iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/CUE	4.30e-09	36.6	46	88

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/CUE

   S: 1    dletaleqLkeiFPnldysviqvvLeantgsleaavnnLLegs 43
           d+e++++ + e+F +ld++v++ +L+++++ +e+a+++LLe+s
   Q: 46   DQEELFTSISEMFSALDPDVVYLMLSECDFKVESAMDCLLELS 88
           689**************************************97 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MPRKRKNVGG NPLRKTANSK KSVVSRVASR EEPTTTLPSM CETKIDQEEL FTSISEMFSA 60
LDPDVVYLML SECDFKVESA MDCLLELSAA NAKMEASPSQ TSAARERRLR ASGGTVTGTR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATATGGCTG GTGGATGTCA TTACTGGAAG GTGGAGGGAG CTATGACACA AATTTAATTA 60
AAAGGTAAAC TTTATAGTAT GTTAAGAGAT GTTAAGGACA ATCCGTGATT AGCCTAGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR003892--CUE
IPR013899--DUF1771
IPR027417--P-loop_NTPase
IPR009060--UBA-like

PROSITE

PS51140--CUE

Pfam

PF08590--DUF1771

Gene Ontology

GO:0005829--C:cytosol
GO:0005524--F:ATP binding
GO:0046404--F:ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0004519--F:endonuclease activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001291	Ailuropoda melanoleuca	70.48	0.00e+00	2127.00
IUUC-Atr-002800	Amborella trichopoda	38.24	4.80e-01	29.30
IUUC-Apl-003628	Anas platyrhynchos	41.95	6.00e-150	525.00
IUUC-Aca-005334	Anolis carolinensis	57.05	1.00e-85	312.00
IUUC-Ath-007431	Arabidopsis thaliana	26.25	5.40e-01	29.30
IUUC-Ago-007856	Ashbya gossypii	44.44	8.90e-01	29.60
IUUC-Ame-011671	Astyanax mexicanus	43.46	3.00e-59	224.00
IUUC-Bgr-012243	Blumeria graminis	26.61	1.30e-01	31.60
IUUC-Bta-013181	Bos taurus	70.22	0.00e+00	2015.00
IUUC-Cja-019184	Callithrix jacchus	69.05	0.00e+00	2067.00
IUUC-Cfa-021092	Canis familiaris	69.92	0.00e+00	2016.00
IUUC-Cpo-022517	Cavia porcellus	61.56	0.00e+00	1662.00
IUUC-Csa-024113	Chlorocebus sabaeus	70.59	0.00e+00	2132.00
IUUC-Cho-025097	Choloepus hoffmanni	63.88	0.00e+00	1915.00
IUUC-Dre-028125	Danio rerio	68.09	2.00e-56	214.00
IUUC-Dno-028869	Dasypus novemcinctus	66.11	0.00e+00	1925.00
IUUC-Dor-030516	Dipodomys ordii	65.04	0.00e+00	1715.00
IUUC-Ete-032277	Echinops telfairi	53.28	1.00e-168	588.00
IUUC-Eca-034418	Equus caballus	70.26	0.00e+00	1977.00
IUUC-Fca-035464	Felis catus	68.63	0.00e+00	1954.00
IUUC-Fal-036958	Ficedula albicollis	38.67	5.00e-98	353.00
IUUC-Gga-040829	Gallus gallus	38.49	3.00e-134	473.00
IUUC-Ggo-045014	Gorilla gorilla	68.23	0.00e+00	1758.00
IUUC-Hsa-046049	Homo sapiens	70.59	0.00e+00	2139.00
IUUC-Itr-047979	Ictidomys tridecemlineatus	71.14	0.00e+00	1613.00
IUUC-Lch-050089	Latimeria chalumnae	48.36	3.00e-63	237.00
IUUC-Loc-052313	Lepisosteus oculatus	47.99	1.00e-64	242.00
IUUC-Laf-054208	Loxodonta africana	63.40	0.00e+00	1691.00
IUUC-Mcc-055097	Macaca mulatta	70.21	0.00e+00	2100.00
IUUC-Meu-056220	Macropus eugenii	45.60	2.00e-122	434.00
IUUC-Mga-060071	Meleagris gallopavo	40.34	1.00e-151	531.00
IUUC-Mmu-063261	Mus musculus	86.14	0.00e+00	2486.00
IUUC-Mpu-066564	Mustela putorius furo	71.22	0.00e+00	1597.00
IUUC-Mlu-067134	Myotis lucifugus	69.86	0.00e+00	2054.00
IUUC-Nfi-068329	Neosartorya fischeri	34.88	4.70e-01	28.10
IUUC-Nle-070076	Nomascus leucogenys	69.93	0.00e+00	2093.00
IUUC-Opr-071217	Ochotona princeps	61.40	0.00e+00	1702.00
IUUC-Ont-072331	Oreochromis niloticus	51.75	2.00e-58	221.00
IUUC-Oan-073398	Ornithorhynchus anatinus	43.55	6.00e-162	565.00
IUUC-Ocu-074175	Oryctolagus cuniculus	65.63	0.00e+00	1522.00
IUUC-Olo-080522	Oryza longistaminata	41.03	6.70e-02	29.30
IUUC-Oga-089167	Otolemur garnettii	69.43	0.00e+00	1976.00
IUUC-Oar-090067	Ovis aries	69.77	0.00e+00	2046.00
IUUC-Ptr-091648	Pan troglodytes	70.47	0.00e+00	2137.00
IUUC-Pan-092074	Papio anubis	68.57	0.00e+00	2019.00
IUUC-Psi-094006	Pelodiscus sinensis	48.44	2.00e-137	484.00
IUUC-Pma-094605	Petromyzon marinus	37.94	1.00e-49	192.00
IUUC-Ppa-095472	Physcomitrella patens	38.24	1.60e+00	28.10
IUUC-Pfo-096653	Poecilia formosa	65.25	2.00e-54	208.00
IUUC-Pab-097841	Pongo abelii	70.11	0.00e+00	2134.00
IUUC-Pca-100710	Procavia capensis	56.98	0.00e+00	692.00
IUUC-Pva-102564	Pteropus vampyrus	64.96	0.00e+00	1889.00
IUUC-Ptt-103766	Puccinia triticina	53.33	2.60e+00	26.60
IUUC-Sha-107043	Sarcophilus harrisii	46.93	0.00e+00	1228.00
IUUC-Smo-108891	Selaginella moellendorffii	38.24	5.10e-01	29.30
IUUC-Sar-113440	Sorex araneus	65.99	0.00e+00	1857.00
IUUC-Ssc-115744	Sus scrofa	71.29	0.00e+00	1643.00
IUUC-Tgu-116540	Taeniopygia guttata	54.89	2.00e-91	331.00
IUUC-Tru-118415	Takifugu rubripes	39.55	1.00e-56	216.00
IUUC-Tsy-119380	Tarsius syrichta	58.92	0.00e+00	748.00
IUUC-Tni-120411	Tetraodon nigroviridis	41.08	4.00e-55	211.00
IUUC-Tvi-122309	Trichoderma virens	34.88	1.40e+00	26.60
IUUC-Tbe-127331	Tupaia belangeri	51.69	0.00e+00	831.00
IUUC-Ttr-128559	Tursiops truncatus	69.78	0.00e+00	2039.00
IUUC-Vda-129975	Verticillium dahliae	39.53	2.40e-02	32.30
IUUC-Vpa-130807	Vicugna pacos	67.73	0.00e+00	1638.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence