iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105375

Ensembl Protein ID

ENSRNOP00000068730.1

UniProt Accession

G3V7G4; G3V7G4_RAT

Genbank Protein ID

EDL78439.1; EDL78440.1; EDL78442.1; EDL78443.1; EDL78444.1

Protein Name

Josephin domain containing 3, isoform CRA_b; TATA box-binding protein-associated factor RNA polymerase I subunit D

Genbank Nucleotide ID

AC105648; CH473993; CH473993; CH473993; CH473993

Gene Name

Taf1d; Josd3; rCG_31849

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000010921.6	ENSRNOT00000078161.1	ENSRNOP00000068730.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/Other	58.37	8.00e-49	191.00	IUUC-Hsa-046930

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAQSEVDSVD CVTSDRDGDI GNQSDDSSNS SLFKTQCVPS PTRKQRIPTV KCVPSLASVE 60
TDSSSDSSLE PRPLTLKAIF ERFKKKKRKK RKKRKYKPKL RRQGRPSGTR NIRRSQIDAK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGTAGGCC TAGGAGCAGC GGAGCGGGCC AGGCTCCGGC CTTCCGCAGA CCGCGCGAGG 60
CTCGGAGTCG CTGTTGGGAG AGGCCGAGGT GTTCTGGGCC TGGAAGGCGT TTTTAGTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR027976--TAF1D

Pfam

PF15333--TAF1D

Gene Ontology

GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0005668--C:RNA polymerase transcription factor SL1 complex
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001853	Ailuropoda melanoleuca	64.71	4.00e-49	187.00
IUUC-Apl-003575	Anas platyrhynchos	46.36	2.00e-27	115.00
IUUC-Aca-004568	Anolis carolinensis	47.76	6.00e-31	127.00
IUUC-Ani-009409	Aspergillus nidulans	22.06	2.00e+00	27.30
IUUC-Bta-013078	Bos taurus	57.38	2.00e-42	166.00
IUUC-Cja-019808	Callithrix jacchus	57.04	5.00e-51	194.00
IUUC-Cfa-020525	Canis familiaris	63.13	5.00e-47	181.00
IUUC-Cpo-021896	Cavia porcellus	63.22	8.00e-53	200.00
IUUC-Csa-024108	Chlorocebus sabaeus	57.19	8.00e-54	203.00
IUUC-Cho-024326	Choloepus hoffmanni	58.09	2.00e-50	192.00
IUUC-Dno-029104	Dasypus novemcinctus	56.28	1.00e-58	219.00
IUUC-Dor-030151	Dipodomys ordii	63.13	3.00e-55	207.00
IUUC-Ete-033189	Echinops telfairi	60.10	4.00e-56	211.00
IUUC-Eca-034238	Equus caballus	62.10	2.00e-61	228.00
IUUC-Fca-035711	Felis catus	62.14	2.00e-51	195.00
IUUC-Fal-037067	Ficedula albicollis	49.04	4.00e-24	103.00
IUUC-Gga-040782	Gallus gallus	45.31	4.00e-30	125.00
IUUC-Ggo-045155	Gorilla gorilla	55.04	2.00e-55	209.00
IUUC-Hsa-046930	Homo sapiens	55.04	8.00e-56	210.00
IUUC-Loc-052935	Lepisosteus oculatus	34.23	5.00e-08	53.10
IUUC-Laf-054040	Loxodonta africana	62.33	1.00e-59	223.00
IUUC-Mga-059429	Meleagris gallopavo	41.05	2.00e-30	126.00
IUUC-Mmr-061505	Microcebus murinus	53.87	3.00e-59	221.00
IUUC-Mdo-062193	Monodelphis domestica	50.69	3.00e-31	128.00
IUUC-Mmu-064127	Mus musculus	77.66	1.00e-103	369.00
IUUC-Mpu-065682	Mustela putorius furo	63.18	5.00e-47	181.00
IUUC-Mlu-067425	Myotis lucifugus	67.21	2.00e-66	245.00
IUUC-Nle-069897	Nomascus leucogenys	57.55	4.00e-55	207.00
IUUC-Opr-071021	Ochotona princeps	55.46	5.00e-52	197.00
IUUC-Oan-072853	Ornithorhynchus anatinus	50.71	3.00e-34	140.00
IUUC-Ocu-074088	Oryctolagus cuniculus	55.68	4.00e-52	197.00
IUUC-Oga-089058	Otolemur garnettii	55.47	8.00e-57	213.00
IUUC-Oar-089404	Ovis aries	58.70	4.00e-44	171.00
IUUC-Ptr-091491	Pan troglodytes	55.60	4.00e-57	214.00
IUUC-Pan-092706	Papio anubis	57.19	9.00e-54	203.00
IUUC-Psi-093986	Pelodiscus sinensis	48.28	5.00e-28	118.00
IUUC-Pab-097567	Pongo abelii	56.83	1.00e-55	209.00
IUUC-Pva-103062	Pteropus vampyrus	65.00	1.00e-53	202.00
IUUC-Sha-106880	Sarcophilus harrisii	50.44	2.00e-42	165.00
IUUC-Ssc-115335	Sus scrofa	45.13	1.00e-18	84.70
IUUC-Tgu-117094	Taeniopygia guttata	50.00	1.00e-24	105.00
IUUC-Tsy-119189	Tarsius syrichta	60.66	1.00e-50	192.00
IUUC-Tbe-128047	Tupaia belangeri	56.38	7.00e-58	216.00
IUUC-Ttr-128715	Tursiops truncatus	64.34	1.00e-63	236.00
IUUC-Vpa-130195	Vicugna pacos	56.32	2.00e-64	239.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence