iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Xtr-132265

Ensembl Protein ID

ENSXETP00000042195.3

UniProt Accession

F6XU84; F6XU84_XENTR

Genbank Protein ID

ENSXETP00000042195

Protein Name

Trinucleotide repeat-containing 6C

Genbank Nucleotide ID

AAMC01051780

Gene Name

tnrc6c

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000019470.3	ENSXETT00000042195.3	ENSXETP00000042195.3

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBA	41.53	2.00e-33	142.00	IUUC-Dme-032014

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MATSAQGNFT GHTKKTNGNN GANGALIQST SNQSALGAGG ANGNGNLARV WGVAPGSSSG 60
IAHCPIGGGD GKVDNMIGES RSHNCWGASN PNTGINLNLN PNANPAAWPV LGHEGTLGGG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTACTA GTGCCCAAGG CAACTTCACT GGACATACAA AGAAAACAAA TGGCAATAAT 60
GGCGCCAATG GAGCACTCAT CCAAAGCACT TCTAACCAGA GTGCCCTTGG AGCTGGTGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR019486--Argonaute_hook_dom
IPR026805--GW182_M_dom
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR032226--TNRC6_PABC-bd
IPR033499--TNRC6C
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF10427--Ago_hook
PF12938--M_domain
PF00076--RRM_1
PF16608--TNRC6-PABC_bdg
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding
GO:0035278--P:miRNA mediated inhibition of translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001985	Ailuropoda melanoleuca	41.44	1.00e-176	614.00
IUUC-Apl-003191	Anas platyrhynchos	71.19	0.00e+00	1792.00
IUUC-Aca-004717	Anolis carolinensis	73.39	0.00e+00	1853.00
IUUC-Ame-010681	Astyanax mexicanus	50.83	0.00e+00	815.00
IUUC-Bta-012915	Bos taurus	46.90	6.00e-85	310.00
IUUC-Cja-019614	Callithrix jacchus	73.08	0.00e+00	1706.00
IUUC-Cfa-020452	Canis familiaris	45.92	5.00e-88	320.00
IUUC-Cpo-021452	Cavia porcellus	73.59	0.00e+00	1808.00
IUUC-Csa-023169	Chlorocebus sabaeus	40.20	2.00e-176	613.00
IUUC-Cho-024655	Choloepus hoffmanni	38.59	2.00e-96	348.00
IUUC-Dre-028059	Danio rerio	58.49	0.00e+00	1053.00
IUUC-Dno-029734	Dasypus novemcinctus	39.68	0.00e+00	633.00
IUUC-Dor-030671	Dipodomys ordii	42.16	7.00e-171	595.00
IUUC-Dme-032014	Drosophila melanogaster	34.08	1.00e-30	129.00
IUUC-Ete-032774	Echinops telfairi	71.17	0.00e+00	1255.00
IUUC-Eca-033866	Equus caballus	72.14	0.00e+00	1688.00
IUUC-Eeu-034572	Erinaceus europaeus	52.17	1.00e-39	159.00
IUUC-Fal-036856	Ficedula albicollis	72.77	0.00e+00	1683.00
IUUC-Gga-040531	Gallus gallus	74.97	0.00e+00	1804.00
IUUC-Gac-041681	Gasterosteus aculeatus	52.50	0.00e+00	863.00
IUUC-Ggo-045143	Gorilla gorilla	72.86	0.00e+00	1736.00
IUUC-Hsa-045913	Homo sapiens	73.93	0.00e+00	1737.00
IUUC-Lch-049619	Latimeria chalumnae	36.80	2.00e-109	391.00
IUUC-Loc-052289	Lepisosteus oculatus	68.77	0.00e+00	1027.00
IUUC-Laf-053607	Loxodonta africana	73.19	0.00e+00	1760.00
IUUC-Mcc-055342	Macaca mulatta	73.75	0.00e+00	1675.00
IUUC-Meu-056275	Macropus eugenii	47.49	2.00e-94	341.00
IUUC-Mga-059241	Meleagris gallopavo	37.74	1.00e-104	375.00
IUUC-Mmr-061348	Microcebus murinus	45.92	2.00e-87	318.00
IUUC-Mdo-062155	Monodelphis domestica	73.77	0.00e+00	1826.00
IUUC-Mmu-064259	Mus musculus	45.98	1.00e-92	335.00
IUUC-Mpu-066534	Mustela putorius furo	49.50	1.00e-79	292.00
IUUC-Mlu-067834	Myotis lucifugus	39.71	0.00e+00	662.00
IUUC-Nle-069168	Nomascus leucogenys	39.61	1.00e-170	594.00
IUUC-Opr-070976	Ochotona princeps	35.70	9.00e-75	276.00
IUUC-Ocu-074534	Oryctolagus cuniculus	77.06	1.00e-174	607.00
IUUC-Oga-088116	Otolemur garnettii	40.06	0.00e+00	628.00
IUUC-Oar-090041	Ovis aries	46.90	5.00e-85	310.00
IUUC-Ptr-091135	Pan troglodytes	71.76	0.00e+00	1669.00
IUUC-Pan-092665	Papio anubis	71.88	0.00e+00	1650.00
IUUC-Psi-093057	Pelodiscus sinensis	73.51	0.00e+00	1774.00
IUUC-Pma-094508	Petromyzon marinus	46.56	2.00e-53	203.00
IUUC-Pfo-097115	Poecilia formosa	54.26	3.00e-180	625.00
IUUC-Pab-097935	Pongo abelii	39.29	4.00e-178	619.00
IUUC-Pca-100481	Procavia capensis	82.55	1.00e-174	607.00
IUUC-Pva-102376	Pteropus vampyrus	38.17	2.00e-73	271.00
IUUC-Rno-105508	Rattus norvegicus	45.74	1.00e-88	322.00
IUUC-Sar-113036	Sorex araneus	58.08	2.00e-40	161.00
IUUC-Ssc-115574	Sus scrofa	60.23	0.00e+00	1182.00
IUUC-Tgu-117233	Taeniopygia guttata	75.85	0.00e+00	1749.00
IUUC-Tru-117725	Takifugu rubripes	54.09	0.00e+00	958.00
IUUC-Tsy-118786	Tarsius syrichta	36.85	2.00e-68	255.00
IUUC-Tbe-127989	Tupaia belangeri	66.28	0.00e+00	653.00
IUUC-Ttr-128518	Tursiops truncatus	73.60	0.00e+00	1816.00
IUUC-Vpa-130230	Vicugna pacos	43.01	4.00e-66	247.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence