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Tag Content
UUCD2 ID IUUC-Xtr-132008
UUCD1 version UUC-XeT-00828
Ensembl Protein ID ENSXETP00000017471.2
UniProt Accession F7BDA5; F7BDA5_XENTR
Genbank Protein ID ENSXETP00000017471
Protein Name Lysine (K)-specific demethylase 5B
Genbank Nucleotide ID AAMC01095099
Gene Name kdm5b
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSXETG00000007973.4 ENSXETT00000017471.2 ENSXETP00000017471.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 2.40e-17 63.0 284 329
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 4    ClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ClvCg+g++++  l+ C+ C++ +H  Cl ++  +++p+ + w CpkC 
   Q: 284  CLVCGSGSDED-RLLLCDGCDDSYHTFCLIPP-LQDVPKGD-WRCPKCL 329
           *********88.5*******************.*******7.******5 PP
   
Organism Xenopus tropicalis
Protein Sequence
(Fasta)
EMEFVPPPEC PVFEPTWEEF ADPFAFINKI RPIAERSGIC KVRPPPDWQP PFACDVDKLH 60
FTPRIQRLNE LEAQTRVKLN FLDQIAKFWE LQGCTLKIPH VERKILDLFQ LNKLVAEDGG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Xtr-132008|E3,PHD|Xenopus tropicalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GAGATGGAGT TCGTGCCCCC GCCGGAGTGC CCAGTTTTCG AGCCCACCTG GGAGGAATTC 60
GCTGACCCCT TTGCGTTTAT TAATAAAATC CGACCGATTG CTGAACGGAG TGGGATCTGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Xtr-132008|E3,PHD|Xenopus tropicalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2
SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD
Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000552 Aegilops tauschii 41.77 6.00e-95 343.00
IUUC-Aml-001963 Ailuropoda melanoleuca 70.49 0.00e+00 2053.00
IUUC-Atr-002595 Amborella trichopoda 33.94 3.00e-118 420.00
IUUC-Apl-003770 Anas platyrhynchos 74.98 0.00e+00 1891.00
IUUC-Aca-004867 Anolis carolinensis 70.87 0.00e+00 2157.00
IUUC-Acl-008162 Aspergillus clavatus 31.45 5.00e-115 409.00
IUUC-Afl-008625 Aspergillus flavus 29.04 5.00e-111 396.00
IUUC-Afu-008796 Aspergillus fumigatus 31.39 3.00e-116 414.00
IUUC-Aor-010155 Aspergillus oryzae 29.04 6.00e-111 396.00
IUUC-Ate-010453 Aspergillus terreus 29.41 1.00e-108 388.00
IUUC-Ame-010620 Astyanax mexicanus 61.70 0.00e+00 1850.00
IUUC-Bta-012733 Bos taurus 70.55 0.00e+00 2046.00
IUUC-Bdi-014050 Brachypodium distachyon 34.95 3.00e-117 417.00
IUUC-Bol-015506 Brassica oleracea 39.36 7.00e-14 73.90
IUUC-Bra-017998 Brassica rapa 39.60 7.00e-14 73.90
IUUC-Cja-019050 Callithrix jacchus 70.69 0.00e+00 2133.00
IUUC-Cfa-021015 Canis familiaris 70.47 0.00e+00 2051.00
IUUC-Cpo-022340 Cavia porcellus 70.40 0.00e+00 2022.00
IUUC-Csa-023441 Chlorocebus sabaeus 71.08 0.00e+00 2134.00
IUUC-Cho-024823 Choloepus hoffmanni 80.10 0.00e+00 1404.00
IUUC-Cne-026851 Cryptococcus neoformans 28.88 1.00e-109 391.00
IUUC-Dre-027707 Danio rerio 60.95 0.00e+00 1774.00
IUUC-Dno-028978 Dasypus novemcinctus 70.78 0.00e+00 2117.00
IUUC-Dor-030854 Dipodomys ordii 60.54 0.00e+00 1365.00
IUUC-Ete-032760 Echinops telfairi 69.00 0.00e+00 1413.00
IUUC-Eca-034370 Equus caballus 70.26 0.00e+00 2012.00
IUUC-Eeu-035012 Erinaceus europaeus 58.62 0.00e+00 1440.00
IUUC-Fca-035494 Felis catus 70.56 0.00e+00 2041.00
IUUC-Fal-037631 Ficedula albicollis 70.17 0.00e+00 2056.00
IUUC-Gmo-039522 Gadus morhua 65.36 0.00e+00 1527.00
IUUC-Gga-040802 Gallus gallus 71.27 0.00e+00 2101.00
IUUC-Gac-041563 Gasterosteus aculeatus 60.39 0.00e+00 1788.00
IUUC-Gma-044327 Glycine max 40.55 1.00e-95 345.00
IUUC-Ggo-044856 Gorilla gorilla 57.01 0.00e+00 1531.00
IUUC-Hsa-045888 Homo sapiens 69.36 0.00e+00 2132.00
IUUC-Hvu-047583 Hordeum vulgare 41.03 2.00e-14 74.30
IUUC-Itr-048297 Ictidomys tridecemlineatus 70.88 0.00e+00 2112.00
IUUC-Lch-050483 Latimeria chalumnae 61.81 0.00e+00 1854.00
IUUC-Loc-052550 Lepisosteus oculatus 67.24 0.00e+00 1949.00
IUUC-Laf-053761 Loxodonta africana 69.86 0.00e+00 2021.00
IUUC-Mcc-055505 Macaca mulatta 69.49 0.00e+00 2136.00
IUUC-Mga-059358 Meleagris gallopavo 72.94 0.00e+00 1980.00
IUUC-Mmr-060863 Microcebus murinus 70.44 0.00e+00 2105.00
IUUC-Mdo-061957 Monodelphis domestica 70.71 0.00e+00 2169.00
IUUC-Mmu-063944 Mus musculus 70.35 0.00e+00 2090.00
IUUC-Mpu-066719 Mustela putorius furo 69.89 0.00e+00 2103.00
IUUC-Mlu-068086 Myotis lucifugus 69.69 0.00e+00 1982.00
IUUC-Nle-069256 Nomascus leucogenys 68.33 0.00e+00 2086.00
IUUC-Ont-071701 Oreochromis niloticus 60.49 0.00e+00 1832.00
IUUC-Oan-073568 Ornithorhynchus anatinus 71.22 0.00e+00 2188.00
IUUC-Ocu-073961 Oryctolagus cuniculus 70.36 0.00e+00 2083.00
IUUC-Oba-075388 Oryza barthii 30.96 1.00e-79 291.00
IUUC-Ogl-077886 Oryza glaberrima 38.24 7.00e-16 79.30
IUUC-Ogu-079040 Oryza glumaepatula 30.78 4.00e-79 290.00
IUUC-Olo-080668 Oryza longistaminata 37.86 2.00e-15 79.00
IUUC-Ome-081764 Oryza meridionalis 33.52 2.00e-97 351.00
IUUC-Oni-083012 Oryza nivara 30.78 4.00e-79 290.00
IUUC-Oru-084630 Oryza rufipogon 31.06 6.00e-80 293.00
IUUC-Osa-085487 Oryza sativa 38.24 7.00e-16 79.30
IUUC-Ola-086448 Oryzias latipes 58.78 0.00e+00 1709.00
IUUC-Oga-088501 Otolemur garnettii 65.63 0.00e+00 1700.00
IUUC-Oar-090162 Ovis aries 70.08 0.00e+00 2031.00
IUUC-Ptr-090816 Pan troglodytes 69.36 0.00e+00 2134.00
IUUC-Pan-092764 Papio anubis 71.14 0.00e+00 2132.00
IUUC-Psi-093918 Pelodiscus sinensis 67.28 0.00e+00 1828.00
IUUC-Ppa-095839 Physcomitrella patens 55.17 8.00e-16 80.50
IUUC-Pfo-096777 Poecilia formosa 61.22 0.00e+00 1820.00
IUUC-Pab-097854 Pongo abelii 72.88 0.00e+00 1720.00
IUUC-Pca-100241 Procavia capensis 63.58 0.00e+00 1254.00
IUUC-Ppe-101504 Prunus persica 32.01 1.00e-98 355.00
IUUC-Pva-103035 Pteropus vampyrus 70.05 0.00e+00 1794.00
IUUC-Rno-105574 Rattus norvegicus 69.69 0.00e+00 2044.00
IUUC-Sce-106207 Saccharomyces cerevisiae 35.59 3.00e-75 276.00
IUUC-Sit-110534 Setaria italica 33.15 3.00e-105 377.00
IUUC-Stu-112523 Solanum tuberosum 47.92 4.00e-10 58.50
IUUC-Sar-113477 Sorex araneus 71.65 0.00e+00 1890.00
IUUC-Ssc-116132 Sus scrofa 74.65 0.00e+00 1923.00
IUUC-Tgu-117452 Taeniopygia guttata 71.22 0.00e+00 2056.00
IUUC-Tru-117561 Takifugu rubripes 57.96 0.00e+00 1711.00
IUUC-Tsy-119271 Tarsius syrichta 67.71 0.00e+00 1603.00
IUUC-Tni-119650 Tetraodon nigroviridis 60.37 0.00e+00 1756.00
IUUC-Tca-121478 Theobroma cacao 33.00 7.00e-104 372.00
IUUC-Tur-126632 Triticum urartu 41.01 4.00e-94 340.00
IUUC-Tme-127087 Tuber melanosporum 35.82 1.00e-116 414.00
IUUC-Tbe-127890 Tupaia belangeri 59.49 0.00e+00 1018.00
IUUC-Ttr-128546 Tursiops truncatus 71.87 0.00e+00 1618.00
IUUC-Uma-129590 Ustilago maydis 28.46 4.00e-122 433.00
IUUC-Vpa-130432 Vicugna pacos 68.71 0.00e+00 1196.00
IUUC-Xma-133571 Xiphophorus maculatus 59.61 0.00e+00 1757.00
Created Date 25-Jun-2017

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