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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-106062
UUCD1 version UUC-RaN-00580
Ensembl Protein ID ENSRNOP00000053423.1
UniProt Accession F1LZ35; F1LZ35_RAT
Genbank Protein ID ENSRNOP00000053423
Protein Name WD repeat domain 88
Genbank Nucleotide ID AC114383
Gene Name Wdr88
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000037393.2 ENSRNOT00000056583.1 ENSRNOP00000053423.1
Annotation
DNA & RNA Element
RAID2
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.80e-42 140.5 199 232
UBD/Beta-Prp 3.50e-54 184.4 66 238
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
    +H+ s+t+++f +d ++s s D++ik+WD+++
   Q: 199 QHQRSITSCCFdPDsQKVASVSMDKSIKIWDVTS 232
    59**********999****************986 PP
   


   UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk.ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleet 132
    ++l gh+++v+++ f d+ l+++s D t+k+wd ++g+ + ++ + ++ vl +s+ +++ ++v+ s d+t+r wd+etgq l
   Q: 66 YKTLTGHDQTVSSCHFCMDDTRLLSSSYDCTVKLWDAEDGTVICDFEpRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLL--W 152
    689999********99999999************************9888999********99*********************99..5 PP
   S: 133 lsghdgvvncvvvhpdgnllvsGsl.DrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrt 217
    + hd +v c +++p+g+++ s+ + +r + l d ++ + + +++ +h++s++s fd++++ ++s+s+d+++k+wd+ + ++ t
   Q: 153 KVRHDTFVVCCKFSPNGKYVLSALDvNRGIYLMDPENITSVIHMKAQHQRSITSCCFDPDSQKVASVSMDKSIKIWDVTSRATLFT 238
    999************99999999754899999999999999999999******************************998776655 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
RVPWATLMRA LGRFKLYLPH IRRYYNLSSR DPLALDKDFL LPREKHLKAT VQKSWGNQQP 60
LSKIPYKTLT GHDQTVSSCH FCMDDTRLLS SSYDCTVKLW DAEDGTVICD FEPRPKAPVL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-106062|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGGGTGCCAT GGGCCACCCT GATGAGAGCA CTGGGTCGTT TCAAGCTGTA TCTCCCACAT 60
ATCCGTCGGT ATTATAATCT GTCCTCCCGT GACCCCCTGG CCTTAGACAA GGATTTTCTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-106062|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR018391--PQQ_beta_propeller_repeat
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00564--PQQ
SM00320--WD40

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001328 Ailuropoda melanoleuca 71.52 3.00e-140 491.00
IUUC-Apl-003571 Anas platyrhynchos 53.07 1.00e-116 412.00
IUUC-Aca-005232 Anolis carolinensis 44.49 7.00e-73 266.00
IUUC-Ame-011833 Astyanax mexicanus 51.56 2.00e-56 211.00
IUUC-Bta-013562 Bos taurus 66.26 3.00e-160 558.00
IUUC-Cja-019202 Callithrix jacchus 68.67 4.00e-170 590.00
IUUC-Cfa-021095 Canis familiaris 63.35 4.00e-160 557.00
IUUC-Cpo-022170 Cavia porcellus 68.86 5.00e-170 590.00
IUUC-Csa-024218 Chlorocebus sabaeus 69.40 9.00e-175 606.00
IUUC-Cho-024561 Choloepus hoffmanni 70.19 1.00e-113 402.00
IUUC-Dno-029722 Dasypus novemcinctus 69.77 4.00e-145 507.00
IUUC-Dor-030464 Dipodomys ordii 63.98 8.00e-127 446.00
IUUC-Ete-032931 Echinops telfairi 56.65 5.00e-102 364.00
IUUC-Eca-034428 Equus caballus 71.47 9.00e-160 556.00
IUUC-Eeu-034568 Erinaceus europaeus 58.04 6.00e-108 384.00
IUUC-Fca-035707 Felis catus 64.56 3.00e-156 545.00
IUUC-Gmo-039646 Gadus morhua 41.80 5.00e-69 254.00
IUUC-Gga-040710 Gallus gallus 51.58 3.00e-108 384.00
IUUC-Ggo-044611 Gorilla gorilla 44.34 1.00e-87 316.00
IUUC-Hsa-046138 Homo sapiens 69.40 7.00e-173 600.00
IUUC-Itr-048283 Ictidomys tridecemlineatus 63.46 2.00e-156 545.00
IUUC-Lch-050329 Latimeria chalumnae 49.43 2.00e-105 375.00
IUUC-Loc-052876 Lepisosteus oculatus 41.40 9.00e-34 136.00
IUUC-Laf-053777 Loxodonta africana 67.71 7.00e-169 586.00
IUUC-Mcc-055771 Macaca mulatta 69.01 7.00e-174 603.00
IUUC-Meu-056584 Macropus eugenii 46.15 1.00e-79 289.00
IUUC-Mga-059818 Meleagris gallopavo 52.36 4.00e-118 417.00
IUUC-Mmr-060639 Microcebus murinus 68.59 6.00e-149 520.00
IUUC-Mdo-062321 Monodelphis domestica 52.36 4.00e-124 437.00
IUUC-Mpu-066849 Mustela putorius furo 65.44 6.00e-159 553.00
IUUC-Mlu-067238 Myotis lucifugus 61.84 2.00e-153 535.00
IUUC-Ont-071230 Oreochromis niloticus 39.78 2.00e-73 268.00
IUUC-Oan-072698 Ornithorhynchus anatinus 58.97 2.00e-133 468.00
IUUC-Ocu-074219 Oryctolagus cuniculus 68.90 3.00e-158 551.00
IUUC-Oin-079375 Oryza indica 26.04 1.00e-20 95.50
IUUC-Oga-087913 Otolemur garnettii 61.26 3.00e-157 548.00
IUUC-Oar-089977 Ovis aries 65.62 7.00e-159 553.00
IUUC-Ptr-090876 Pan troglodytes 69.88 7.00e-175 606.00
IUUC-Pan-091936 Papio anubis 75.00 4.00e-102 363.00
IUUC-Psi-093015 Pelodiscus sinensis 48.40 4.00e-70 257.00
IUUC-Pma-094552 Petromyzon marinus 31.64 3.00e-30 124.00
IUUC-Pfo-096240 Poecilia formosa 40.00 2.00e-67 251.00
IUUC-Pab-097983 Pongo abelii 62.74 2.00e-148 518.00
IUUC-Pca-100752 Procavia capensis 55.05 4.00e-128 451.00
IUUC-Pva-102199 Pteropus vampyrus 62.26 7.00e-153 533.00
IUUC-Sar-113167 Sorex araneus 47.14 1.00e-32 133.00
IUUC-Ssc-116089 Sus scrofa 65.67 1.00e-156 545.00
IUUC-Tbe-127860 Tupaia belangeri 61.06 6.00e-152 530.00
IUUC-Ttr-129152 Tursiops truncatus 65.28 1.00e-150 526.00
IUUC-Vpa-130745 Vicugna pacos 61.72 3.00e-151 528.00
Created Date 25-Jun-2017

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