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Tag Content
iUUCD ID IUUC-Dre-028705
Ensembl Protein ID ENSDARP00000013006.7
UniProt Accession F1RCY6; F1RCY6_DANRE
Genbank Protein ID ENSDARP00000013006
Protein Name Upf1 regulator of nonsense transcripts homolog (yeast)
Genbank Nucleotide ID CR931779
Gene Name upf1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSDARG00000016302.10 ENSDART00000162582.1 ENSDARP00000140654.1
ENSDARG00000016302.10 ENSDART00000021011.8 ENSDARP00000013006.7
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/Other 57.70 0.00e+00 970.00 IUUC-Sce-106206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Danio rerio
Protein Sequence
(Fasta)
MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTQGQT QSQLDNQVNG 60
PDGVLPNGED AVGKTSQLLA ELNFEEDEED TYYTKDLPVH ACSYCGIHDP ACVVYCNTSK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Dre-028705|E3,E3 activity/Other|Danio rerio
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCTTCTCCGG AATCGTTTGC TTTCATTTCT GAATCTGCAC GAGCCCGCCG CGCGCCGTTT 60
CCTTCTCTTC ACGTACAACC AAAACAAACA AAACAAACGC GCATCGCTCG GCTCCTTTCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Dre-028705|E3,E3 activity/Other|Danio rerio
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0043009--P:chordate embryonic development
GO:0000956--P:nuclear-transcribed mRNA catabolic process
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 71.50 0.00e+00 1172.00
IUUC-Aml-002008 Ailuropoda melanoleuca 92.37 0.00e+00 2025.00
IUUC-Atr-002632 Amborella trichopoda 60.40 0.00e+00 1269.00
IUUC-Apl-003997 Anas platyrhynchos 94.60 0.00e+00 1954.00
IUUC-Aca-004322 Anolis carolinensis 31.55 1.00e-53 205.00
IUUC-Aly-006521 Arabidopsis lyrata 71.84 0.00e+00 1248.00
IUUC-Ath-007059 Arabidopsis thaliana 71.60 0.00e+00 1247.00
IUUC-Ago-007801 Ashbya gossypii 56.04 0.00e+00 957.00
IUUC-Acl-008312 Aspergillus clavatus 69.18 0.00e+00 1199.00
IUUC-Afl-008429 Aspergillus flavus 68.30 0.00e+00 1198.00
IUUC-Afu-009092 Aspergillus fumigatus 68.49 0.00e+00 1198.00
IUUC-Ani-009317 Aspergillus nidulans 69.18 0.00e+00 1201.00
IUUC-Ang-009783 Aspergillus niger 68.05 0.00e+00 1193.00
IUUC-Aor-010178 Aspergillus oryzae 68.30 0.00e+00 1198.00
IUUC-Ate-010294 Aspergillus terreus 68.17 0.00e+00 1196.00
IUUC-Ame-010774 Astyanax mexicanus 79.28 0.00e+00 1264.00
IUUC-Bgr-012293 Blumeria graminis 67.41 0.00e+00 1189.00
IUUC-Bta-012382 Bos taurus 92.38 0.00e+00 2028.00
IUUC-Bci-013937 Botrytis cinerea 67.78 0.00e+00 1186.00
IUUC-Bdi-014612 Brachypodium distachyon 73.00 0.00e+00 1258.00
IUUC-Bol-015145 Brassica oleracea 70.90 0.00e+00 1239.00
IUUC-Bra-017370 Brassica rapa 69.46 0.00e+00 1204.00
IUUC-Cel-018240 Caenorhabditis elegans 54.97 0.00e+00 999.00
IUUC-Cja-019892 Callithrix jacchus 94.66 0.00e+00 1955.00
IUUC-Cfa-020700 Canis familiaris 92.14 0.00e+00 2027.00
IUUC-Cpo-021510 Cavia porcellus 91.69 0.00e+00 2028.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 59.28 0.00e+00 986.00
IUUC-Csa-023665 Chlorocebus sabaeus 92.69 0.00e+00 2023.00
IUUC-Cin-025798 Ciona intestinalis 79.84 0.00e+00 1377.00
IUUC-Csv-025901 Ciona savignyi 72.46 0.00e+00 1592.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 65.37 0.00e+00 1164.00
IUUC-Cne-027014 Cryptococcus neoformans 63.51 0.00e+00 1206.00
IUUC-Dor-030369 Dipodomys ordii 91.85 0.00e+00 1877.00
IUUC-Dme-031767 Drosophila melanogaster 72.57 0.00e+00 1396.00
IUUC-Ete-032800 Echinops telfairi 33.88 5.00e-53 202.00
IUUC-Eca-033840 Equus caballus 94.83 0.00e+00 1954.00
IUUC-Fca-035466 Felis catus 93.86 0.00e+00 1951.00
IUUC-Fal-037548 Ficedula albicollis 94.95 0.00e+00 1936.00
IUUC-Fox-038023 Fusarium oxysporum 64.07 0.00e+00 1150.00
IUUC-Gmo-039285 Gadus morhua 92.55 0.00e+00 1999.00
IUUC-Ggr-039810 Gaeumannomyces graminis 66.63 0.00e+00 1183.00
IUUC-Gga-040972 Gallus gallus 93.21 0.00e+00 2027.00
IUUC-Gac-042075 Gasterosteus aculeatus 93.00 0.00e+00 2022.00
IUUC-Gma-042713 Glycine max 72.44 0.00e+00 1291.00
IUUC-Ggo-045398 Gorilla gorilla 94.82 0.00e+00 1954.00
IUUC-Hsa-046152 Homo sapiens 92.69 0.00e+00 2023.00
IUUC-Hvu-047555 Hordeum vulgare 73.08 0.00e+00 731.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 94.64 0.00e+00 1913.00
IUUC-Kpa-049205 Komagataella pastoris 49.70 0.00e+00 782.00
IUUC-Lch-049587 Latimeria chalumnae 95.56 0.00e+00 1281.00
IUUC-Lpe-051059 Leersia perrieri 73.19 0.00e+00 1265.00
IUUC-Loc-051911 Lepisosteus oculatus 95.92 0.00e+00 2042.00
IUUC-Lma-053007 Leptosphaeria maculans 63.04 0.00e+00 1166.00
IUUC-Laf-054234 Loxodonta africana 91.86 0.00e+00 2013.00
IUUC-Mcc-054762 Macaca mulatta 92.37 0.00e+00 2023.00
IUUC-Meu-056677 Macropus eugenii 89.06 0.00e+00 842.00
IUUC-Mor-057147 Magnaporthe oryzae 67.16 0.00e+00 1174.00
IUUC-Mpo-057314 Magnaporthe poae 66.63 0.00e+00 1183.00
IUUC-Mtr-058329 Medicago truncatula 72.44 0.00e+00 1290.00
IUUC-Mla-059094 Melampsora laricipopulina 64.37 0.00e+00 684.00
IUUC-Mga-060126 Meleagris gallopavo 94.12 0.00e+00 1931.00
IUUC-Mvi-060373 Microbotryum violaceum 67.61 0.00e+00 1278.00
IUUC-Mmr-060628 Microcebus murinus 92.28 0.00e+00 2020.00
IUUC-Mdo-061858 Monodelphis domestica 95.41 0.00e+00 1964.00
IUUC-Mmu-064116 Mus musculus 92.48 0.00e+00 2017.00
IUUC-Mac-065136 Musa acuminata 69.68 0.00e+00 1256.00
IUUC-Mpu-066463 Mustela putorius furo 92.87 0.00e+00 2030.00
IUUC-Mlu-068098 Myotis lucifugus 92.75 0.00e+00 2019.00
IUUC-Nfi-068370 Neosartorya fischeri 68.49 0.00e+00 1198.00
IUUC-Ncr-068792 Neurospora crassa 65.36 0.00e+00 1172.00
IUUC-Nle-070102 Nomascus leucogenys 94.73 0.00e+00 1946.00
IUUC-Opr-070620 Ochotona princeps 87.92 0.00e+00 1778.00
IUUC-Ont-072685 Oreochromis niloticus 94.19 0.00e+00 2003.00
IUUC-Oan-073665 Ornithorhynchus anatinus 92.04 0.00e+00 2018.00
IUUC-Ocu-074154 Oryctolagus cuniculus 33.49 5.00e-55 210.00
IUUC-Oba-075075 Oryza barthii 69.32 0.00e+00 1008.00
IUUC-Obr-076183 Oryza brachyantha 67.51 0.00e+00 1085.00
IUUC-Ogl-077691 Oryza glaberrima 73.98 0.00e+00 1263.00
IUUC-Ogu-078423 Oryza glumaepatula 73.98 0.00e+00 1262.00
IUUC-Oin-080107 Oryza indica 73.98 0.00e+00 1262.00
IUUC-Olo-080269 Oryza longistaminata 73.70 0.00e+00 1188.00
IUUC-Ome-081779 Oryza meridionalis 73.98 0.00e+00 1261.00
IUUC-Oni-082366 Oryza nivara 73.98 0.00e+00 1262.00
IUUC-Opu-083958 Oryza punctata 73.74 0.00e+00 1265.00
IUUC-Oru-084182 Oryza rufipogon 73.98 0.00e+00 1261.00
IUUC-Osa-085285 Oryza sativa 73.74 0.00e+00 1261.00
IUUC-Ola-086954 Oryzias latipes 91.24 0.00e+00 1968.00
IUUC-Olu-087685 Ostreococcus lucimarinus 57.52 0.00e+00 944.00
IUUC-Oga-088591 Otolemur garnettii 92.78 0.00e+00 2025.00
IUUC-Oar-089417 Ovis aries 91.08 0.00e+00 1883.00
IUUC-Ptr-091510 Pan troglodytes 94.23 0.00e+00 1811.00
IUUC-Pan-091886 Papio anubis 92.69 0.00e+00 2023.00
IUUC-Psi-093755 Pelodiscus sinensis 93.87 0.00e+00 1384.00
IUUC-Pma-094470 Petromyzon marinus 87.47 0.00e+00 1904.00
IUUC-Pno-094963 Phaeosphaeria nodorum 66.79 0.00e+00 1166.00
IUUC-Ppa-095479 Physcomitrella patens 73.04 0.00e+00 1293.00
IUUC-Pfo-097456 Poecilia formosa 93.20 0.00e+00 1999.00
IUUC-Pab-098075 Pongo abelii 86.04 0.00e+00 1842.00
IUUC-Pop-099557 Populus trichocarpa 71.84 0.00e+00 1278.00
IUUC-Pca-100717 Procavia capensis 98.99 9.00e-175 607.00
IUUC-Ppe-101675 Prunus persica 72.32 0.00e+00 1289.00
IUUC-Pva-103029 Pteropus vampyrus 94.10 0.00e+00 1348.00
IUUC-Pgr-103318 Puccinia graminis 68.05 0.00e+00 1214.00
IUUC-Ptt-103956 Puccinia triticina 67.89 0.00e+00 1214.00
IUUC-Pte-104399 Pyrenophora teres 62.74 0.00e+00 1175.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 62.51 0.00e+00 1174.00
IUUC-Rno-105784 Rattus norvegicus 92.48 0.00e+00 2029.00
IUUC-Sce-106206 Saccharomyces cerevisiae 57.70 0.00e+00 940.00
IUUC-Sha-106566 Sarcophilus harrisii 94.41 0.00e+00 1957.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 63.15 0.00e+00 1103.00
IUUC-Spo-108258 Schizosaccharomyces pombe 58.96 0.00e+00 1055.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 64.31 0.00e+00 1047.00
IUUC-Smo-109676 Selaginella moellendorffii 22.33 1.30e+00 28.90
IUUC-Sit-109760 Setaria italica 73.23 0.00e+00 1254.00
IUUC-Sly-111807 Solanum lycopersicum 73.32 0.00e+00 1298.00
IUUC-Stu-112869 Solanum tuberosum 68.70 0.00e+00 1282.00
IUUC-Sar-112950 Sorex araneus 38.31 4.00e-43 170.00
IUUC-Sbi-114863 Sorghum bicolor 73.61 0.00e+00 1261.00
IUUC-Sre-115092 Sporisorium reilianum 67.16 0.00e+00 1262.00
IUUC-Tgu-117214 Taeniopygia guttata 88.09 0.00e+00 1628.00
IUUC-Tru-118386 Takifugu rubripes 91.23 0.00e+00 2036.00
IUUC-Tsy-119550 Tarsius syrichta 97.89 2.00e-164 572.00
IUUC-Tni-120212 Tetraodon nigroviridis 91.48 0.00e+00 1920.00
IUUC-Tca-121353 Theobroma cacao 72.39 0.00e+00 1283.00
IUUC-Tre-122245 Trichoderma reesei 34.94 1.00e-52 202.00
IUUC-Tvi-122452 Trichoderma virens 64.42 0.00e+00 1118.00
IUUC-Tae-123692 Triticum aestivum 73.23 0.00e+00 1255.00
IUUC-Tur-126770 Triticum urartu 61.36 0.00e+00 1070.00
IUUC-Tme-126956 Tuber melanosporum 69.27 0.00e+00 1204.00
IUUC-Tbe-127873 Tupaia belangeri 33.65 1.00e-49 192.00
IUUC-Ttr-128212 Tursiops truncatus 89.28 0.00e+00 1908.00
IUUC-Uma-129327 Ustilago maydis 66.70 0.00e+00 1259.00
IUUC-Vda-129858 Verticillium dahliae 65.91 0.00e+00 1142.00
IUUC-Vpa-130743 Vicugna pacos 33.89 9.00e-51 195.00
IUUC-Vvi-131222 Vitis vinifera 72.44 0.00e+00 1268.00
IUUC-Xtr-131800 Xenopus tropicalis 79.05 0.00e+00 1677.00
IUUC-Xma-133216 Xiphophorus maculatus 94.02 0.00e+00 2000.00
IUUC-Yli-134482 Yarrowia lipolytica 53.95 0.00e+00 897.00
IUUC-Zma-134802 Zea mays 72.46 0.00e+00 1266.00
Created Date 25-Jun-2017

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