iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ete-032453

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Recombination activating protein 1

Genbank Nucleotide ID

JN414885

Gene Name

RNF138; RAG1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSETEG00000015855.1	ENSETET00000015854.1	ENSETEP00000012858.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.40e-07	30.1	18	58

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadCl.qkwpglknssskefrCPlCr 46
           C++C+e +k+++++  C+Hvf+++C+  ++          ++CPlCr
   Q: 18   CPVCQEVLKTPVRTAACQHVFCRKCFlTAM------RDSGIHCPLCR 58
           **********999999*********96666......9*********8 PP

Organism

Echinops telfairi

Protein Sequence
(Fasta)

MAEELFAATS YTEDDFYCPV CQEVLKTPVR TAACQHVFCR KCFLTAMRDS GIHCPLCRGT 60
VTRRERACPE RALDLENIMR KYSGSCRCCA KQIKFYRMRH HYKSCKKYQD EYGSSIIPKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGAGG AGCTCTTCGC GGCCACGTCC TACACTGAAG ATGATTTCTA CTGCCCCGTC 60
TGTCAGGAGG TGCTCAAAAC GCCCGTGCGG ACCGCGGCCT GTCAGCACGT GTGAGTAGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0539--Nucleus

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF10426--zf-RAG1

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001267	Ailuropoda melanoleuca	72.65	3.00e-99	353.00
IUUC-Apl-003941	Anas platyrhynchos	70.73	1.00e-47	182.00
IUUC-Aca-005233	Anolis carolinensis	70.16	4.00e-51	194.00
IUUC-Bta-012999	Bos taurus	73.06	7.00e-100	355.00
IUUC-Cja-019489	Callithrix jacchus	72.65	6.00e-99	352.00
IUUC-Cfa-020567	Canis familiaris	91.67	2.00e-42	164.00
IUUC-Cpo-022165	Cavia porcellus	73.88	4.00e-101	360.00
IUUC-Csa-024096	Chlorocebus sabaeus	72.65	3.00e-99	353.00
IUUC-Cho-024686	Choloepus hoffmanni	71.43	3.00e-34	137.00
IUUC-Cgl-026426	Colletotrichum gloeosporioides	41.18	8.00e-09	54.70
IUUC-Dno-029625	Dasypus novemcinctus	73.47	5.00e-100	356.00
IUUC-Dor-030983	Dipodomys ordii	92.31	2.00e-69	254.00
IUUC-Eca-034367	Equus caballus	69.23	2.00e-78	284.00
IUUC-Eeu-034722	Erinaceus europaeus	96.55	1.00e-28	119.00
IUUC-Fca-036590	Felis catus	73.47	3.00e-100	357.00
IUUC-Fal-037287	Ficedula albicollis	71.76	8.00e-53	199.00
IUUC-Fox-037926	Fusarium oxysporum	39.02	1.00e-09	55.80
IUUC-Ggr-039833	Gaeumannomyces graminis	42.86	1.00e-06	47.40
IUUC-Gga-041055	Gallus gallus	72.50	3.00e-51	194.00
IUUC-Ggo-045324	Gorilla gorilla	72.24	9.00e-99	352.00
IUUC-Hsa-046364	Homo sapiens	72.24	9.00e-99	352.00
IUUC-Itr-048181	Ictidomys tridecemlineatus	93.08	2.00e-69	254.00
IUUC-Loc-052428	Lepisosteus oculatus	42.99	2.00e-22	98.60
IUUC-Laf-054506	Loxodonta africana	72.65	1.00e-99	355.00
IUUC-Mcc-054595	Macaca mulatta	68.75	2.00e-77	281.00
IUUC-Mor-057034	Magnaporthe oryzae	40.82	2.00e-07	50.10
IUUC-Mpo-057316	Magnaporthe poae	41.82	1.00e-06	47.80
IUUC-Mga-060068	Meleagris gallopavo	72.50	3.00e-51	194.00
IUUC-Mmr-060700	Microcebus murinus	91.54	2.00e-68	251.00
IUUC-Mdo-062243	Monodelphis domestica	90.00	3.00e-67	247.00
IUUC-Mmu-063719	Mus musculus	69.80	2.00e-96	344.00
IUUC-Mpu-065869	Mustela putorius furo	73.47	3.00e-100	357.00
IUUC-Mlu-068157	Myotis lucifugus	68.75	2.00e-77	280.00
IUUC-Nle-069538	Nomascus leucogenys	62.20	2.00e-76	277.00
IUUC-Opr-070640	Ochotona princeps	71.43	3.00e-98	350.00
IUUC-Oan-072919	Ornithorhynchus anatinus	62.31	1.00e-64	238.00
IUUC-Ocu-074897	Oryctolagus cuniculus	72.24	8.00e-99	352.00
IUUC-Olu-087618	Ostreococcus lucimarinus	53.12	2.00e-06	46.20
IUUC-Oga-088165	Otolemur garnettii	71.84	6.00e-99	352.00
IUUC-Oar-090364	Ovis aries	67.34	3.00e-72	263.00
IUUC-Ptr-090784	Pan troglodytes	72.24	9.00e-99	352.00
IUUC-Pan-091874	Papio anubis	72.65	3.00e-99	353.00
IUUC-Psi-093531	Pelodiscus sinensis	75.00	1.00e-52	199.00
IUUC-Pab-098013	Pongo abelii	72.24	9.00e-99	352.00
IUUC-Pca-100822	Procavia capensis	64.57	7.00e-76	275.00
IUUC-Pva-102936	Pteropus vampyrus	71.84	6.00e-99	352.00
IUUC-Rno-106110	Rattus norvegicus	72.41	3.00e-49	187.00
IUUC-Sha-107403	Sarcophilus harrisii	65.83	7.00e-71	259.00
IUUC-Sar-113678	Sorex araneus	89.16	2.00e-40	157.00
IUUC-Ssc-116192	Sus scrofa	73.47	3.00e-100	357.00
IUUC-Tgu-116820	Taeniopygia guttata	75.00	3.00e-52	197.00
IUUC-Tsy-119211	Tarsius syrichta	90.32	2.00e-47	181.00
IUUC-Tbe-127480	Tupaia belangeri	88.04	9.00e-44	169.00
IUUC-Ttr-128859	Tursiops truncatus	72.24	1.00e-99	355.00
IUUC-Vda-129783	Verticillium dahliae	39.13	4.00e-09	55.50
IUUC-Vpa-130682	Vicugna pacos	68.16	3.00e-87	314.00
IUUC-Xtr-131796	Xenopus tropicalis	56.52	2.00e-34	138.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence