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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-006899
UUCD1 version UUC-ArT-01419
Ensembl Protein ID AT1G03770.1
UniProt Accession Q0WX00; Q9ZW99; RNG1B_ARATH
Genbank Protein ID AAD10691.1; AEE27608.1; BAE98348.1
Protein Name Putative E3 ubiquitin-protein ligase RING1b; Polycomb complex protein RING1b; Protein RING1b; RING-type E3 ubiquitin transferase RING1b; Ring finger protein 5
Genbank Nucleotide ID AC003027; CP002684; AK226183
Gene Name RING1B; RF5; At1g03770; F21M11.30
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G03770 AT1G03770.3 AT1G03770.3
AT1G03770 AT1G03770.1 AT1G03770.1
AT1G03770 AT1G03770.2 AT1G03770.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 20933424
Classification
Family E-value Score Start End
E3 activity/RING/RING 0.00039 21.8 103 143
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
           C+iCl  +++   v+ C H f+++C+ + +        ++  CP+Cr
   Q: 103  CSICLGIIRKTRTVMECLHRFCRECIdKSM------RLGNNECPTCR 143
           ********77444588**********4444......889999****8 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     As part of the PRC1-like complex, repress class I KNOX gene expression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.
 As part of the PRC1-like complex, repress class I KNOX gene expression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.
Protein Sequence
(Fasta)
MPSLKSFSAA EEEDDQLGRN SEAERFNPEA VEKEEDPDKM DEKDESGDEE DDVKRDQVEA 60
EDEEALGEEE DSKERSQSSS AGELSESEYM VVDLADICKD VQCSICLGII RKTRTVMECL 120
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Protein Fasta Sequence


>IUUC-Ath-006899|E3,RING|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CTTCGTCCTC CTTTGTTCTC CTTTCTCTCT TTCCATCGGC ACCGAACCGA AACAACAAAG 60
AACGAGGAAA TACAAATAAG CCCACAAGAG AGAGACGTAG ATGGAGAGAT AAAGGTCAAA 120
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Nucleotide Fasta Sequence


>IUUC-Ath-006899|E3,RING|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2
SMART

SM00184--RING
Gene Ontology

GO:0035102--C:PRC1 complex
GO:0016740--F:transferase activity
GO:0008270--F:zinc ion binding
GO:0001709--P:cell fate determination
GO:0016569--P:covalent chromatin modification
GO:0010076--P:maintenance of floral meristem identity
GO:0010077--P:maintenance of inflorescence meristem identity
GO:0010492--P:maintenance of shoot apical meristem identity
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0016567--P:protein ubiquitination
GO:0006351--P:transcription, DNA-templated
KEGG ath:AT1G03770
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000516 Aegilops tauschii 43.31 2.00e-53 202.00
IUUC-Aml-001250 Ailuropoda melanoleuca 48.28 1.00e-23 102.00
IUUC-Apl-003587 Anas platyrhynchos 48.28 1.00e-23 102.00
IUUC-Aca-004928 Anolis carolinensis 48.28 1.00e-23 102.00
IUUC-Aly-005766 Arabidopsis lyrata 88.79 0.00e+00 660.00
IUUC-Ame-010622 Astyanax mexicanus 51.95 6.00e-23 100.00
IUUC-Bta-013553 Bos taurus 48.28 1.00e-23 102.00
IUUC-Bdi-014202 Brachypodium distachyon 38.85 3.00e-57 215.00
IUUC-Cel-018573 Caenorhabditis elegans 38.57 9.00e-12 66.60
IUUC-Cja-019093 Callithrix jacchus 48.28 1.00e-23 102.00
IUUC-Cfa-020681 Canis familiaris 48.28 1.00e-23 102.00
IUUC-Cpo-021402 Cavia porcellus 39.84 1.00e-23 103.00
IUUC-Csa-024231 Chlorocebus sabaeus 48.28 2.00e-23 102.00
IUUC-Cho-024843 Choloepus hoffmanni 50.65 4.00e-20 91.70
IUUC-Csv-026314 Ciona savignyi 46.73 3.00e-25 108.00
IUUC-Dre-027685 Danio rerio 51.95 6.00e-23 100.00
IUUC-Dno-029993 Dasypus novemcinctus 48.28 1.00e-23 102.00
IUUC-Dor-030457 Dipodomys ordii 54.69 3.00e-18 85.50
IUUC-Dme-031721 Drosophila melanogaster 45.56 8.00e-22 97.40
IUUC-Ete-032564 Echinops telfairi 56.10 4.00e-10 58.20
IUUC-Eca-033251 Equus caballus 48.28 1.00e-23 102.00
IUUC-Eeu-034951 Erinaceus europaeus 48.28 1.00e-23 102.00
IUUC-Fca-036240 Felis catus 48.28 1.00e-23 102.00
IUUC-Fal-037376 Ficedula albicollis 48.28 2.00e-23 102.00
IUUC-Gmo-038879 Gadus morhua 49.35 2.00e-21 95.90
IUUC-Gga-041134 Gallus gallus 48.28 1.00e-23 102.00
IUUC-Gac-042589 Gasterosteus aculeatus 47.13 6.00e-23 100.00
IUUC-Ggo-044529 Gorilla gorilla 48.28 2.00e-23 102.00
IUUC-Hsa-046100 Homo sapiens 48.28 2.00e-23 102.00
IUUC-Hvu-047152 Hordeum vulgare 44.58 4.00e-61 228.00
IUUC-Itr-047891 Ictidomys tridecemlineatus 48.28 1.00e-23 102.00
IUUC-Lch-049494 Latimeria chalumnae 49.43 2.00e-23 102.00
IUUC-Lpe-050923 Leersia perrieri 36.57 1.00e-57 216.00
IUUC-Loc-052544 Lepisosteus oculatus 51.95 9.00e-23 100.00
IUUC-Laf-053675 Loxodonta africana 48.28 2.00e-23 102.00
IUUC-Mcc-055685 Macaca mulatta 48.28 1.00e-23 103.00
IUUC-Meu-056000 Macropus eugenii 45.98 3.00e-22 98.60
IUUC-Mtr-058234 Medicago truncatula 44.50 2.00e-72 266.00
IUUC-Mga-059354 Meleagris gallopavo 48.28 1.00e-23 102.00
IUUC-Mmr-060809 Microcebus murinus 48.28 1.00e-23 102.00
IUUC-Mdo-062206 Monodelphis domestica 48.28 1.00e-23 102.00
IUUC-Mmu-063715 Mus musculus 48.28 1.00e-23 102.00
IUUC-Mac-064893 Musa acuminata 49.11 1.00e-77 282.00
IUUC-Mpu-066460 Mustela putorius furo 48.28 1.00e-23 102.00
IUUC-Mlu-067743 Myotis lucifugus 48.28 1.00e-23 102.00
IUUC-Nle-069512 Nomascus leucogenys 48.28 2.00e-23 102.00
IUUC-Ont-072541 Oreochromis niloticus 47.13 6.00e-23 100.00
IUUC-Oan-073454 Ornithorhynchus anatinus 48.28 1.00e-23 102.00
IUUC-Ocu-073981 Oryctolagus cuniculus 48.28 1.00e-23 102.00
IUUC-Oba-075605 Oryza barthii 72.87 4.00e-50 192.00
IUUC-Obr-076282 Oryza brachyantha 43.96 2.00e-62 232.00
IUUC-Ogl-077288 Oryza glaberrima 38.01 1.00e-65 243.00
IUUC-Ogu-078992 Oryza glumaepatula 72.87 4.00e-50 191.00
IUUC-Oin-079939 Oryza indica 38.58 2.00e-66 245.00
IUUC-Olo-081069 Oryza longistaminata 68.22 4.00e-48 186.00
IUUC-Ome-081418 Oryza meridionalis 38.04 6.00e-63 234.00
IUUC-Oni-083103 Oryza nivara 44.30 3.00e-59 221.00
IUUC-Opu-083314 Oryza punctata 38.40 2.00e-63 236.00
IUUC-Oru-084356 Oryza rufipogon 72.87 5.00e-50 192.00
IUUC-Osa-085727 Oryza sativa 38.58 3.00e-66 245.00
IUUC-Ola-086937 Oryzias latipes 47.13 6.00e-23 100.00
IUUC-Oga-088881 Otolemur garnettii 50.65 6.00e-22 97.80
IUUC-Oar-089823 Ovis aries 48.28 2.00e-23 102.00
IUUC-Ptr-090557 Pan troglodytes 48.28 2.00e-23 102.00
IUUC-Pan-091950 Papio anubis 48.28 2.00e-23 102.00
IUUC-Psi-093349 Pelodiscus sinensis 48.28 1.00e-23 102.00
IUUC-Ppa-095164 Physcomitrella patens 74.76 1.00e-38 153.00
IUUC-Pfo-096056 Poecilia formosa 42.48 9.00e-18 84.00
IUUC-Pab-098392 Pongo abelii 48.28 2.00e-23 102.00
IUUC-Pop-100011 Populus trichocarpa 42.65 2.00e-77 282.00
IUUC-Pca-100649 Procavia capensis 50.65 7.00e-22 97.40
IUUC-Ppe-101894 Prunus persica 47.08 7.00e-54 203.00
IUUC-Pva-102498 Pteropus vampyrus 48.28 3.00e-23 101.00
IUUC-Pte-104339 Pyrenophora teres 27.47 3.00e-05 43.50
IUUC-Pyt-104522 Pyrenophora triticirepentis 26.47 2.00e-05 44.30
IUUC-Rno-105492 Rattus norvegicus 48.28 1.00e-23 102.00
IUUC-Sha-107645 Sarcophilus harrisii 48.28 1.00e-23 102.00
IUUC-Smo-108741 Selaginella moellendorffii 83.12 7.00e-36 140.00
IUUC-Sit-109707 Setaria italica 39.79 2.00e-70 258.00
IUUC-Sly-111537 Solanum lycopersicum 41.69 2.00e-61 229.00
IUUC-Stu-112805 Solanum tuberosum 40.40 3.00e-64 238.00
IUUC-Sar-113064 Sorex araneus 48.28 5.00e-23 100.00
IUUC-Sbi-114798 Sorghum bicolor 40.63 3.00e-65 241.00
IUUC-Ssc-115830 Sus scrofa 48.28 2.00e-23 102.00
IUUC-Tgu-116694 Taeniopygia guttata 48.28 1.00e-23 102.00
IUUC-Tru-117837 Takifugu rubripes 47.13 6.00e-23 100.00
IUUC-Tsy-119174 Tarsius syrichta 48.28 1.00e-23 102.00
IUUC-Tni-120389 Tetraodon nigroviridis 47.13 6.00e-23 100.00
IUUC-Tca-121428 Theobroma cacao 48.06 5.00e-83 300.00
IUUC-Tae-123769 Triticum aestivum 42.90 1.00e-63 236.00
IUUC-Tur-126796 Triticum urartu 40.71 2.00e-60 226.00
IUUC-Ttr-128796 Tursiops truncatus 48.28 1.00e-23 102.00
IUUC-Vpa-130691 Vicugna pacos 48.28 1.00e-23 102.00
IUUC-Vvi-131143 Vitis vinifera 50.38 8.00e-83 300.00
IUUC-Xtr-132022 Xenopus tropicalis 48.28 1.00e-23 102.00
IUUC-Xma-133801 Xiphophorus maculatus 42.48 1.00e-17 83.60
Created Date 25-Jun-2017

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