iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099385

Ensembl Protein ID

POPTR_0002s07740.1

UniProt Accession

B9GTY7; B9GTY7_POPTR

Genbank Protein ID

EEE81485.1

Protein Name

PHD finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_754527; POPTR_0002s07740g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s07740	POPTR_0002s07740.1	POPTR_0002s07740.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	5.20e-13	50.1	485	530

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 4    ClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           C vC    +d+ ++v C+ C++++H  C+ ++   ++p+ + w+C++C+
   Q: 485  CRVCITDRDDD-KIVLCDGCDHAYHLYCMIPP-RISVPKGK-WFCRQCD 530
           *****999987.6*******************.*******7.******7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVGEEGMGNG EGTEEIVQPL KIEAMDNGFG NDGVEASSGS SEGFRTYKRR RNTRSSLDGK 60
GQQDGKSFME AASRLADQTI KNDSQDHLRE NHASLNHSSD VSQRQWRKFV LDYMYQSSSN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACAAATCCA ACTCCCTTCA TCGTCTTCTT CGTTTTCCTG CTCTCAGATA ATTAGGGTTT 60
CGGTTTTCCA AAGACTAAAA AAATTCTCTA CTCGGTCTGG TACGCTTTCT TTGCACTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0002s07740g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000842	Aegilops tauschii	32.59	9.00e-59	220.00
IUUC-Bdi-014741	Brachypodium distachyon	31.17	2.00e-62	233.00
IUUC-Bol-016121	Brassica oleracea	40.59	4.00e-84	304.00
IUUC-Bra-018006	Brassica rapa	41.27	3.00e-84	305.00
IUUC-Cin-025168	Ciona intestinalis	37.36	4.00e-12	64.30
IUUC-Cne-026851	Cryptococcus neoformans	48.94	6.00e-10	60.50
IUUC-Dme-032134	Drosophila melanogaster	37.50	3.00e-13	69.70
IUUC-Gac-041753	Gasterosteus aculeatus	39.18	1.00e-13	71.20
IUUC-Gma-042695	Glycine max	46.32	6.00e-142	497.00
IUUC-Hvu-047708	Hordeum vulgare	31.19	5.00e-62	231.00
IUUC-Lpe-051590	Leersia perrieri	33.33	3.00e-55	209.00
IUUC-Mtr-058493	Medicago truncatula	43.37	1.00e-123	436.00
IUUC-Mac-065162	Musa acuminata	32.40	2.00e-76	279.00
IUUC-Obr-076162	Oryza brachyantha	29.27	7.00e-61	227.00
IUUC-Ogl-077688	Oryza glaberrima	33.52	4.00e-45	174.00
IUUC-Psi-093918	Pelodiscus sinensis	52.17	2.00e-11	65.10
IUUC-Ppa-095839	Physcomitrella patens	51.72	2.00e-14	75.50
IUUC-Ppe-101709	Prunus persica	47.78	3.00e-150	525.00
IUUC-Sit-110064	Setaria italica	31.50	3.00e-65	242.00
IUUC-Sly-111296	Solanum lycopersicum	44.62	1.00e-119	423.00
IUUC-Stu-112523	Solanum tuberosum	50.35	2.00e-75	275.00
IUUC-Tca-120988	Theobroma cacao	52.36	3.00e-166	577.00
IUUC-Tae-125487	Triticum aestivum	30.87	1.00e-64	241.00
IUUC-Tur-126151	Triticum urartu	32.60	2.00e-58	219.00
IUUC-Ttr-129162	Tursiops truncatus	37.11	4.00e-14	75.90
IUUC-Vpa-130433	Vicugna pacos	47.06	8.00e-04	39.30
IUUC-Vvi-130984	Vitis vinifera	43.56	4.00e-141	494.00
IUUC-Zma-135753	Zea mays	33.58	4.00e-70	258.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence