iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099774

Ensembl Protein ID

POPTR_0004s10000.1

UniProt Accession

B9H2Y8; B9H2Y8_POPTR

Genbank Protein ID

EEE86324.1

Protein Name

Ubiquitin family protein

Genbank Nucleotide ID

CM000340

Gene Name

XM_002305777.1; POPTR_0004s10000g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0004s10000	POPTR_0004s10000.1	POPTR_0004s10000.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	4.30e-22	78.6	15	56

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e  ++++ +MG   ++re++++aLraa+nn+e+A++yL++g
   Q: 15   LEATIQEILDMGggdWNRETVVRALRAAFNNPERAIDYLYSG 56
           5778***********************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MYGQAASNLV AGSNLEATIQ EILDMGGGDW NRETVVRALR AAFNNPERAI DYLYSGIPEQ 60
AEVPPVAQVV QGPASGNAVN PPALAPQPVV APNSGPNANP LDLFPQGHHS TGSNAGTGNL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGTTTAGAT ACAAACATGT ATGGGCAAGC AGCATCAAAT CTCGTTGCAG GAAGTAATTT 60
AGAAGCAACC ATTCAAGAGA TTCTTGATAT GGGTGGAGGA GACTGGAACC GAGAGACAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0004s10000g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cja-018772	Callithrix jacchus	37.80	3.00e-30	125.00
IUUC-Cpo-022145	Cavia porcellus	39.68	2.00e-32	133.00
IUUC-Ete-032583	Echinops telfairi	36.74	2.00e-20	92.40
IUUC-Ggr-040116	Gaeumannomyces graminis	50.81	4.00e-21	95.10
IUUC-Itr-048295	Ictidomys tridecemlineatus	38.58	4.00e-28	118.00
IUUC-Mga-060060	Meleagris gallopavo	29.63	4.00e-03	34.70
IUUC-Mlu-067999	Myotis lucifugus	37.60	1.00e-31	129.00
IUUC-Ocu-074831	Oryctolagus cuniculus	37.65	7.00e-30	124.00
IUUC-Pfo-097385	Poecilia formosa	36.40	5.00e-38	151.00
IUUC-Sar-112925	Sorex araneus	37.30	6.00e-28	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence