iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Eeu-034734

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Recombination activating protein 1

Genbank Nucleotide ID

AY249871

Gene Name

TRAF6; RAG1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSEEUG00000000085.1	ENSEEUT00000000085.1	ENSEEUP00000000075.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.30e-07	29.9	66	127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrli 65
           + + CpI l   r+ v +p+G+ + +++I k +++ g++cPv+++ l e++l P ++ +r i
   Q: 66   SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 127
           5689*****************************999999*****************999977 PP

Organism

Erinaceus europaeus

Protein Sequence
(Fasta)

MSLLNCENSC GSSQSESDCC AAMASSCSAS AKDDSVGGTA STGNLSNSFV EEVQGYDVEF 60
DPPLESKYEC PICLMALREA VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTCTCC TAAACTGTGA AAACAGCTGT GGATCCAGCC AGTCGGAAAG TGACTGCTGT 60
GCTGCCATGG CCAGCTCCTG TAGTGCGTCA GCAAAAGACG ACAGTGTGGG TGGAACTGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0539--Nucleus

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF10426--zf-RAG1

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001262	Ailuropoda melanoleuca	92.31	1.00e-138	486.00
IUUC-Apl-004062	Anas platyrhynchos	64.67	0.00e+00	691.00
IUUC-Aca-004636	Anolis carolinensis	63.39	0.00e+00	667.00
IUUC-Acl-008349	Aspergillus clavatus	26.60	4.00e-12	65.50
IUUC-Ate-010296	Aspergillus terreus	26.38	7.00e-13	68.20
IUUC-Ame-011682	Astyanax mexicanus	50.68	1.00e-139	489.00
IUUC-Bta-012692	Bos taurus	80.66	0.00e+00	858.00
IUUC-Bci-013998	Botrytis cinerea	24.76	2.00e-12	66.60
IUUC-Bdi-014466	Brachypodium distachyon	32.17	6.00e-08	50.80
IUUC-Cja-019426	Callithrix jacchus	85.88	0.00e+00	888.00
IUUC-Cfa-020948	Canis familiaris	81.22	0.00e+00	745.00
IUUC-Cpo-021378	Cavia porcellus	80.70	0.00e+00	839.00
IUUC-Csa-024045	Chlorocebus sabaeus	86.04	0.00e+00	900.00
IUUC-Cho-024973	Choloepus hoffmanni	71.49	8.00e-95	340.00
IUUC-Cin-025234	Ciona intestinalis	39.51	2.00e-44	173.00
IUUC-Csv-026300	Ciona savignyi	42.34	1.00e-44	172.00
IUUC-Cgl-026455	Colletotrichum gloeosporioides	25.81	2.00e-14	73.20
IUUC-Dre-027557	Danio rerio	53.16	1.00e-151	529.00
IUUC-Dno-030032	Dasypus novemcinctus	89.74	2.00e-130	457.00
IUUC-Dor-030790	Dipodomys ordii	84.25	0.00e+00	875.00
IUUC-Dse-031478	Dothistroma septosporum	25.33	8.00e-12	65.10
IUUC-Dme-031921	Drosophila melanogaster	25.17	5.00e-37	148.00
IUUC-Ete-032952	Echinops telfairi	78.75	9.00e-146	509.00
IUUC-Eca-033924	Equus caballus	96.62	1.00e-116	412.00
IUUC-Fca-036222	Felis catus	93.72	7.00e-114	403.00
IUUC-Fal-036834	Ficedula albicollis	65.68	0.00e+00	627.00
IUUC-Fox-037935	Fusarium oxysporum	30.20	7.00e-22	98.20
IUUC-Gmo-039061	Gadus morhua	63.76	2.00e-84	306.00
IUUC-Ggr-040084	Gaeumannomyces graminis	28.38	2.00e-13	70.10
IUUC-Gga-040599	Gallus gallus	65.38	0.00e+00	700.00
IUUC-Gac-041977	Gasterosteus aculeatus	60.70	9.00e-81	293.00
IUUC-Ggo-044508	Gorilla gorilla	80.99	0.00e+00	818.00
IUUC-Hsa-046349	Homo sapiens	86.42	0.00e+00	905.00
IUUC-Itr-047966	Ictidomys tridecemlineatus	83.99	0.00e+00	859.00
IUUC-Lch-049821	Latimeria chalumnae	60.50	0.00e+00	649.00
IUUC-Loc-051995	Lepisosteus oculatus	64.57	2.00e-83	302.00
IUUC-Laf-054115	Loxodonta africana	77.68	0.00e+00	828.00
IUUC-Mcc-055298	Macaca mulatta	86.04	0.00e+00	899.00
IUUC-Mor-057263	Magnaporthe oryzae	30.09	1.00e-18	87.80
IUUC-Mpo-057517	Magnaporthe poae	28.96	2.00e-15	77.00
IUUC-Mga-059340	Meleagris gallopavo	65.38	0.00e+00	697.00
IUUC-Mvi-060553	Microbotryum violaceum	27.96	1.00e-13	70.90
IUUC-Mmr-061063	Microcebus murinus	83.33	0.00e+00	853.00
IUUC-Mdo-062075	Monodelphis domestica	75.05	0.00e+00	805.00
IUUC-Mmu-063780	Mus musculus	81.73	0.00e+00	818.00
IUUC-Mpu-065748	Mustela putorius furo	90.84	2.00e-141	495.00
IUUC-Mlu-067888	Myotis lucifugus	81.97	0.00e+00	852.00
IUUC-Nfi-068307	Neosartorya fischeri	26.05	2.00e-11	63.20
IUUC-Ncr-068632	Neurospora crassa	28.02	3.00e-17	82.80
IUUC-Nle-069234	Nomascus leucogenys	86.04	0.00e+00	900.00
IUUC-Opr-070393	Ochotona princeps	95.65	1.00e-115	409.00
IUUC-Ont-072459	Oreochromis niloticus	62.88	2.00e-86	312.00
IUUC-Oan-073578	Ornithorhynchus anatinus	62.67	0.00e+00	660.00
IUUC-Ocu-074201	Oryctolagus cuniculus	83.36	0.00e+00	865.00
IUUC-Obr-076500	Oryza brachyantha	30.70	1.00e-07	50.40
IUUC-Ola-087319	Oryzias latipes	61.86	5.00e-86	311.00
IUUC-Olu-087748	Ostreococcus lucimarinus	26.39	4.00e-07	48.50
IUUC-Oga-087936	Otolemur garnettii	82.46	0.00e+00	859.00
IUUC-Oar-089379	Ovis aries	80.48	0.00e+00	863.00
IUUC-Ptr-090758	Pan troglodytes	86.42	0.00e+00	899.00
IUUC-Pan-092590	Papio anubis	86.23	0.00e+00	900.00
IUUC-Psi-093948	Pelodiscus sinensis	66.24	0.00e+00	721.00
IUUC-Pma-094434	Petromyzon marinus	52.99	5.00e-74	271.00
IUUC-Pfo-096912	Poecilia formosa	63.48	4.00e-86	311.00
IUUC-Pab-097651	Pongo abelii	86.42	0.00e+00	902.00
IUUC-Pca-100958	Procavia capensis	79.68	3.00e-178	617.00
IUUC-Pva-103247	Pteropus vampyrus	88.14	7.00e-123	433.00
IUUC-Rno-104994	Rattus norvegicus	80.23	0.00e+00	826.00
IUUC-Sha-106494	Sarcophilus harrisii	77.02	0.00e+00	814.00
IUUC-Ssl-108580	Sclerotinia sclerotiorum	24.76	1.00e-12	67.00
IUUC-Sar-113375	Sorex araneus	83.49	0.00e+00	859.00
IUUC-Sre-115218	Sporisorium reilianum	25.99	1.00e-12	67.80
IUUC-Ssc-115417	Sus scrofa	82.10	0.00e+00	870.00
IUUC-Tgu-117232	Taeniopygia guttata	65.75	0.00e+00	682.00
IUUC-Tru-118321	Takifugu rubripes	61.34	3.00e-84	305.00
IUUC-Tni-120475	Tetraodon nigroviridis	52.45	2.00e-145	508.00
IUUC-Tbe-127719	Tupaia belangeri	73.30	0.00e+00	726.00
IUUC-Ttr-129264	Tursiops truncatus	86.61	9.00e-120	423.00
IUUC-Uma-129620	Ustilago maydis	29.13	3.00e-17	83.20
IUUC-Vpa-130244	Vicugna pacos	85.83	8.00e-122	430.00
IUUC-Xtr-131948	Xenopus tropicalis	58.14	0.00e+00	633.00
IUUC-Xma-133132	Xiphophorus maculatus	61.73	3.00e-87	315.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence