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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Mmu-063672
UUCD1 version UUC-MuM-01047
Ensembl Protein ID ENSMUSP00000108009.1
UniProt Accession E9QAS5; E9QAS5_MOUSE
Genbank Protein ID ENSMUSP00000108009
Protein Name Chromodomain-helicase-DNA-binding protein 4
Genbank Nucleotide ID AC134529
Gene Name Chd4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000063870.12 ENSMUST00000112392.7 ENSMUSP00000108011.1
ENSMUSG00000063870.12 ENSMUST00000056889.14 ENSMUSP00000060054.8
ENSMUSG00000063870.12 ENSMUST00000112390.7 ENSMUSP00000108009.1
ENSMUSG00000063870.12 ENSMUST00000124317.1 ENSMUSP00000120704.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
circBasemiRTarBasemicroRNATRANSFAC
RepTarRAID2
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
PhosphositePlusPHOSIDAmUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 5.60e-16 59.6 450 494
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e w Cp+C+
   Q: 450  EFCRVCKDGGE----LLCCDTCPSSYHIHCLNPP-LPEIPNGE-WLCPRCT 494
           58*********....*******************.*******8.******6 PP
   
Organism Mus musculus
Protein Sequence
(Fasta)
MASGLGSPSP CSAGSEEEDM DALLNNSLPP PHPENEEDPD EDLSEAETPK LKKKKKPKKP 60
RDPKIPKSKR QKKERLLLCR QLGDSSGEGP EFVEEEEEVA LRSDSEGSDY TPGKKKKKKL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Mmu-063672|E3,PHD|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTGGCCAATG GTTGCCTGAG CGACGAGGGG GCGGGGGTTG CCCGGGAGAC CTAAAGAGGA 60
GGGTGGCGGT AGTGGAGGGG GGGGTTGGAG TTGGTTGAGG TTATTATGGG CTGTCCGTGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Mmu-063672|E3,PHD|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N
SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD
Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001361 Ailuropoda melanoleuca 95.77 0.00e+00 2959.00
IUUC-Apl-004175 Anas platyrhynchos 91.66 0.00e+00 2724.00
IUUC-Aca-004774 Anolis carolinensis 89.28 0.00e+00 2797.00
IUUC-Ame-011098 Astyanax mexicanus 81.33 0.00e+00 2378.00
IUUC-Bta-013220 Bos taurus 97.49 0.00e+00 2911.00
IUUC-Cel-018683 Caenorhabditis elegans 57.61 0.00e+00 1275.00
IUUC-Cja-019510 Callithrix jacchus 90.54 0.00e+00 2610.00
IUUC-Cfa-020422 Canis familiaris 98.12 0.00e+00 2933.00
IUUC-Cpo-021704 Cavia porcellus 98.04 0.00e+00 2895.00
IUUC-Csa-023625 Chlorocebus sabaeus 98.06 0.00e+00 2926.00
IUUC-Cho-024361 Choloepus hoffmanni 91.09 0.00e+00 1458.00
IUUC-Dre-027505 Danio rerio 79.01 0.00e+00 2456.00
IUUC-Dno-029656 Dasypus novemcinctus 97.54 0.00e+00 2904.00
IUUC-Dor-030354 Dipodomys ordii 96.00 0.00e+00 1899.00
IUUC-Eca-034112 Equus caballus 97.85 0.00e+00 2936.00
IUUC-Fca-036056 Felis catus 98.22 0.00e+00 2931.00
IUUC-Fal-037312 Ficedula albicollis 96.29 0.00e+00 2318.00
IUUC-Gga-040216 Gallus gallus 91.91 0.00e+00 2815.00
IUUC-Gac-042478 Gasterosteus aculeatus 77.59 0.00e+00 2016.00
IUUC-Ggo-044428 Gorilla gorilla 88.29 0.00e+00 2600.00
IUUC-Hsa-045908 Homo sapiens 95.92 0.00e+00 2936.00
IUUC-Itr-048002 Ictidomys tridecemlineatus 98.11 0.00e+00 2933.00
IUUC-Lch-049948 Latimeria chalumnae 78.03 0.00e+00 1915.00
IUUC-Loc-052144 Lepisosteus oculatus 85.18 0.00e+00 2114.00
IUUC-Mcc-055773 Macaca mulatta 96.18 0.00e+00 2918.00
IUUC-Mga-059633 Meleagris gallopavo 92.04 0.00e+00 2820.00
IUUC-Mmr-060886 Microcebus murinus 96.39 0.00e+00 2937.00
IUUC-Mdo-062872 Monodelphis domestica 94.88 0.00e+00 2598.00
IUUC-Mpu-066692 Mustela putorius furo 98.17 0.00e+00 2931.00
IUUC-Mlu-067785 Myotis lucifugus 98.12 0.00e+00 2924.00
IUUC-Nle-070039 Nomascus leucogenys 96.04 0.00e+00 2873.00
IUUC-Ont-072418 Oreochromis niloticus 82.57 0.00e+00 2117.00
IUUC-Ocu-074177 Oryctolagus cuniculus 95.18 0.00e+00 2925.00
IUUC-Ola-086880 Oryzias latipes 81.38 0.00e+00 2169.00
IUUC-Oga-088970 Otolemur garnettii 96.34 0.00e+00 2933.00
IUUC-Oar-090422 Ovis aries 97.83 0.00e+00 2865.00
IUUC-Pan-092441 Papio anubis 97.96 0.00e+00 2926.00
IUUC-Psi-093530 Pelodiscus sinensis 90.88 0.00e+00 2772.00
IUUC-Ppa-095213 Physcomitrella patens 42.04 0.00e+00 724.00
IUUC-Pfo-097530 Poecilia formosa 82.56 0.00e+00 2108.00
IUUC-Pab-097959 Pongo abelii 95.71 0.00e+00 2850.00
IUUC-Pva-103186 Pteropus vampyrus 96.36 0.00e+00 2849.00
IUUC-Rno-105692 Rattus norvegicus 98.12 0.00e+00 2909.00
IUUC-Ssc-115295 Sus scrofa 97.91 0.00e+00 2902.00
IUUC-Tgu-117484 Taeniopygia guttata 90.09 0.00e+00 2806.00
IUUC-Tru-118745 Takifugu rubripes 78.15 0.00e+00 2504.00
IUUC-Tsy-119261 Tarsius syrichta 85.67 0.00e+00 1998.00
IUUC-Tni-120764 Tetraodon nigroviridis 79.86 0.00e+00 2391.00
IUUC-Ttr-128478 Tursiops truncatus 92.13 0.00e+00 2699.00
Created Date 25-Jun-2017

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