iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116329

Ensembl Protein ID

ENSSSCP00000005831.2

UniProt Accession

F1SP32; F1SP32_PIG

Genbank Protein ID

ENSSSCP00000005831

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU463059

Gene Name

RAD23B

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000005436.2	ENSSSCT00000005980.2	ENSSSCP00000005831.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.10e-19	69.3	190	227
ULD/UDP/UBQ/UBQ_PIM	2.70e-27	94.8	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e ++ ++++MG++re+++ aLra++nn+++AveyLl 
   Q: 190  YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 227
           5789********************************95 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           m++t+ktl++++f++++++++tv++lKeki++e+g   +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 1    MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGkdaFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
           99*************************************************************************997 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MQITLKTLQQ QTFKIDIDPE ETVKALKEKI ESEKGKDAFP VAGQKLIYAG KILNDDTALK 60
EYKIDEKNFV VVMVTKPKAV TTPAPATTQQ SNSATTTTVS SSTAPAAAQA PTPAPALAPT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCCACTGAC TACGCCTGCG CACGCGCGAT CCAGGACGCC GACATTCCAG AGCCGTAATC 60
CGCCCCGCCC CAATTCCGGG GCGGAGTTCT CGGCTGCGCC TGCGCACAGG CTCGCCGCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0071942--C:XPC complex
GO:0003684--F:damaged DNA binding
GO:0000715--P:nucleotide-excision repair, DNA damage recognition
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

KEGG

ssc:100153668

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	36.14	5.00e-32	132.00
IUUC-Aml-001195	Ailuropoda melanoleuca	96.19	8.00e-89	320.00
IUUC-Atr-003116	Amborella trichopoda	37.20	3.00e-31	129.00
IUUC-Apl-003371	Anas platyrhynchos	85.29	4.00e-89	321.00
IUUC-Aca-004599	Anolis carolinensis	79.58	8.00e-89	320.00
IUUC-Afu-008877	Aspergillus fumigatus	44.20	1.00e-18	87.00
IUUC-Ate-010458	Aspergillus terreus	40.32	7.00e-30	124.00
IUUC-Ame-011107	Astyanax mexicanus	67.96	2.00e-33	136.00
IUUC-Bta-012922	Bos taurus	95.59	5.00e-134	470.00
IUUC-Bdi-014253	Brachypodium distachyon	36.14	3.00e-34	139.00
IUUC-Bol-015354	Brassica oleracea	36.40	3.00e-37	148.00
IUUC-Bra-017582	Brassica rapa	36.03	6.00e-37	147.00
IUUC-Cja-018772	Callithrix jacchus	93.89	7.00e-139	486.00
IUUC-Cfa-020683	Canis familiaris	96.60	2.00e-95	342.00
IUUC-Cpo-022145	Cavia porcellus	89.00	2.00e-126	445.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	37.50	3.00e-30	125.00
IUUC-Csa-023714	Chlorocebus sabaeus	95.35	2.00e-148	518.00
IUUC-Cho-024814	Choloepus hoffmanni	72.98	6.00e-80	290.00
IUUC-Cin-025741	Ciona intestinalis	40.55	1.00e-34	140.00
IUUC-Cne-027056	Cryptococcus neoformans	48.72	1.00e-15	77.40
IUUC-Dre-028369	Danio rerio	72.43	8.00e-82	296.00
IUUC-Dno-029543	Dasypus novemcinctus	98.50	5.00e-103	367.00
IUUC-Dse-031336	Dothistroma septosporum	49.61	4.00e-17	82.40
IUUC-Ete-032583	Echinops telfairi	81.28	6.00e-65	241.00
IUUC-Eca-034243	Equus caballus	99.57	6.00e-99	353.00
IUUC-Eeu-034721	Erinaceus europaeus	89.10	9.00e-69	253.00
IUUC-Fca-035679	Felis catus	97.74	3.00e-101	361.00
IUUC-Fal-037148	Ficedula albicollis	81.93	7.00e-85	307.00
IUUC-Fox-037960	Fusarium oxysporum	43.28	1.00e-15	77.00
IUUC-Gmo-039080	Gadus morhua	62.92	2.00e-60	225.00
IUUC-Ggr-040116	Gaeumannomyces graminis	44.78	6.00e-16	78.20
IUUC-Gga-040544	Gallus gallus	74.42	1.00e-115	409.00
IUUC-Gma-043937	Glycine max	36.14	9.00e-40	157.00
IUUC-Ggo-045125	Gorilla gorilla	98.31	2.00e-95	342.00
IUUC-Hsa-046519	Homo sapiens	98.31	2.00e-95	342.00
IUUC-Hvu-047832	Hordeum vulgare	36.55	2.00e-34	139.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	91.93	7.00e-127	446.00
IUUC-Kpa-049314	Komagataella pastoris	36.67	6.00e-31	127.00
IUUC-Lch-050553	Latimeria chalumnae	66.67	5.00e-91	327.00
IUUC-Lpe-050801	Leersia perrieri	35.10	3.00e-34	138.00
IUUC-Loc-051748	Lepisosteus oculatus	74.47	2.00e-75	275.00
IUUC-Lma-053328	Leptosphaeria maculans	50.00	8.00e-14	67.80
IUUC-Laf-054293	Loxodonta africana	96.62	3.00e-98	351.00
IUUC-Mcc-055600	Macaca mulatta	98.12	4.00e-102	364.00
IUUC-Meu-056082	Macropus eugenii	64.00	5.00e-68	251.00
IUUC-Mor-057287	Magnaporthe oryzae	48.72	4.00e-16	78.60
IUUC-Mpo-057609	Magnaporthe poae	44.96	3.00e-15	75.50
IUUC-Mtr-058148	Medicago truncatula	36.68	5.00e-41	161.00
IUUC-Mla-058961	Melampsora laricipopulina	46.62	2.00e-25	110.00
IUUC-Mga-060060	Meleagris gallopavo	49.02	2.00e-15	76.30
IUUC-Mvi-060220	Microbotryum violaceum	43.61	2.00e-21	96.70
IUUC-Mmr-061159	Microcebus murinus	96.22	5.00e-94	337.00
IUUC-Mdo-061967	Monodelphis domestica	86.44	5.00e-86	310.00
IUUC-Mmu-063258	Mus musculus	90.77	1.00e-100	359.00
IUUC-Mpu-066389	Mustela putorius furo	96.61	4.00e-89	321.00
IUUC-Mlu-067999	Myotis lucifugus	95.13	4.00e-101	361.00
IUUC-Nfi-068390	Neosartorya fischeri	44.20	1.00e-18	87.00
IUUC-Ncr-068685	Neurospora crassa	44.78	2.00e-24	105.00
IUUC-Nle-069655	Nomascus leucogenys	94.87	3.00e-141	494.00
IUUC-Opr-070234	Ochotona princeps	88.89	9.00e-29	120.00
IUUC-Oan-073258	Ornithorhynchus anatinus	88.40	6.00e-52	196.00
IUUC-Ocu-074831	Oryctolagus cuniculus	94.38	2.00e-95	342.00
IUUC-Ogl-077067	Oryza glaberrima	31.55	6.00e-52	197.00
IUUC-Ola-086540	Oryzias latipes	65.18	3.00e-64	238.00
IUUC-Olu-087843	Ostreococcus lucimarinus	41.92	9.00e-38	150.00
IUUC-Oga-088023	Otolemur garnettii	87.89	2.00e-137	481.00
IUUC-Oar-089964	Ovis aries	96.37	9.00e-122	429.00
IUUC-Ptr-091165	Pan troglodytes	98.31	3.00e-95	341.00
IUUC-Pan-092009	Papio anubis	94.66	4.00e-141	493.00
IUUC-Psi-093477	Pelodiscus sinensis	84.50	4.00e-82	298.00
IUUC-Pno-095064	Phaeosphaeria nodorum	48.68	6.00e-15	75.10
IUUC-Ppa-095654	Physcomitrella patens	39.52	3.00e-36	145.00
IUUC-Pfo-097385	Poecilia formosa	64.32	3.00e-71	261.00
IUUC-Pab-097868	Pongo abelii	98.31	9.00e-95	339.00
IUUC-Pca-100652	Procavia capensis	95.50	7.00e-70	257.00
IUUC-Pva-102137	Pteropus vampyrus	99.58	8.00e-101	360.00
IUUC-Ptt-103717	Puccinia triticina	45.11	1.00e-24	107.00
IUUC-Pte-104303	Pyrenophora teres	50.00	2.00e-19	89.70
IUUC-Pyt-104580	Pyrenophora triticirepentis	49.64	2.00e-19	89.40
IUUC-Rno-104844	Rattus norvegicus	89.40	5.00e-141	493.00
IUUC-Sce-106214	Saccharomyces cerevisiae	62.50	1.00e-12	67.40
IUUC-Sha-107073	Sarcophilus harrisii	87.29	1.00e-86	313.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	41.43	2.00e-38	152.00
IUUC-Spo-108298	Schizosaccharomyces pombe	42.80	1.00e-38	153.00
IUUC-Sar-112925	Sorex araneus	89.85	4.00e-88	318.00
IUUC-Sre-114894	Sporisorium reilianum	51.61	3.00e-11	62.80
IUUC-Tru-118651	Takifugu rubripes	63.49	6.00e-71	260.00
IUUC-Tsy-118836	Tarsius syrichta	98.53	1.00e-48	186.00
IUUC-Tvi-122617	Trichoderma virens	51.28	3.00e-18	85.50
IUUC-Tae-124646	Triticum aestivum	36.14	6.00e-33	134.00
IUUC-Tur-126610	Triticum urartu	36.14	1.00e-32	134.00
IUUC-Tbe-127493	Tupaia belangeri	81.11	1.00e-70	259.00
IUUC-Ttr-128464	Tursiops truncatus	98.87	1.00e-105	376.00
IUUC-Uma-129484	Ustilago maydis	47.54	8.00e-12	64.70
IUUC-Vda-129946	Verticillium dahliae	45.52	2.00e-17	83.20
IUUC-Vpa-130357	Vicugna pacos	92.98	4.00e-66	244.00
IUUC-Vvi-130842	Vitis vinifera	36.36	1.00e-37	150.00
IUUC-Xtr-132679	Xenopus tropicalis	81.33	3.00e-66	245.00
IUUC-Yli-134615	Yarrowia lipolytica	42.79	3.00e-38	152.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence