iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	miRNAMap	RAID2
Protein-protein Interaction
IID	iRefIndex	PINA	Mentha
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.20e-13	51.3	312	359

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           k+C +Cg +++d+ +l+ C++C++ +H  Cl ++  e+ p++e + C+ C+
   Q: 312  KSCTICGTSENDD-KLLFCDDCDRGYHLYCLTPA-LEKAPDDE-YSCRLCQ 359
           79*********88.6*******************.*******8.******7 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MISENGYMDL MRNCIKWNSR QMEDRKKRLR FPYYEHQTAT AQRESRFTTR NVDHMYPSND 60
PNTVVQFATE RWKKSKSQPP SDAVEMSMFL RENPSIQVAI DHLTPQVVGP TTESVSDSSN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAGACAATG ATCTCGGAAA ACGGATATAT GGACCTGATG CGGAACTGCA TTAAATGGAA 60
TTCCCGGCAA ATGGAGGATC GTAAAAAACG GTTAGTTATT GATGTTTCGG CTACTTAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR025750--Requiem/DPF_N_dom
IPR013087--Znf_C2H2_type
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00028--ZINC_FINGER_C2H2_1
PS50157--ZINC_FINGER_C2H2_2

Pfam

PF00628--PHD
PF14051--Requiem_N

SMART

SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0008270--F:zinc ion binding

KEGG

cel:CELE_C28H8.9

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001805	Ailuropoda melanoleuca	44.28	1.00e-44	172.00
IUUC-Apl-003424	Anas platyrhynchos	47.49	6.00e-45	173.00
IUUC-Aca-005022	Anolis carolinensis	32.30	8.00e-48	182.00
IUUC-Ame-011868	Astyanax mexicanus	29.59	3.00e-41	161.00
IUUC-Bta-013164	Bos taurus	31.27	2.00e-47	181.00
IUUC-Bdi-014990	Brachypodium distachyon	35.20	1.00e-09	56.20
IUUC-Cja-019565	Callithrix jacchus	31.27	2.00e-47	181.00
IUUC-Cfa-021165	Canis familiaris	46.43	3.00e-27	117.00
IUUC-Cpo-021757	Cavia porcellus	47.54	4.00e-46	177.00
IUUC-Csa-024262	Chlorocebus sabaeus	47.54	4.00e-46	177.00
IUUC-Cin-025528	Ciona intestinalis	30.45	9.00e-42	162.00
IUUC-Csv-026070	Ciona savignyi	60.19	4.00e-37	147.00
IUUC-Cne-026801	Cryptococcus neoformans	46.60	2.00e-25	110.00
IUUC-Dre-027738	Danio rerio	30.85	5.00e-48	183.00
IUUC-Dno-029041	Dasypus novemcinctus	30.29	2.00e-44	171.00
IUUC-Dor-030178	Dipodomys ordii	48.07	9.00e-45	172.00
IUUC-Dme-032134	Drosophila melanogaster	64.15	2.00e-41	162.00
IUUC-Ete-033133	Echinops telfairi	49.70	3.00e-43	167.00
IUUC-Eca-034251	Equus caballus	31.27	2.00e-47	181.00
IUUC-Fca-036522	Felis catus	43.50	1.00e-44	172.00
IUUC-Fal-036898	Ficedula albicollis	48.04	2.00e-45	175.00
IUUC-Gmo-039263	Gadus morhua	46.67	5.00e-44	170.00
IUUC-Gga-041265	Gallus gallus	47.49	5.00e-45	173.00
IUUC-Gac-042351	Gasterosteus aculeatus	30.17	1.00e-46	179.00
IUUC-Ggo-045528	Gorilla gorilla	31.44	4.00e-46	177.00
IUUC-Hsa-046855	Homo sapiens	31.27	2.00e-47	181.00
IUUC-Itr-048666	Ictidomys tridecemlineatus	29.45	1.00e-43	168.00
IUUC-Lch-049484	Latimeria chalumnae	40.84	2.00e-35	141.00
IUUC-Loc-052830	Lepisosteus oculatus	29.77	3.00e-41	160.00
IUUC-Laf-053772	Loxodonta africana	47.54	3.00e-46	177.00
IUUC-Mcc-054671	Macaca mulatta	31.44	4.00e-48	184.00
IUUC-Meu-056031	Macropus eugenii	32.39	5.00e-49	186.00
IUUC-Mga-059248	Meleagris gallopavo	47.49	5.00e-45	174.00
IUUC-Mvi-060531	Microbotryum violaceum	41.94	5.00e-26	112.00
IUUC-Mmr-061299	Microcebus murinus	47.54	4.00e-46	177.00
IUUC-Mdo-061983	Monodelphis domestica	31.27	3.00e-48	184.00
IUUC-Mmu-063734	Mus musculus	31.11	8.00e-47	179.00
IUUC-Mpu-066235	Mustela putorius furo	47.54	4.00e-46	177.00
IUUC-Mlu-067198	Myotis lucifugus	43.50	3.00e-45	174.00
IUUC-Nle-069593	Nomascus leucogenys	32.74	6.00e-49	186.00
IUUC-Opr-070241	Ochotona princeps	48.07	9.00e-45	172.00
IUUC-Ont-072320	Oreochromis niloticus	31.62	2.00e-49	188.00
IUUC-Oan-072756	Ornithorhynchus anatinus	63.92	5.00e-37	147.00
IUUC-Ocu-074100	Oryctolagus cuniculus	46.43	3.00e-27	116.00
IUUC-Ola-086430	Oryzias latipes	30.00	1.00e-42	165.00
IUUC-Oga-088159	Otolemur garnettii	47.54	5.00e-46	177.00
IUUC-Oar-090218	Ovis aries	31.27	2.00e-47	181.00
IUUC-Ptr-091481	Pan troglodytes	41.87	8.00e-42	162.00
IUUC-Pan-092749	Papio anubis	31.27	2.00e-47	181.00
IUUC-Psi-093080	Pelodiscus sinensis	31.01	2.00e-48	184.00
IUUC-Pma-094466	Petromyzon marinus	44.06	4.00e-44	170.00
IUUC-Pfo-096233	Poecilia formosa	32.23	7.00e-50	189.00
IUUC-Pab-098560	Pongo abelii	30.22	5.00e-45	173.00
IUUC-Pca-100612	Procavia capensis	55.74	1.00e-36	145.00
IUUC-Pva-103052	Pteropus vampyrus	32.83	5.00e-49	186.00
IUUC-Pgr-103522	Puccinia graminis	42.17	2.00e-15	76.60
IUUC-Rno-105001	Rattus norvegicus	29.68	2.00e-44	171.00
IUUC-Sha-106820	Sarcophilus harrisii	49.69	4.00e-41	160.00
IUUC-Sar-113460	Sorex araneus	64.89	3.00e-36	144.00
IUUC-Sre-115066	Sporisorium reilianum	49.06	1.00e-26	114.00
IUUC-Ssc-115701	Sus scrofa	30.22	6.00e-45	173.00
IUUC-Tgu-117306	Taeniopygia guttata	48.04	1.00e-45	175.00
IUUC-Tru-118192	Takifugu rubripes	40.56	4.00e-46	177.00
IUUC-Tni-120652	Tetraodon nigroviridis	30.73	2.00e-47	181.00
IUUC-Tbe-128093	Tupaia belangeri	32.80	2.00e-46	178.00
IUUC-Ttr-129279	Tursiops truncatus	32.48	1.00e-48	185.00
IUUC-Uma-129445	Ustilago maydis	46.67	5.00e-26	112.00
IUUC-Vpa-130748	Vicugna pacos	49.39	4.00e-42	164.00
IUUC-Xtr-131937	Xenopus tropicalis	29.72	2.00e-45	175.00
IUUC-Xma-133095	Xiphophorus maculatus	30.69	3.00e-44	171.00
IUUC-Zma-135613	Zea mays	28.80	4.00e-10	59.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence