iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000954

Ensembl Protein ID

EMT21321

UniProt Accession

M8CDU4; M8CDU4_AEGTA

Genbank Protein ID

EMT21321.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

KD524764

Gene Name

F775_02319

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_02319	EMT21321	EMT21321

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-34	117.4	554	592
UBD/Beta-Prp	2.80e-55	188.3	410	635

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D  +k+WDl+ g+ll+
   Q: 554  GHTRGVNAIRFtPDgRWVVSGGEDSAVKIWDLTAGKLLH 592
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 33   tikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleet 132
            +kvw  ++  + +++  h + v+++k+ ++++ +lvtg+eD+ +++w + ++  +++l gh++ v s++f+ +  ++++G +  t+++wdle+ + ++ t
   Q: 410  GVKVWVSSPTRVQEEFVAHASNVNCLKIGRKTSrVLVTGGEDHKVNLWAIGKPNSISSLPGHTSAVESVAFDSTEVFVAAGAASGTVKLWDLEEAKIVR-T 509
           58**************************998888***************************************99************************.* PP
   S: 133  lsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspn 233
           l+gh++  ++v +hp+g  ++sGslD+ +++Wd++++ +++t +g ht+ v+ + f+++g+ +vsg++d+ vk+wdl +g+ +++++ h+ ++++++f+p+
   Q: 510  LTGHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDSAVKIWDLTAGKLLHEFKSHEGQIQCIDFHPH 609
           ********************************************9.******************************************************* PP
   S: 234  derlvsgssDgsiriWdlrsgdllkt 259
           + +l++gs+D+++++Wdl++ +l+++
   Q: 610  EFLLATGSADKTVKFWDLETFELIGS 635
           *******************9887765 PP

Organism

Aegilops tauschii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MASLYVLAHR LSGLLGMIAM KHVLTMIVMN HVHDMPTQTQ DLSQAFVVSD SQFAPSFVED 60
SQPMSKMAPD SEVFASDSLY VPVVLVEPTT AAAAAALKLA AAKAKKDGRS NNMKWQPFMS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTCTG TGAGTTCAAT CCCCTTTCTC TCTGTTCCTT CTAGCTAGAT CTGAGCTGCA 60
GCTAGGGTTT GATCTAGATG CATGGTTGAT TAATGGTCTG ATCTGTGAGC TGCTATGGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR009027--Ribosomal_L9/RNase_H1_N
IPR011320--RNase_H1_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF01693--Cauli_VI
PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

ats:F775_02319

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002187	Ailuropoda melanoleuca	47.51	2.00e-83	302.00
IUUC-Apl-003305	Anas platyrhynchos	46.58	4.00e-84	305.00
IUUC-Aca-004635	Anolis carolinensis	43.87	1.00e-74	273.00
IUUC-Aly-005711	Arabidopsis lyrata	59.54	3.00e-153	535.00
IUUC-Ath-007606	Arabidopsis thaliana	58.88	2.00e-152	532.00
IUUC-Bgr-012225	Blumeria graminis	27.21	3.00e-29	122.00
IUUC-Bta-012527	Bos taurus	48.17	5.00e-86	311.00
IUUC-Bdi-014652	Brachypodium distachyon	73.67	0.00e+00	1373.00
IUUC-Bol-016374	Brassica oleracea	63.99	3.00e-148	518.00
IUUC-Bra-017068	Brassica rapa	64.48	1.00e-148	519.00
IUUC-Cja-019706	Callithrix jacchus	48.17	6.00e-86	311.00
IUUC-Cfa-020139	Canis familiaris	42.30	3.00e-82	298.00
IUUC-Cpo-021710	Cavia porcellus	47.84	4.00e-86	311.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	42.30	3.00e-72	266.00
IUUC-Csa-023546	Chlorocebus sabaeus	47.87	2.00e-82	299.00
IUUC-Cin-025156	Ciona intestinalis	44.48	4.00e-75	275.00
IUUC-Csv-025962	Ciona savignyi	46.32	6.00e-75	273.00
IUUC-Dre-028215	Danio rerio	45.69	8.00e-85	307.00
IUUC-Dno-029314	Dasypus novemcinctus	48.50	5.00e-86	311.00
IUUC-Dor-030482	Dipodomys ordii	48.17	1.00e-86	313.00
IUUC-Dme-032188	Drosophila melanogaster	34.73	3.00e-52	199.00
IUUC-Ete-032791	Echinops telfairi	33.63	9.00e-31	127.00
IUUC-Eca-034143	Equus caballus	47.95	4.00e-83	301.00
IUUC-Eeu-034996	Erinaceus europaeus	33.19	2.00e-30	126.00
IUUC-Fca-035924	Felis catus	48.22	2.00e-86	312.00
IUUC-Fal-037387	Ficedula albicollis	47.26	5.00e-85	308.00
IUUC-Gmo-038692	Gadus morhua	47.83	7.00e-87	314.00
IUUC-Gga-040597	Gallus gallus	44.66	7.00e-84	304.00
IUUC-Gac-042004	Gasterosteus aculeatus	47.00	5.00e-81	294.00
IUUC-Ggo-044761	Gorilla gorilla	48.17	6.00e-86	311.00
IUUC-Hsa-045698	Homo sapiens	46.30	3.00e-86	312.00
IUUC-Hvu-047649	Hordeum vulgare	83.11	0.00e+00	1565.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	48.17	1.00e-86	313.00
IUUC-Lch-049674	Latimeria chalumnae	47.62	3.00e-88	318.00
IUUC-Lpe-051554	Leersia perrieri	67.97	0.00e+00	1260.00
IUUC-Loc-052623	Lepisosteus oculatus	47.25	2.00e-83	302.00
IUUC-Lma-053115	Leptosphaeria maculans	27.78	1.00e-27	117.00
IUUC-Laf-054587	Loxodonta africana	48.17	4.00e-86	311.00
IUUC-Mcc-055851	Macaca mulatta	48.17	6.00e-86	311.00
IUUC-Meu-056704	Macropus eugenii	48.63	2.00e-86	312.00
IUUC-Mtr-058053	Medicago truncatula	64.40	2.00e-159	555.00
IUUC-Mmr-061154	Microcebus murinus	48.17	4.00e-86	311.00
IUUC-Mdo-062365	Monodelphis domestica	48.63	4.00e-86	311.00
IUUC-Mmu-063754	Mus musculus	47.83	2.00e-86	312.00
IUUC-Mac-064439	Musa acuminata	61.28	9.00e-163	566.00
IUUC-Mpu-066245	Mustela putorius furo	48.84	9.00e-87	313.00
IUUC-Mlu-067692	Myotis lucifugus	47.83	1.00e-85	310.00
IUUC-Nle-070051	Nomascus leucogenys	48.17	3.00e-86	312.00
IUUC-Opr-070855	Ochotona princeps	48.29	2.00e-86	312.00
IUUC-Ont-071883	Oreochromis niloticus	44.19	1.00e-78	286.00
IUUC-Oan-073293	Ornithorhynchus anatinus	48.16	3.00e-83	301.00
IUUC-Ocu-074644	Oryctolagus cuniculus	48.17	2.00e-86	313.00
IUUC-Oba-075448	Oryza barthii	59.61	0.00e+00	1035.00
IUUC-Obr-076385	Oryza brachyantha	65.30	0.00e+00	1190.00
IUUC-Ogl-077427	Oryza glaberrima	68.53	0.00e+00	1243.00
IUUC-Ogu-078428	Oryza glumaepatula	56.36	0.00e+00	856.00
IUUC-Oin-079811	Oryza indica	68.25	0.00e+00	1245.00
IUUC-Olo-080245	Oryza longistaminata	62.23	0.00e+00	1110.00
IUUC-Ome-081239	Oryza meridionalis	62.05	0.00e+00	1084.00
IUUC-Oni-082640	Oryza nivara	59.61	0.00e+00	1035.00
IUUC-Opu-083748	Oryza punctata	61.34	0.00e+00	1082.00
IUUC-Oru-084609	Oryza rufipogon	59.61	0.00e+00	1035.00
IUUC-Osa-085988	Oryza sativa	65.63	0.00e+00	1167.00
IUUC-Ola-087483	Oryzias latipes	44.05	6.00e-80	291.00
IUUC-Oga-087964	Otolemur garnettii	48.29	6.00e-86	311.00
IUUC-Oar-089483	Ovis aries	47.84	4.00e-84	305.00
IUUC-Ptr-091387	Pan troglodytes	46.30	3.00e-86	312.00
IUUC-Pan-092623	Papio anubis	48.17	6.00e-86	311.00
IUUC-Psi-093830	Pelodiscus sinensis	45.54	1.00e-81	296.00
IUUC-Ppa-095379	Physcomitrella patens	71.43	4.00e-133	468.00
IUUC-Pfo-096755	Poecilia formosa	46.46	2.00e-79	289.00
IUUC-Pab-097564	Pongo abelii	48.17	1.00e-85	310.00
IUUC-Pop-099149	Populus trichocarpa	58.52	5.00e-164	570.00
IUUC-Pca-100357	Procavia capensis	56.85	3.00e-73	268.00
IUUC-Ppe-101237	Prunus persica	64.84	8.00e-166	576.00
IUUC-Pva-102397	Pteropus vampyrus	45.18	3.00e-77	282.00
IUUC-Pte-104275	Pyrenophora teres	31.88	3.00e-27	116.00
IUUC-Rno-105349	Rattus norvegicus	47.83	2.00e-86	312.00
IUUC-Sha-107653	Sarcophilus harrisii	33.63	7.00e-31	128.00
IUUC-Smo-109379	Selaginella moellendorffii	68.51	2.00e-137	482.00
IUUC-Sit-110360	Setaria italica	70.33	0.00e+00	1250.00
IUUC-Stu-112462	Solanum tuberosum	60.04	2.00e-156	544.00
IUUC-Tru-117865	Takifugu rubripes	43.52	2.00e-74	273.00
IUUC-Tsy-119036	Tarsius syrichta	58.77	1.00e-37	150.00
IUUC-Tni-120903	Tetraodon nigroviridis	44.19	6.00e-76	278.00
IUUC-Tca-121185	Theobroma cacao	45.79	0.00e+00	728.00
IUUC-Tae-125263	Triticum aestivum	86.06	0.00e+00	1607.00
IUUC-Tur-126411	Triticum urartu	80.67	0.00e+00	1465.00
IUUC-Tme-127141	Tuber melanosporum	29.61	1.00e-28	120.00
IUUC-Tbe-127925	Tupaia belangeri	33.63	7.00e-31	127.00
IUUC-Ttr-128172	Tursiops truncatus	48.17	2.00e-86	312.00
IUUC-Vvi-131489	Vitis vinifera	64.36	1.00e-164	573.00
IUUC-Xtr-132915	Xenopus tropicalis	47.27	3.00e-84	305.00
IUUC-Xma-134133	Xiphophorus maculatus	45.79	6.00e-77	281.00
IUUC-Zma-135610	Zea mays	67.75	0.00e+00	1197.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence