.00e-71	259.00
IUUC-Aor-010135	Aspergillus oryzae	36.80	2.00e-64	238.00
IUUC-Ate-010399	Aspergillus terreus	36.48	6.00e-21	92.00
IUUC-Ame-011618	Astyanax mexicanus	40.91	2.00e-79	287.00
IUUC-Bgr-012154	Blumeria graminis	37.23	8.00e-68	249.00
IUUC-Bta-012353	Bos taurus	41.52	5.00e-73	266.00
IUUC-Bci-013932	Botrytis cinerea	38.30	2.00e-69	254.00
IUUC-Bdi-014391	Brachypodium distachyon	50.13	1.00e-97	348.00
IUUC-Bol-015128	Brassica oleracea	47.94	7.00e-96	342.00
IUUC-Bra-017932	Brassica rapa	47.94	9.00e-96	342.00
IUUC-Cel-018649	Caenorhabditis elegans	33.70	8.00e-52	195.00
IUUC-Cja-018776	Callithrix jacchus	42.53	2.00e-74	271.00
IUUC-Cfa-020584	Canis familiaris	42.28	1.00e-74	271.00
IUUC-Cpo-021300	Cavia porcellus	41.52	6.00e-73	265.00
IUUC-Csa-024092	Chlorocebus sabaeus	42.03	1.00e-73	268.00
IUUC-Cho-024919	Choloepus hoffmanni	41.36	2.00e-31	126.00
IUUC-Cin-025386	Ciona intestinalis	37.50	1.00e-70	258.00
IUUC-Csv-026295	Ciona savignyi	37.19	2.00e-71	260.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	35.54	7.00e-62	229.00
IUUC-Cne-026956	Cryptococcus neoformans	34.84	4.00e-62	230.00
IUUC-Cme-027150	Cyanidioschyzon merolae	34.34	2.00e-48	185.00
IUUC-Dre-027962	Danio rerio	40.76	5.00e-80	289.00
IUUC-Dno-029979	Dasypus novemcinctus	41.16	3.00e-65	240.00
IUUC-Dse-031405	Dothistroma septosporum	36.41	2.00e-60	224.00
IUUC-Dme-031710	Drosophila melanogaster	35.98	1.00e-69	255.00
IUUC-Ete-032631	Echinops telfairi	39.75	3.00e-66	243.00
IUUC-Eca-034054	Equus caballus	41.01	5.00e-69	253.00
IUUC-Fca-035724	Felis catus	39.24	5.00e-65	239.00
IUUC-Fal-036987	Ficedula albicollis	42.53	1.00e-78	285.00
IUUC-Fox-037692	Fusarium oxysporum	37.97	9.00e-66	242.00
IUUC-Fso-038442	Fusarium solani	36.36	2.00e-62	231.00
IUUC-Gmo-039273	Gadus morhua	40.91	2.00e-77	281.00
IUUC-Ggr-040009	Gaeumannomyces graminis	35.40	4.00e-49	187.00
IUUC-Gga-041089	Gallus gallus	42.89	1.00e-81	295.00
IUUC-Gac-041978	Gasterosteus aculeatus	38.99	2.00e-74	271.00
IUUC-Gma-043371	Glycine max	50.90	8.00e-98	348.00
IUUC-Hsa-046001	Homo sapiens	42.03	2.00e-73	267.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	42.03	3.00e-80	290.00
IUUC-Kpa-049235	Komagataella pastoris	37.38	6.00e-66	243.00
IUUC-Lch-049926	Latimeria chalumnae	42.78	2.00e-80	290.00
IUUC-Lpe-051352	Leersia perrieri	48.98	7.00e-92	328.00
IUUC-Loc-051987	Lepisosteus oculatus	41.01	4.00e-78	283.00
IUUC-Lma-053171	Leptosphaeria maculans	35.04	2.00e-56	211.00
IUUC-Laf-054372	Loxodonta africana	42.28	1.00e-73	268.00
IUUC-Mcc-055108	Macaca mulatta	42.03	2.00e-73	267.00
IUUC-Mor-056990	Magnaporthe oryzae	34.88	2.00e-63	234.00
IUUC-Mtr-058401	Medicago truncatula	50.39	1.00e-97	348.00
IUUC-Mla-059186	Melampsora laricipopulina	35.32	1.00e-67	248.00
IUUC-Mvi-060262	Microbotryum violaceum	37.40	1.00e-67	248.00
IUUC-Mmr-061688	Microcebus murinus	38.89	7.00e-64	235.00
IUUC-Mdo-062154	Monodelphis domestica	43.04	8.00e-82	295.00
IUUC-Mmu-064232	Mus musculus	42.42	9.00e-74	268.00
IUUC-Mac-065091	Musa acuminata	48.74	5.00e-98	349.00
IUUC-Mpu-066747	Mustela putorius furo	38.23	5.00e-58	216.00
IUUC-Mlu-067799	Myotis lucifugus	38.93	5.00e-65	239.00
IUUC-Nfi-068371	Neosartorya fischeri	44.00	3.00e-14	69.30
IUUC-Ncr-068704	Neurospora crassa	34.83	4.00e-61	226.00
IUUC-Nle-069054	Nomascus leucogenys	42.03	2.00e-73	267.00
IUUC-Ont-071624	Oreochromis niloticus	39.55	5.00e-77	279.00
IUUC-Oan-072898	Ornithorhynchus anatinus	42.28	2.00e-78	284.00
IUUC-Ocu-074289	Oryctolagus cuniculus	40.89	2.00e-57	214.00
IUUC-Oba-075985	Oryza barthii	49.23	2.00e-92	330.00
IUUC-Obr-076887	Oryza brachyantha	49.23	2.00e-95	340.00
IUUC-Ogl-077823	Oryza glaberrima	49.23	2.00e-92	330.00
IUUC-Ogu-078412	Oryza glumaepatula	50.15	5.00e-81	293.00
IUUC-Oin-079569	Oryza indica	45.76	1.00e-60	225.00
IUUC-Olo-080249	Oryza longistaminata	44.63	1.00e-61	228.00
IUUC-Ome-081240	Oryza meridionalis	50.15	9.00e-81	292.00
IUUC-Oni-082152	Oryza nivara	50.15	1.00e-80	291.00
IUUC-Opu-084011	Oryza punctata	49.23	2.00e-92	330.00
IUUC-Oru-084719	Oryza rufipogon	48.31	6.00e-82	295.00
IUUC-Osa-085286	Oryza sativa	49.23	2.00e-92	330.00
IUUC-Ola-086525	Oryzias latipes	38.66	2.00e-63	234.00
IUUC-Olu-087876	Ostreococcus lucimarinus	48.97	9.00e-81	291.00
IUUC-Oga-088125	Otolemur garnettii	41.52	1.00e-72	265.00
IUUC-Oar-089701	Ovis aries	41.52	9.00e-73	265.00
IUUC-Ptr-091218	Pan troglodytes	42.28	1.00e-73	268.00
IUUC-Pan-091755	Papio anubis	42.03	2.00e-73	267.00
IUUC-Psi-094061	Pelodiscus sinensis	42.78	7.00e-80	289.00
IUUC-Pma-094430	Petromyzon marinus	40.26	3.00e-48	183.00
IUUC-Pno-094900	Phaeosphaeria nodorum	31.71	3.00e-21	95.10
IUUC-Ppa-095895	Physcomitrella patens	52.47	3.00e-111	393.00
IUUC-Pfo-096297	Poecilia formosa	41.03	3.00e-48	182.00
IUUC-Pab-097717	Pongo abelii	42.03	2.00e-73	267.00
IUUC-Pop-098938	Populus trichocarpa	47.95	4.00e-97	346.00
IUUC-Pca-100389	Procavia capensis	39.77	3.00e-56	210.00
IUUC-Ppe-102045	Prunus persica	49.22	1.00e-99	355.00
IUUC-Pva-102357	Pteropus vampyrus	45.59	3.00e-34	136.00
IUUC-Pgr-103399	Puccinia graminis	36.86	2.00e-72	264.00
IUUC-Ptt-103872	Puccinia triticina	37.35	7.00e-73	266.00
IUUC-Pte-104092	Pyrenophora teres	38.05	5.00e-52	196.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	38.05	4.00e-52	197.00
IUUC-Rno-105515	Rattus norvegicus	41.92	4.00e-73	266.00
IUUC-Sce-106434	Saccharomyces cerevisiae	36.50	1.00e-68	251.00
IUUC-Sha-106808	Sarcophilus harrisii	42.28	6.00e-80	289.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	37.76	4.00e-60	223.00
IUUC-Spo-108044	Schizosaccharomyces pombe	36.29	2.00e-67	247.00
IUUC-Smo-109581	Selaginella moellendorffii	48.96	5.00e-100	355.00
IUUC-Sit-110704	Setaria italica	49.23	1.00e-95	341.00
IUUC-Sly-110990	Solanum lycopersicum	51.83	2.00e-81	294.00
IUUC-Stu-112542	Solanum tuberosum	48.18	1.00e-54	204.00
IUUC-Sar-113766	Sorex araneus	42.59	2.00e-63	233.00
IUUC-Sbi-114016	Sorghum bicolor	49.23	4.00e-95	339.00
IUUC-Sre-115099	Sporisorium reilianum	34.99	8.00e-66	242.00
IUUC-Ssc-115277	Sus scrofa	42.03	5.00e-71	259.00
IUUC-Tgu-117343	Taeniopygia guttata	42.26	4.00e-78	283.00
IUUC-Tru-118397	Takifugu rubripes	39.59	6.00e-74	269.00
IUUC-Tni-120272	Tetraodon nigroviridis	40.15	3.00e-74	270.00
IUUC-Tca-121514	Theobroma cacao	49.87	3.00e-97	347.00
IUUC-Tre-121990	Trichoderma reesei	36.72	1.00e-58	218.00
IUUC-Tvi-122504	Trichoderma virens	36.84	2.00e-57	214.00
IUUC-Tae-123153	Triticum aestivum	49.35	8.00e-96	342.00
IUUC-Tur-126693	Triticum urartu	48.46	2.00e-68	250.00
IUUC-Tme-127011	Tuber melanosporum	38.00	5.00e-66	243.00
IUUC-Tbe-127939	Tupaia belangeri	42.03	2.00e-73	267.00
IUUC-Ttr-128889	Tursiops truncatus	36.96	1.00e-63	235.00
IUUC-Uma-129450	Ustilago maydis	35.28	5.00e-67	246.00
IUUC-Vda-129919	Verticillium dahliae	36.09	3.00e-52	197.00
IUUC-Vvi-130928	Vitis vinifera	50.77	5.00e-102	362.00
IUUC-Xtr-131891	Xenopus tropicalis	39.65	1.00e-69	254.00
IUUC-Xma-133260	Xiphophorus maculatus	40.85	8.00e-49	184.00
IUUC-Yli-134578	Yarrowia lipolytica	36.59	4.00e-65	240.00
IUUC-Zma-135427	Zea mays	49.23	1.00e-94	337.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence