iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028272

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Lysine (K)-specific demethylase 2Bb

Genbank Nucleotide ID

BX005006

Gene Name

kdm2bb; im:7154787

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000046010.5	ENSDART00000102530.3	ENSDARP00000093306.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.50e-13	51.6	595	660

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggede.......k...slveCekCrewfHpaClkls.....veeelpnsekwiCpkCrsk 54
           +vC vCge+g+++       k   +l+eC++C+e++HpaClk +     v++elpn+  w+CpkC+++
   Q: 595  AVCVVCGEAGKEDtvegeddKfsmMLMECSICSEIIHPACLKDKdaggvVNDELPNC--WECPKCNHA 660
           79*********9977776652778*********************************..*******85 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MEACAESGRK LRSICRRMYD ENEDLSDVEE ITNVRGFSLE DKLDSASYNS QLVQFMEGKD 60
FTYEYVQREA LRTPLVFKAK DGLGIRMPDP EFTVSEIKGL VGSRRPVDVM DVSTQKGSEM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGTTTACTG CCAGAGCCGC ACCGTGCACA AATAAACAGC GCGGAGACTC ACCATTGCGA 60
AGCCGGATAA AAGCGCAGAC GTGCGGCTGG ACGCCTTGAG TTTGGCTCTG CTCAGATACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001810--F-box_dom
IPR003347--JmjC_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp
IPR002857--Znf_CXXC
IPR011011--Znf_FYVE_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51184--JMJC
PS51058--ZF_CXXC
PS50016--ZF_PHD_2

Pfam

PF00646--F-box
PF02373--JmjC
PF16866--PHD_4
PF02008--zf-CXXC

SMART

SM00558--JmjC
SM00367--LRR_CC

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0048701--P:embryonic cranial skeleton morphogenesis
GO:0009303--P:rRNA transcription

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001358	Ailuropoda melanoleuca	77.87	3.00e-177	616.00
IUUC-Apl-003787	Anas platyrhynchos	65.30	0.00e+00	1474.00
IUUC-Aca-004247	Anolis carolinensis	62.44	0.00e+00	920.00
IUUC-Bta-013531	Bos taurus	65.23	0.00e+00	1020.00
IUUC-Cja-018876	Callithrix jacchus	61.38	0.00e+00	914.00
IUUC-Cfa-020857	Canis familiaris	65.03	0.00e+00	1015.00
IUUC-Cpo-021967	Cavia porcellus	64.00	0.00e+00	1006.00
IUUC-Csa-023210	Chlorocebus sabaeus	66.09	0.00e+00	1034.00
IUUC-Cho-024541	Choloepus hoffmanni	44.86	1.00e-130	461.00
IUUC-Dno-030034	Dasypus novemcinctus	62.61	0.00e+00	964.00
IUUC-Dor-030736	Dipodomys ordii	76.30	5.00e-166	578.00
IUUC-Dse-031402	Dothistroma septosporum	46.59	1.00e-63	239.00
IUUC-Ete-032467	Echinops telfairi	51.04	0.00e+00	639.00
IUUC-Eca-034255	Equus caballus	64.89	0.00e+00	936.00
IUUC-Eeu-035038	Erinaceus europaeus	68.44	1.00e-154	541.00
IUUC-Fca-035786	Felis catus	63.07	0.00e+00	1457.00
IUUC-Fal-037589	Ficedula albicollis	64.94	0.00e+00	1563.00
IUUC-Gmo-038781	Gadus morhua	74.60	0.00e+00	749.00
IUUC-Gga-041103	Gallus gallus	68.28	0.00e+00	900.00
IUUC-Gac-041304	Gasterosteus aculeatus	65.98	0.00e+00	1571.00
IUUC-Ggo-044522	Gorilla gorilla	58.49	9.00e-158	551.00
IUUC-Hsa-045877	Homo sapiens	65.58	0.00e+00	1015.00
IUUC-Lch-049950	Latimeria chalumnae	65.78	0.00e+00	1605.00
IUUC-Loc-051972	Lepisosteus oculatus	70.10	0.00e+00	1087.00
IUUC-Lma-053190	Leptosphaeria maculans	42.52	2.00e-62	235.00
IUUC-Laf-053623	Loxodonta africana	74.47	6.00e-177	615.00
IUUC-Mcc-054943	Macaca mulatta	66.12	0.00e+00	1021.00
IUUC-Meu-056259	Macropus eugenii	62.95	0.00e+00	1504.00
IUUC-Mga-059671	Meleagris gallopavo	66.71	0.00e+00	966.00
IUUC-Mmr-061003	Microcebus murinus	64.66	0.00e+00	1008.00
IUUC-Mdo-062567	Monodelphis domestica	55.20	0.00e+00	706.00
IUUC-Mmu-063584	Mus musculus	64.27	0.00e+00	1011.00
IUUC-Mpu-066056	Mustela putorius furo	77.87	1.00e-177	617.00
IUUC-Mlu-067850	Myotis lucifugus	66.08	0.00e+00	993.00
IUUC-Nle-069837	Nomascus leucogenys	63.65	0.00e+00	1364.00
IUUC-Opr-070943	Ochotona princeps	79.11	3.00e-156	546.00
IUUC-Ont-071663	Oreochromis niloticus	68.94	0.00e+00	1636.00
IUUC-Oan-072934	Ornithorhynchus anatinus	80.47	6.00e-151	528.00
IUUC-Ocu-074706	Oryctolagus cuniculus	64.61	0.00e+00	1004.00
IUUC-Ola-086543	Oryzias latipes	68.27	0.00e+00	1651.00
IUUC-Oga-088671	Otolemur garnettii	66.94	0.00e+00	769.00
IUUC-Oar-089560	Ovis aries	62.47	0.00e+00	991.00
IUUC-Ptr-090875	Pan troglodytes	65.96	0.00e+00	1016.00
IUUC-Pan-091788	Papio anubis	65.56	0.00e+00	983.00
IUUC-Psi-093382	Pelodiscus sinensis	64.95	0.00e+00	1531.00
IUUC-Pma-094687	Petromyzon marinus	57.76	9.00e-92	331.00
IUUC-Ppa-095609	Physcomitrella patens	42.06	2.00e-58	219.00
IUUC-Pfo-096272	Poecilia formosa	66.38	0.00e+00	1558.00
IUUC-Pab-097907	Pongo abelii	65.71	0.00e+00	1018.00
IUUC-Pca-100628	Procavia capensis	61.80	6.00e-141	495.00
IUUC-Pva-102416	Pteropus vampyrus	56.72	0.00e+00	708.00
IUUC-Rno-105722	Rattus norvegicus	70.65	3.00e-155	543.00
IUUC-Sha-106626	Sarcophilus harrisii	57.69	0.00e+00	1305.00
IUUC-Smo-109024	Selaginella moellendorffii	39.85	4.00e-59	222.00
IUUC-Sar-113568	Sorex araneus	55.73	0.00e+00	675.00
IUUC-Ssc-115918	Sus scrofa	62.07	0.00e+00	692.00
IUUC-Tgu-117229	Taeniopygia guttata	65.69	0.00e+00	929.00
IUUC-Tru-118638	Takifugu rubripes	66.36	0.00e+00	1549.00
IUUC-Tsy-119293	Tarsius syrichta	53.69	0.00e+00	686.00
IUUC-Tbe-127654	Tupaia belangeri	53.59	0.00e+00	651.00
IUUC-Ttr-128821	Tursiops truncatus	56.79	0.00e+00	855.00
IUUC-Uma-129458	Ustilago maydis	40.70	1.00e-60	228.00
IUUC-Vpa-130655	Vicugna pacos	55.59	0.00e+00	675.00
IUUC-Xtr-131823	Xenopus tropicalis	62.56	0.00e+00	939.00
IUUC-Xma-133305	Xiphophorus maculatus	69.99	0.00e+00	1050.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence