iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026538

Ensembl Protein ID

ELA34671

UniProt Accession

L2G8P9; L2G8P9_COLGN

Genbank Protein ID

ELA34671.1

Protein Name

U4 u6 small nuclear ribonucleoprotein prp4

Genbank Nucleotide ID

KB020600

Gene Name

CGGC5_5516

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_5516	ELA34671	ELA34671

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-31	105.0	858	888
UBD/Beta-Prp	4.20e-51	173.5	636	808

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+++v++++   d + +vsG++D t+k+W 
   Q: 858  GHAGPVSSVDVsRDgKWIVSGGHDRTVKLWG 888
           8***********888***************6 PP

UBD/Beta-Prp

   S: 61   spdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtv 161
           sp++  l++g+  +++++w l++ ++++tl+gh+++v  ++f+psg +++s+s+d t r+wd+et  +l  +++gh++ v  v+++ dg+ll+s++lD++ 
   Q: 636  SPSTVNLASGGAEGVVHLWGLEQDTPLSTLSGHSARVSRVEFHPSGRYVASASDDTTWRLWDVETTAELL-LQEGHSRGVYAVSFNADGSLLASAGLDSIG 735
           55666799**************************************************************.****************************** PP
   S: 162  rlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnde 235
           r+Wdl++g+ +  l + h +++y l++ s+g +++sgs dg vk wd+++ +    l +ht+ v+++r ++ ++
   Q: 736  RIWDLRSGRTVMILDE-HIQPIYALDWGSDGHRVLSGSADGWVKCWDVRKVQRTANLGAHTKAVSDLRWFKGTD 808
           **************99.**********************************99************999886554 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MPSDEENPVL WGSPAQTGAA FDFRSDVVTT PSQGMLLAIA RTTLHDDVYG EDSTTKNFEE 60
EMAKTCGHES AAFVLSGTMA NQLAIRSLLH QPPHAVLADA SAHIIHWEAG GVAHLSGAMV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGAGCG ACGAGGAAAA CCCAGTGCTT TGGGGCTCGC CCGCGCAAAC AGGCGCGGCC 60
TTCGATTTCC GAAGTAAGTC CCAGCCGGAG TCCAACCGAG GAGGGGGCAT TTGACCCGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR001597--ArAA_b-elim_lyase/Thr_aldolase
IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015424--PyrdxlP-dep_Trfase
IPR015421--PyrdxlP-dep_Trfase_major_sub1
IPR015422--PyrdxlP-dep_Trfase_sub2
IPR027295--Quinoprotein_ADH-like_fam
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF01212--Beta_elim_lyase
PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid
GO:0016829--F:lyase activity
GO:0006520--P:cellular amino acid metabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	37.22	4.00e-78	283.00
IUUC-Aml-001737	Ailuropoda melanoleuca	37.72	5.00e-93	333.00
IUUC-Atr-002828	Amborella trichopoda	35.23	2.00e-80	291.00
IUUC-Apl-003723	Anas platyrhynchos	37.93	8.00e-94	335.00
IUUC-Aca-004972	Anolis carolinensis	37.50	1.00e-92	332.00
IUUC-Aly-006531	Arabidopsis lyrata	34.68	3.00e-65	240.00
IUUC-Ath-007367	Arabidopsis thaliana	34.86	9.00e-78	282.00
IUUC-Ago-007893	Ashbya gossypii	37.70	4.00e-73	266.00
IUUC-Acl-008236	Aspergillus clavatus	61.01	2.00e-173	600.00
IUUC-Afl-008522	Aspergillus flavus	63.46	3.00e-178	616.00
IUUC-Afu-008904	Aspergillus fumigatus	61.80	2.00e-176	610.00
IUUC-Ani-009198	Aspergillus nidulans	62.81	0.00e+00	636.00
IUUC-Ang-009662	Aspergillus niger	60.27	2.00e-177	613.00
IUUC-Aor-009881	Aspergillus oryzae	62.24	5.00e-178	615.00
IUUC-Ate-010333	Aspergillus terreus	61.81	2.00e-167	580.00
IUUC-Ame-011697	Astyanax mexicanus	39.44	5.00e-97	346.00
IUUC-Bgr-012254	Blumeria graminis	64.99	0.00e+00	679.00
IUUC-Bta-012615	Bos taurus	37.72	2.00e-93	334.00
IUUC-Bci-013720	Botrytis cinerea	67.95	0.00e+00	710.00
IUUC-Bdi-014302	Brachypodium distachyon	36.23	4.00e-81	293.00
IUUC-Bol-015594	Brassica oleracea	34.22	8.00e-68	249.00
IUUC-Bra-016645	Brassica rapa	36.13	2.00e-66	244.00
IUUC-Cel-018632	Caenorhabditis elegans	33.26	2.00e-70	258.00
IUUC-Cja-019747	Callithrix jacchus	37.72	2.00e-93	334.00
IUUC-Cfa-020288	Canis familiaris	37.72	3.00e-93	333.00
IUUC-Cpo-021440	Cavia porcellus	37.72	5.00e-93	333.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	35.17	1.00e-57	214.00
IUUC-Csa-023139	Chlorocebus sabaeus	35.59	1.00e-69	254.00
IUUC-Cho-024481	Choloepus hoffmanni	36.42	2.00e-86	310.00
IUUC-Cin-025106	Ciona intestinalis	36.91	2.00e-87	314.00
IUUC-Csv-026087	Ciona savignyi	36.48	9.00e-86	308.00
IUUC-Cne-026793	Cryptococcus neoformans	41.37	9.00e-108	382.00
IUUC-Dre-028723	Danio rerio	39.22	8.00e-95	338.00
IUUC-Dno-029299	Dasypus novemcinctus	37.28	1.00e-92	332.00
IUUC-Dse-031562	Dothistroma septosporum	57.06	1.00e-166	578.00
IUUC-Dme-031783	Drosophila melanogaster	34.77	7.00e-76	276.00
IUUC-Ete-032669	Echinops telfairi	37.72	5.00e-93	333.00
IUUC-Eca-033566	Equus caballus	37.72	5.00e-93	333.00
IUUC-Eeu-034524	Erinaceus europaeus	40.43	1.00e-55	208.00
IUUC-Fca-036215	Felis catus	37.72	3.00e-93	333.00
IUUC-Fal-037018	Ficedula albicollis	39.21	4.00e-81	293.00
IUUC-Fox-037936	Fusarium oxysporum	75.82	0.00e+00	786.00
IUUC-Fso-038366	Fusarium solani	75.96	0.00e+00	816.00
IUUC-Gmo-038966	Gadus morhua	33.77	1.00e-58	218.00
IUUC-Ggr-039942	Gaeumannomyces graminis	68.63	0.00e+00	721.00
IUUC-Gga-040797	Gallus gallus	37.93	5.00e-94	336.00
IUUC-Gac-042598	Gasterosteus aculeatus	36.44	8.00e-79	285.00
IUUC-Gma-044220	Glycine max	35.38	3.00e-76	277.00
IUUC-Ggo-044682	Gorilla gorilla	37.93	5.00e-94	336.00
IUUC-Hsa-045804	Homo sapiens	37.93	2.00e-94	338.00
IUUC-Hvu-047567	Hordeum vulgare	35.84	7.00e-73	266.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	37.50	6.00e-93	332.00
IUUC-Kpa-049369	Komagataella pastoris	35.26	9.00e-67	245.00
IUUC-Lch-050074	Latimeria chalumnae	35.19	6.00e-81	293.00
IUUC-Lpe-051333	Leersia perrieri	36.50	6.00e-76	276.00
IUUC-Loc-052164	Lepisosteus oculatus	37.72	6.00e-95	339.00
IUUC-Lma-053088	Leptosphaeria maculans	58.24	2.00e-167	580.00
IUUC-Laf-053460	Loxodonta africana	37.72	2.00e-93	334.00
IUUC-Mcc-055859	Macaca mulatta	37.72	3.00e-93	333.00
IUUC-Meu-056134	Macropus eugenii	37.93	3.00e-94	337.00
IUUC-Mor-057251	Magnaporthe oryzae	66.42	0.00e+00	684.00
IUUC-Mpo-057375	Magnaporthe poae	75.19	1.00e-117	414.00
IUUC-Mtr-058546	Medicago truncatula	34.21	8.00e-71	259.00
IUUC-Mla-059145	Melampsora laricipopulina	42.27	5.00e-103	365.00
IUUC-Mga-059855	Meleagris gallopavo	37.93	5.00e-94	336.00
IUUC-Mvi-060372	Microbotryum violaceum	40.15	4.00e-84	303.00
IUUC-Mmr-060826	Microcebus murinus	38.15	1.00e-93	335.00
IUUC-Mdo-062748	Monodelphis domestica	37.72	3.00e-94	337.00
IUUC-Mmu-063351	Mus musculus	37.72	5.00e-93	333.00
IUUC-Mac-064846	Musa acuminata	34.48	5.00e-70	256.00
IUUC-Mpu-066006	Mustela putorius furo	37.72	3.00e-93	333.00
IUUC-Mlu-067398	Myotis lucifugus	37.72	5.00e-93	333.00
IUUC-Nfi-068399	Neosartorya fischeri	61.80	0.00e+00	641.00
IUUC-Ncr-068711	Neurospora crassa	70.94	0.00e+00	764.00
IUUC-Nle-069982	Nomascus leucogenys	37.72	2.00e-93	334.00
IUUC-Opr-070596	Ochotona princeps	37.93	7.00e-94	335.00
IUUC-Ont-072374	Oreochromis niloticus	38.58	4.00e-85	306.00
IUUC-Oan-073166	Ornithorhynchus anatinus	34.83	8.00e-74	268.00
IUUC-Ocu-074371	Oryctolagus cuniculus	37.93	9.00e-94	335.00
IUUC-Oba-075083	Oryza barthii	35.12	2.00e-77	281.00
IUUC-Obr-076405	Oryza brachyantha	36.73	4.00e-76	276.00
IUUC-Ogl-077683	Oryza glaberrima	35.74	7.00e-78	282.00
IUUC-Ogu-078486	Oryza glumaepatula	35.67	2.00e-77	281.00
IUUC-Oin-079679	Oryza indica	35.74	2.00e-80	291.00
IUUC-Olo-080243	Oryza longistaminata	34.20	2.00e-63	234.00
IUUC-Ome-081230	Oryza meridionalis	35.67	2.00e-80	291.00
IUUC-Oni-082961	Oryza nivara	35.67	2.00e-80	291.00
IUUC-Opu-083189	Oryza punctata	35.46	5.00e-78	283.00
IUUC-Oru-084353	Oryza rufipogon	36.64	7.00e-79	285.00
IUUC-Osa-085458	Oryza sativa	35.67	2.00e-80	291.00
IUUC-Ola-086940	Oryzias latipes	39.02	9.00e-90	322.00
IUUC-Olu-087580	Ostreococcus lucimarinus	33.73	3.00e-52	197.00
IUUC-Oga-088703	Otolemur garnettii	35.99	4.00e-84	303.00
IUUC-Oar-089829	Ovis aries	37.72	3.00e-93	333.00
IUUC-Ptr-090838	Pan troglodytes	37.93	2.00e-94	338.00
IUUC-Pan-092261	Papio anubis	37.63	1.00e-91	328.00
IUUC-Psi-093020	Pelodiscus sinensis	37.28	7.00e-94	336.00
IUUC-Pno-094858	Phaeosphaeria nodorum	55.71	4.00e-154	536.00
IUUC-Ppa-095531	Physcomitrella patens	34.89	4.00e-83	300.00
IUUC-Pfo-096812	Poecilia formosa	34.96	7.00e-69	253.00
IUUC-Pab-097805	Pongo abelii	32.89	3.00e-69	253.00
IUUC-Pop-100051	Populus trichocarpa	33.81	1.00e-74	272.00
IUUC-Pca-100152	Procavia capensis	37.72	3.00e-93	333.00
IUUC-Ppe-101244	Prunus persica	35.77	6.00e-76	276.00
IUUC-Pva-102529	Pteropus vampyrus	36.42	2.00e-86	311.00
IUUC-Pgr-103550	Puccinia graminis	42.32	4.00e-110	389.00
IUUC-Ptt-103951	Puccinia triticina	39.53	2.00e-93	334.00
IUUC-Pte-104151	Pyrenophora teres	58.57	8.00e-162	561.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	58.38	2.00e-163	566.00
IUUC-Rno-105747	Rattus norvegicus	37.72	9.00e-93	332.00
IUUC-Sce-106418	Saccharomyces cerevisiae	33.00	2.00e-72	264.00
IUUC-Sha-107334	Sarcophilus harrisii	37.93	2.00e-94	337.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	36.65	5.00e-77	280.00
IUUC-Spo-108189	Schizosaccharomyces pombe	39.84	2.00e-90	324.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	67.76	0.00e+00	720.00
IUUC-Smo-109578	Selaginella moellendorffii	33.92	3.00e-82	297.00
IUUC-Sit-110102	Setaria italica	35.19	4.00e-79	286.00
IUUC-Sly-111668	Solanum lycopersicum	35.17	5.00e-73	266.00
IUUC-Stu-111928	Solanum tuberosum	35.17	3.00e-73	267.00
IUUC-Sar-113266	Sorex araneus	31.68	4.00e-71	260.00
IUUC-Sbi-114134	Sorghum bicolor	35.39	6.00e-79	286.00
IUUC-Sre-115114	Sporisorium reilianum	44.62	6.00e-109	385.00
IUUC-Ssc-115443	Sus scrofa	37.72	2.00e-93	334.00
IUUC-Tgu-117157	Taeniopygia guttata	37.50	3.00e-93	333.00
IUUC-Tru-118587	Takifugu rubripes	37.67	6.00e-87	313.00
IUUC-Tsy-119157	Tarsius syrichta	36.41	4.00e-75	273.00
IUUC-Tni-120427	Tetraodon nigroviridis	38.80	6.00e-91	326.00
IUUC-Tca-121368	Theobroma cacao	33.20	8.00e-77	279.00
IUUC-Tre-122074	Trichoderma reesei	73.46	0.00e+00	787.00
IUUC-Tvi-122349	Trichoderma virens	73.13	0.00e+00	782.00
IUUC-Tae-125651	Triticum aestivum	36.64	4.00e-79	286.00
IUUC-Tur-126532	Triticum urartu	39.73	3.00e-69	254.00
IUUC-Tme-126951	Tuber melanosporum	54.88	2.00e-155	540.00
IUUC-Tbe-128136	Tupaia belangeri	35.34	2.00e-81	294.00
IUUC-Ttr-129169	Tursiops truncatus	39.86	1.00e-56	212.00
IUUC-Uma-129399	Ustilago maydis	41.95	3.00e-105	373.00
IUUC-Vda-129842	Verticillium dahliae	82.95	0.00e+00	853.00
IUUC-Vpa-130440	Vicugna pacos	37.72	2.00e-93	334.00
IUUC-Vvi-131075	Vitis vinifera	35.86	2.00e-75	275.00
IUUC-Xma-133002	Xiphophorus maculatus	38.06	6.00e-69	252.00
IUUC-Yli-134569	Yarrowia lipolytica	37.45	3.00e-79	286.00
IUUC-Zma-135799	Zea mays	33.66	1.00e-73	269.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence