iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ptr-091166

UUCD1 version

UUC-PaT-00526

Ensembl Protein ID

ENSPTRP00000026721.4

UniProt Accession

H2QNK4; H2QNK4_PANTR

Genbank Protein ID

JAA02507.1; JAA15141.1; JAA32602.1; JAA42490.1; JAA42491.1

Protein Name

Ring finger protein 13

Genbank Nucleotide ID

AACZ03021727; GABF01007004; GABD01000498; GABE01002249; GABE01002248

Gene Name

RNF13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000015521.4	ENSPTRT00000028958.4	ENSPTRP00000026721.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.00e-09	36.8	240	282

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl++++dg  +++lpC H++h +C+  w     +++++ +CP+C+
   Q: 240  CAICLDEYEDGdkLRILPCSHAYHCKCVDPW-----LTKTKKTCPVCK 282
           ********66666******************.....899********7 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MLLSIGMLML SATQVYTILT VQLFAFLNLL PVEADILAYN FENASQTFDD LPARFGYRLP 60
AEGLKGFLIN SKPENACEPI VPPPVKDNSS GTFIVLIRRL DCNFDIKVLN AQRAGYKAAI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGATGAGGTC TCGCCCTCGC CTCTTTAGTA GGTCGGGTGA GTGTAGTGTG CAGGGAAGAG 60
ACGCGTCAGC GCCAGGGCCA GGCCCGCCCG GGGGCAGCCC GGCAGCCGGA TCTTGGGCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR003137--PA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF02225--PA
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0016021--C:integral component of membrane
GO:0031902--C:late endosome membrane
GO:0005765--C:lysosomal membrane
GO:0005654--C:nucleoplasm
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0051865--P:protein autoubiquitination

KEGG

ptr:460776

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000889	Aegilops tauschii	27.68	6.00e-18	85.50
IUUC-Aml-001909	Ailuropoda melanoleuca	97.38	0.00e+00	646.00
IUUC-Atr-003055	Amborella trichopoda	31.45	6.00e-32	131.00
IUUC-Apl-004022	Anas platyrhynchos	91.08	1.00e-173	602.00
IUUC-Aca-004641	Anolis carolinensis	87.24	6.00e-168	583.00
IUUC-Aly-006519	Arabidopsis lyrata	32.68	1.00e-32	132.00
IUUC-Ani-009169	Aspergillus nidulans	37.84	7.00e-13	68.60
IUUC-Ame-010635	Astyanax mexicanus	72.50	7.00e-141	493.00
IUUC-Bgr-012131	Blumeria graminis	50.00	2.00e-12	68.20
IUUC-Bta-012593	Bos taurus	97.90	0.00e+00	692.00
IUUC-Bci-013936	Botrytis cinerea	35.14	5.00e-13	69.30
IUUC-Bdi-014479	Brachypodium distachyon	32.02	8.00e-28	117.00
IUUC-Bol-015396	Brassica oleracea	34.14	9.00e-23	100.00
IUUC-Bra-017689	Brassica rapa	32.74	5.00e-33	135.00
IUUC-Cel-018181	Caenorhabditis elegans	32.16	4.00e-29	122.00
IUUC-Cja-019353	Callithrix jacchus	99.21	0.00e+00	653.00
IUUC-Cfa-020234	Canis familiaris	97.64	0.00e+00	646.00
IUUC-Cpo-021602	Cavia porcellus	95.04	2.00e-158	551.00
IUUC-Cre-022983	Chlamydomonas reinhardtii	37.93	1.00e-10	61.20
IUUC-Csa-023201	Chlorocebus sabaeus	99.74	0.00e+00	656.00
IUUC-Cho-024954	Choloepus hoffmanni	81.36	3.00e-148	517.00
IUUC-Cin-025554	Ciona intestinalis	42.12	3.00e-61	228.00
IUUC-Csv-025959	Ciona savignyi	44.06	9.00e-52	197.00
IUUC-Dre-028744	Danio rerio	77.54	1.00e-136	478.00
IUUC-Dno-029675	Dasypus novemcinctus	96.33	0.00e+00	637.00
IUUC-Dor-030791	Dipodomys ordii	78.22	2.00e-135	474.00
IUUC-Dse-031406	Dothistroma septosporum	43.33	1.00e-12	68.20
IUUC-Dme-031765	Drosophila melanogaster	39.72	9.00e-51	194.00
IUUC-Ete-032577	Echinops telfairi	85.53	6.00e-139	486.00
IUUC-Eca-034148	Equus caballus	96.33	0.00e+00	639.00
IUUC-Eeu-034552	Erinaceus europaeus	94.75	6.00e-178	616.00
IUUC-Fca-036021	Felis catus	97.38	0.00e+00	643.00
IUUC-Fal-037621	Ficedula albicollis	90.03	8.00e-171	592.00
IUUC-Fox-038011	Fusarium oxysporum	35.79	2.00e-13	70.10
IUUC-Gmo-039485	Gadus morhua	77.74	4.00e-134	471.00
IUUC-Gga-041166	Gallus gallus	91.08	2.00e-174	604.00
IUUC-Gac-042124	Gasterosteus aculeatus	75.94	5.00e-129	454.00
IUUC-Ggo-045344	Gorilla gorilla	100.00	0.00e+00	658.00
IUUC-Hsa-045960	Homo sapiens	100.00	0.00e+00	658.00
IUUC-Hvu-047136	Hordeum vulgare	34.52	5.00e-29	122.00
IUUC-Itr-048327	Ictidomys tridecemlineatus	95.54	0.00e+00	635.00
IUUC-Lch-050635	Latimeria chalumnae	82.50	2.00e-135	474.00
IUUC-Lpe-051192	Leersia perrieri	34.78	2.00e-29	123.00
IUUC-Loc-052869	Lepisosteus oculatus	79.20	9.00e-141	493.00
IUUC-Laf-054477	Loxodonta africana	95.01	0.00e+00	636.00
IUUC-Mcc-055232	Macaca mulatta	99.74	0.00e+00	656.00
IUUC-Meu-056237	Macropus eugenii	82.35	1.00e-116	412.00
IUUC-Mpo-057522	Magnaporthe poae	44.44	3.00e-13	69.70
IUUC-Mtr-058129	Medicago truncatula	32.68	3.00e-28	119.00
IUUC-Mla-059171	Melampsora laricipopulina	42.59	2.00e-10	60.80
IUUC-Mga-059780	Meleagris gallopavo	91.08	3.00e-174	603.00
IUUC-Mvi-060468	Microbotryum violaceum	46.00	4.00e-12	66.60
IUUC-Mmr-061384	Microcebus murinus	96.76	2.00e-179	621.00
IUUC-Mdo-062781	Monodelphis domestica	92.67	4.00e-180	623.00
IUUC-Mmu-063727	Mus musculus	93.44	1.00e-172	598.00
IUUC-Mac-065216	Musa acuminata	34.38	6.00e-30	125.00
IUUC-Mpu-066497	Mustela putorius furo	97.90	0.00e+00	646.00
IUUC-Mlu-067654	Myotis lucifugus	95.71	3.00e-115	407.00
IUUC-Nle-069368	Nomascus leucogenys	100.00	0.00e+00	658.00
IUUC-Opr-070934	Ochotona princeps	67.98	4.00e-111	394.00
IUUC-Ont-071868	Oreochromis niloticus	75.55	1.00e-128	452.00
IUUC-Oan-072733	Ornithorhynchus anatinus	87.19	5.00e-105	373.00
IUUC-Ocu-074083	Oryctolagus cuniculus	96.59	0.00e+00	640.00
IUUC-Oba-075841	Oryza barthii	33.33	2.00e-27	117.00
IUUC-Obr-076703	Oryza brachyantha	35.57	4.00e-30	125.00
IUUC-Ogl-077861	Oryza glaberrima	35.57	3.00e-30	126.00
IUUC-Ogu-078205	Oryza glumaepatula	34.78	3.00e-28	119.00
IUUC-Oin-080138	Oryza indica	32.56	4.00e-28	119.00
IUUC-Olo-081024	Oryza longistaminata	35.18	2.00e-29	124.00
IUUC-Ome-081844	Oryza meridionalis	35.57	4.00e-30	125.00
IUUC-Oni-082382	Oryza nivara	32.81	6.00e-30	125.00
IUUC-Opu-083162	Oryza punctata	36.36	2.00e-30	126.00
IUUC-Oru-085122	Oryza rufipogon	33.12	3.00e-28	119.00
IUUC-Osa-086175	Oryza sativa	35.57	2.00e-30	126.00
IUUC-Ola-086440	Oryzias latipes	74.01	4.00e-116	410.00
IUUC-Oga-088291	Otolemur garnettii	91.91	3.00e-168	583.00
IUUC-Oar-089911	Ovis aries	97.64	0.00e+00	690.00
IUUC-Pan-092154	Papio anubis	99.74	0.00e+00	656.00
IUUC-Psi-093062	Pelodiscus sinensis	91.34	3.00e-170	590.00
IUUC-Pma-094545	Petromyzon marinus	73.21	7.00e-26	107.00
IUUC-Ppa-095928	Physcomitrella patens	34.47	4.00e-31	128.00
IUUC-Pfo-097232	Poecilia formosa	77.43	2.00e-132	465.00
IUUC-Pab-097909	Pongo abelii	99.74	0.00e+00	659.00
IUUC-Pop-099688	Populus trichocarpa	31.70	2.00e-22	99.80
IUUC-Pca-100724	Procavia capensis	79.13	3.00e-138	484.00
IUUC-Ppe-101605	Prunus persica	31.41	4.00e-28	118.00
IUUC-Pva-102624	Pteropus vampyrus	91.08	1.00e-165	575.00
IUUC-Pgr-103420	Puccinia graminis	55.32	2.00e-12	67.80
IUUC-Ptt-103943	Puccinia triticina	44.44	7.00e-11	62.00
IUUC-Rno-105109	Rattus norvegicus	91.60	6.00e-165	573.00
IUUC-Sha-107563	Sarcophilus harrisii	92.41	2.00e-175	607.00
IUUC-Spo-108083	Schizosaccharomyces pombe	26.61	9.00e-15	74.30
IUUC-Ssl-108601	Sclerotinia sclerotiorum	41.07	7.00e-13	68.20
IUUC-Smo-109274	Selaginella moellendorffii	36.08	3.00e-32	132.00
IUUC-Sit-110628	Setaria italica	33.55	1.00e-31	130.00
IUUC-Sly-110842	Solanum lycopersicum	29.39	3.00e-28	119.00
IUUC-Sre-114989	Sporisorium reilianum	43.14	1.00e-12	68.90
IUUC-Ssc-116043	Sus scrofa	97.64	0.00e+00	643.00
IUUC-Tgu-116908	Taeniopygia guttata	89.79	2.00e-171	594.00
IUUC-Tru-118219	Takifugu rubripes	75.47	1.00e-131	462.00
IUUC-Tsy-119333	Tarsius syrichta	97.90	0.00e+00	639.00
IUUC-Tni-120332	Tetraodon nigroviridis	71.49	8.00e-89	319.00
IUUC-Tca-121333	Theobroma cacao	33.08	1.00e-27	117.00
IUUC-Tae-125320	Triticum aestivum	31.16	1.00e-29	123.00
IUUC-Tur-126455	Triticum urartu	32.61	1.00e-26	114.00
IUUC-Tbe-127859	Tupaia belangeri	85.79	6.00e-167	579.00
IUUC-Ttr-129219	Tursiops truncatus	87.14	2.00e-157	548.00
IUUC-Uma-129559	Ustilago maydis	52.08	2.00e-12	67.80
IUUC-Vda-129899	Verticillium dahliae	43.40	7.00e-13	68.60
IUUC-Vpa-130314	Vicugna pacos	95.01	8.00e-176	609.00
IUUC-Vvi-131355	Vitis vinifera	33.46	4.00e-29	122.00
IUUC-Xtr-132114	Xenopus tropicalis	75.56	2.00e-131	461.00
IUUC-Xma-133474	Xiphophorus maculatus	77.43	1.00e-132	465.00
IUUC-Yli-134442	Yarrowia lipolytica	44.68	3.00e-12	65.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence