iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/ATG8	2.20e-47	160.4	15	118

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/ATG8

   S: 1    krkeevekirdkfpdkiPvivekakkekipeldkkkylvPsdltvgqlvkiirkrlqlraedalfllvnnslvsvsatlaeiyeeekdedgflyvaya 98
           krk+e+ +ir+k+pd+iPviveka+k+++p++dkkkylvPsdltvgq+v++irkr++l ae+a+f++v+n+l+++   ++++ye++kdedgfly++y+
   Q: 15   KRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYS 112
           699*********************************************************************************************** PP
   S: 99   seetfG 104
           +e+tfG
   Q: 113  GENTFG 118
           *****9 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton.

Protein Sequence
(Fasta)

MNKGSIFKMD NDFEKRKAEA GRIREKYPDR IPVIVEKAEK SEVPNIDKKK YLVPSDLTVG 60
QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG ELMSSVYEDK KDEDGFLYIT YSGENTFGAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCCAATCAT AGACGAAAAG AAAAAGGTTC CTTTTTTTGA CTTTGTATCC GTAGATCATC 60
TTCTTCTTCT TCTTCCAGAG TTTTATCCTT ATCCGTTCCA TCAAATTCTC TCTCTGTAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0493--Microtubule
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0833--Ubl conjugation pathway
KW-0926--Vacuole

Interpro

IPR004241--Atg8-like
IPR029071--Ubiquitin-rel_dom

Pfam

PF02991--Atg8

Gene Ontology

GO:0005776--C:autophagosome
GO:0000421--C:autophagosome membrane
GO:0005737--C:cytoplasm
GO:0031410--C:cytoplasmic vesicle
GO:0016020--C:membrane
GO:0005874--C:microtubule
GO:0006914--P:autophagy
GO:0009267--P:cellular response to starvation
GO:0015031--P:protein transport

KEGG

ath:AT2G45170

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005408	Arabidopsis lyrata	99.18	4.00e-66	242.00
IUUC-Bol-015412	Brassica oleracea	93.44	4.00e-63	231.00
IUUC-Bra-016756	Brassica rapa	93.44	1.00e-63	233.00
IUUC-Cel-018200	Caenorhabditis elegans	61.06	2.00e-37	146.00
IUUC-Cin-025297	Ciona intestinalis	57.52	1.00e-36	144.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence