iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ola-086954

Ensembl Protein ID

ENSORLP00000010622.1

UniProt Accession

H2LWX5; H2LWX5_ORYLA

Genbank Protein ID

ENSORLP00000010622

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

BAAF04026409

Gene Name

upf1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSORLG00000008453.1	ENSORLT00000010623.1	ENSORLP00000010622.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	54.81	0.00e+00	924.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Oryzias latipes

Protein Sequence
(Fasta)

MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFDFTDFTL PSQTQTQGQT PSQLDSQQVN 60
GPDEGLLNGG LDDSVAKTSQ FLGELNFEED EEDAYYTKDL PVHACSYCGI HDPACVVYCN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTGTGG AGGCGTACGG GCCGAGCTCT CAGACCCTCA CCTTCCTGGA CACCGAGGAA 60
GCGGAGCTGC TTGGAGCGGA CACACAAGGC TCCGAGTTTG ACTTCACTGA CTTCACTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0043009--P:chordate embryonic development
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	68.01	0.00e+00	1120.00
IUUC-Aml-002008	Ailuropoda melanoleuca	90.02	0.00e+00	1977.00
IUUC-Atr-002632	Amborella trichopoda	65.30	0.00e+00	1215.00
IUUC-Apl-003997	Anas platyrhynchos	91.80	0.00e+00	1889.00
IUUC-Aca-004322	Anolis carolinensis	31.76	4.00e-54	206.00
IUUC-Aly-006521	Arabidopsis lyrata	68.44	0.00e+00	1195.00
IUUC-Ath-007059	Arabidopsis thaliana	68.20	0.00e+00	1194.00
IUUC-Ago-007801	Ashbya gossypii	53.00	0.00e+00	906.00
IUUC-Acl-008312	Aspergillus clavatus	64.90	0.00e+00	1139.00
IUUC-Afl-008429	Aspergillus flavus	64.43	0.00e+00	1135.00
IUUC-Afu-009092	Aspergillus fumigatus	64.76	0.00e+00	1136.00
IUUC-Ani-009317	Aspergillus nidulans	64.26	0.00e+00	1139.00
IUUC-Ang-009783	Aspergillus niger	57.31	0.00e+00	1132.00
IUUC-Aor-010178	Aspergillus oryzae	64.43	0.00e+00	1135.00
IUUC-Ate-010294	Aspergillus terreus	57.21	0.00e+00	1139.00
IUUC-Ame-010774	Astyanax mexicanus	72.87	0.00e+00	1169.00
IUUC-Bgr-012293	Blumeria graminis	64.23	0.00e+00	1134.00
IUUC-Bta-012382	Bos taurus	89.96	0.00e+00	1978.00
IUUC-Bci-013937	Botrytis cinerea	64.48	0.00e+00	1129.00
IUUC-Bdi-014612	Brachypodium distachyon	69.49	0.00e+00	1205.00
IUUC-Bol-015145	Brassica oleracea	67.41	0.00e+00	1184.00
IUUC-Bra-017370	Brassica rapa	66.00	0.00e+00	1150.00
IUUC-Cel-018240	Caenorhabditis elegans	53.91	0.00e+00	961.00
IUUC-Cja-019892	Callithrix jacchus	91.18	0.00e+00	1894.00
IUUC-Cfa-020700	Canis familiaris	89.72	0.00e+00	1977.00
IUUC-Cpo-021510	Cavia porcellus	89.18	0.00e+00	1988.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	56.48	0.00e+00	947.00
IUUC-Csa-023665	Chlorocebus sabaeus	89.46	0.00e+00	1971.00
IUUC-Cin-025798	Ciona intestinalis	75.29	0.00e+00	1318.00
IUUC-Csv-025901	Ciona savignyi	69.96	0.00e+00	1547.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	61.93	0.00e+00	1107.00
IUUC-Cne-027014	Cryptococcus neoformans	60.40	0.00e+00	1145.00
IUUC-Dre-028705	Danio rerio	90.53	0.00e+00	1975.00
IUUC-Dor-030369	Dipodomys ordii	88.37	0.00e+00	1825.00
IUUC-Dme-031767	Drosophila melanogaster	68.98	0.00e+00	1348.00
IUUC-Ete-032800	Echinops telfairi	33.57	1.00e-52	201.00
IUUC-Eca-033840	Equus caballus	91.51	0.00e+00	1893.00
IUUC-Fca-035466	Felis catus	91.51	0.00e+00	1890.00
IUUC-Fal-037548	Ficedula albicollis	89.86	0.00e+00	1855.00
IUUC-Fox-038023	Fusarium oxysporum	61.06	0.00e+00	1093.00
IUUC-Gmo-039285	Gadus morhua	91.95	0.00e+00	1968.00
IUUC-Ggr-039810	Gaeumannomyces graminis	63.16	0.00e+00	1120.00
IUUC-Gga-040972	Gallus gallus	89.69	0.00e+00	1953.00
IUUC-Gac-042075	Gasterosteus aculeatus	94.81	0.00e+00	2063.00
IUUC-Gma-042713	Glycine max	64.67	0.00e+00	1239.00
IUUC-Ggo-045398	Gorilla gorilla	91.49	0.00e+00	1890.00
IUUC-Hsa-046152	Homo sapiens	89.46	0.00e+00	1971.00
IUUC-Hvu-047555	Hordeum vulgare	67.87	0.00e+00	681.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	92.09	0.00e+00	1865.00
IUUC-Kpa-049205	Komagataella pastoris	49.11	0.00e+00	758.00
IUUC-Lch-049587	Latimeria chalumnae	94.99	0.00e+00	1284.00
IUUC-Lpe-051059	Leersia perrieri	69.75	0.00e+00	1212.00
IUUC-Loc-051911	Lepisosteus oculatus	92.58	0.00e+00	1964.00
IUUC-Lma-053007	Leptosphaeria maculans	58.52	0.00e+00	1110.00
IUUC-Laf-054234	Loxodonta africana	89.26	0.00e+00	1958.00
IUUC-Mcc-054762	Macaca mulatta	89.85	0.00e+00	1974.00
IUUC-Meu-056677	Macropus eugenii	88.87	0.00e+00	832.00
IUUC-Mor-057147	Magnaporthe oryzae	63.61	0.00e+00	1112.00
IUUC-Mpo-057314	Magnaporthe poae	63.16	0.00e+00	1120.00
IUUC-Mtr-058329	Medicago truncatula	57.13	0.00e+00	1245.00
IUUC-Mla-059094	Melampsora laricipopulina	62.08	0.00e+00	630.00
IUUC-Mga-060126	Meleagris gallopavo	91.31	0.00e+00	1866.00
IUUC-Mvi-060373	Microbotryum violaceum	65.83	0.00e+00	1210.00
IUUC-Mmr-060628	Microcebus murinus	89.76	0.00e+00	1972.00
IUUC-Mdo-061858	Monodelphis domestica	91.17	0.00e+00	1891.00
IUUC-Mmu-064116	Mus musculus	89.32	0.00e+00	1963.00
IUUC-Mac-065136	Musa acuminata	66.40	0.00e+00	1203.00
IUUC-Mpu-066463	Mustela putorius furo	89.72	0.00e+00	1976.00
IUUC-Mlu-068098	Myotis lucifugus	89.51	0.00e+00	1964.00
IUUC-Nfi-068370	Neosartorya fischeri	64.76	0.00e+00	1136.00
IUUC-Ncr-068792	Neurospora crassa	63.30	0.00e+00	1106.00
IUUC-Nle-070102	Nomascus leucogenys	91.40	0.00e+00	1882.00
IUUC-Opr-070620	Ochotona princeps	85.43	0.00e+00	1739.00
IUUC-Ont-072685	Oreochromis niloticus	93.92	0.00e+00	2033.00
IUUC-Oan-073665	Ornithorhynchus anatinus	89.61	0.00e+00	1961.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.41	1.00e-54	208.00
IUUC-Oba-075075	Oryza barthii	60.29	0.00e+00	961.00
IUUC-Obr-076183	Oryza brachyantha	59.05	0.00e+00	1038.00
IUUC-Ogl-077691	Oryza glaberrima	65.15	0.00e+00	1211.00
IUUC-Ogu-078423	Oryza glumaepatula	65.15	0.00e+00	1211.00
IUUC-Oin-080107	Oryza indica	65.15	0.00e+00	1211.00
IUUC-Olo-080269	Oryza longistaminata	64.75	0.00e+00	1140.00
IUUC-Ome-081779	Oryza meridionalis	65.15	0.00e+00	1209.00
IUUC-Oni-082366	Oryza nivara	65.15	0.00e+00	1211.00
IUUC-Opu-083958	Oryza punctata	70.22	0.00e+00	1212.00
IUUC-Oru-084182	Oryza rufipogon	65.15	0.00e+00	1210.00
IUUC-Osa-085285	Oryza sativa	64.98	0.00e+00	1212.00
IUUC-Olu-087685	Ostreococcus lucimarinus	54.94	0.00e+00	902.00
IUUC-Oga-088591	Otolemur garnettii	89.54	0.00e+00	1973.00
IUUC-Oar-089417	Ovis aries	88.75	0.00e+00	1843.00
IUUC-Ptr-091510	Pan troglodytes	90.66	0.00e+00	1770.00
IUUC-Pan-091886	Papio anubis	89.46	0.00e+00	1971.00
IUUC-Psi-093755	Pelodiscus sinensis	91.79	0.00e+00	1363.00
IUUC-Pma-094470	Petromyzon marinus	84.67	0.00e+00	1836.00
IUUC-Pno-094963	Phaeosphaeria nodorum	63.75	0.00e+00	1110.00
IUUC-Ppa-095479	Physcomitrella patens	68.93	0.00e+00	1239.00
IUUC-Pfo-097456	Poecilia formosa	94.10	0.00e+00	2051.00
IUUC-Pab-098075	Pongo abelii	83.30	0.00e+00	1793.00
IUUC-Pop-099557	Populus trichocarpa	57.37	0.00e+00	1235.00
IUUC-Pca-100717	Procavia capensis	98.65	7.00e-175	607.00
IUUC-Ppe-101675	Prunus persica	59.60	0.00e+00	1239.00
IUUC-Pva-103029	Pteropus vampyrus	88.72	0.00e+00	1292.00
IUUC-Pgr-103318	Puccinia graminis	62.93	0.00e+00	1163.00
IUUC-Ptt-103956	Puccinia triticina	60.46	0.00e+00	1167.00
IUUC-Pte-104399	Pyrenophora teres	56.79	0.00e+00	1121.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	56.59	0.00e+00	1118.00
IUUC-Rno-105784	Rattus norvegicus	89.32	0.00e+00	1988.00
IUUC-Sce-106206	Saccharomyces cerevisiae	54.81	0.00e+00	895.00
IUUC-Sha-106566	Sarcophilus harrisii	91.32	0.00e+00	1885.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	59.25	0.00e+00	1031.00
IUUC-Spo-108258	Schizosaccharomyces pombe	56.77	0.00e+00	993.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	61.03	0.00e+00	993.00
IUUC-Sit-109760	Setaria italica	60.72	0.00e+00	1209.00
IUUC-Sly-111807	Solanum lycopersicum	65.34	0.00e+00	1243.00
IUUC-Stu-112869	Solanum tuberosum	69.31	0.00e+00	1226.00
IUUC-Sar-112950	Sorex araneus	37.97	8.00e-43	168.00
IUUC-Sbi-114863	Sorghum bicolor	61.02	0.00e+00	1207.00
IUUC-Sre-115092	Sporisorium reilianum	62.36	0.00e+00	1195.00
IUUC-Tgu-117214	Taeniopygia guttata	84.82	0.00e+00	1576.00
IUUC-Tru-118386	Takifugu rubripes	86.95	0.00e+00	1956.00
IUUC-Tsy-119550	Tarsius syrichta	91.61	8.00e-159	554.00
IUUC-Tni-120212	Tetraodon nigroviridis	91.52	0.00e+00	1934.00
IUUC-Tca-121353	Theobroma cacao	70.32	0.00e+00	1229.00
IUUC-Tre-122245	Trichoderma reesei	34.48	4.00e-52	201.00
IUUC-Tvi-122452	Trichoderma virens	55.18	0.00e+00	1064.00
IUUC-Tae-123692	Triticum aestivum	69.71	0.00e+00	1202.00
IUUC-Tur-126770	Triticum urartu	58.39	0.00e+00	1018.00
IUUC-Tme-126956	Tuber melanosporum	64.11	0.00e+00	1141.00
IUUC-Tbe-127873	Tupaia belangeri	33.89	5.00e-50	192.00
IUUC-Ttr-128212	Tursiops truncatus	86.17	0.00e+00	1852.00
IUUC-Uma-129327	Ustilago maydis	66.75	0.00e+00	1193.00
IUUC-Vda-129858	Verticillium dahliae	62.35	0.00e+00	1078.00
IUUC-Vpa-130743	Vicugna pacos	33.18	1.00e-50	194.00
IUUC-Vvi-131222	Vitis vinifera	69.40	0.00e+00	1214.00
IUUC-Xtr-131800	Xenopus tropicalis	76.84	0.00e+00	1648.00
IUUC-Xma-133216	Xiphophorus maculatus	93.92	0.00e+00	2048.00
IUUC-Yli-134482	Yarrowia lipolytica	50.95	0.00e+00	848.00
IUUC-Zma-134802	Zea mays	69.30	0.00e+00	1214.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence