iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-040195

Ensembl Protein ID

ENSGALP00000027325.5

UniProt Accession

E1BXW9; E1BXW9_CHICK

Genbank Protein ID

ENSGALP00000027325

Protein Name

Tudor domain-containing protein 3

Genbank Nucleotide ID

AADN04000121

Gene Name

TDRD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000016936.7	ENSGALT00000027376.5	ENSGALP00000027325.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.00e-09	38.6	288	325

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           de +l  ++eMGF++e+a+qaL +++nnleaA+++Ll+
   Q: 288  DEKALKHITEMGFSKEAARQALMDNSNNLEAALNFLLS 325
           78999*******************************97 PP

Organism

Gallus gallus

Protein Sequence
(Fasta)

MADRARAALS ESGWYLSDEG IETCINSSEK VNTNDIILVA LNTDLRTIGK KFLPSDINGG 60
KVEKLEGPCV LQIQKIRNVS APKDNEESQA APRMLRLQMT DGHTSCTAIE YNSMSKISLN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAGGGGTAG GGGAGACGAC TGGGCCGCTT CTCTCCTTCA AGCACCGGGC TCCCCGCGGC 60
GCCTGGCCCC GTGCTCAGCG GGTGAGCGGT GGCGGGACGC GCCATGGCCG ACAGGGCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR033472--DUF1767
IPR013894--RMI1_N
IPR010304--Survival_motor_neuron
IPR002999--Tudor
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50304--TUDOR
PS50030--UBA

Pfam

PF08585--RMI1_N
PF06003--SMN
PF00627--UBA

SMART

SM01161--DUF1767
SM00333--TUDOR
SM00165--UBA

Gene Ontology

GO:0005737--C:cytoplasm
GO:0035145--C:exon-exon junction complex
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0003713--F:transcription coactivator activity
GO:0006397--P:mRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000323	Aegilops tauschii	31.91	1.00e-16	80.10
IUUC-Aml-001751	Ailuropoda melanoleuca	76.16	0.00e+00	1046.00
IUUC-Atr-002788	Amborella trichopoda	32.28	1.00e-22	100.00
IUUC-Apl-004055	Anas platyrhynchos	93.35	0.00e+00	1196.00
IUUC-Aca-004367	Anolis carolinensis	76.78	0.00e+00	1092.00
IUUC-Aly-006072	Arabidopsis lyrata	36.31	7.00e-24	104.00
IUUC-Ath-007491	Arabidopsis thaliana	35.67	2.00e-23	103.00
IUUC-Ame-011439	Astyanax mexicanus	69.33	2.00e-109	389.00
IUUC-Bta-012894	Bos taurus	72.65	0.00e+00	1023.00
IUUC-Bdi-014462	Brachypodium distachyon	32.63	3.00e-22	99.40
IUUC-Bol-015343	Brassica oleracea	36.36	4.00e-23	102.00
IUUC-Bra-016787	Brassica rapa	36.48	8.00e-23	100.00
IUUC-Cel-018154	Caenorhabditis elegans	35.66	4.00e-30	125.00
IUUC-Cja-019364	Callithrix jacchus	74.58	0.00e+00	910.00
IUUC-Cfa-021166	Canis familiaris	76.05	0.00e+00	1025.00
IUUC-Cpo-021678	Cavia porcellus	66.45	0.00e+00	745.00
IUUC-Csa-023299	Chlorocebus sabaeus	75.60	0.00e+00	1105.00
IUUC-Cho-024694	Choloepus hoffmanni	86.06	2.00e-125	442.00
IUUC-Cin-025191	Ciona intestinalis	42.19	1.00e-45	175.00
IUUC-Csv-026348	Ciona savignyi	49.02	5.00e-11	58.90
IUUC-Dre-028715	Danio rerio	60.92	1.00e-127	450.00
IUUC-Dno-030091	Dasypus novemcinctus	75.68	0.00e+00	1056.00
IUUC-Dor-030807	Dipodomys ordii	65.24	0.00e+00	751.00
IUUC-Dme-031770	Drosophila melanogaster	32.45	3.00e-43	170.00
IUUC-Ete-032507	Echinops telfairi	54.82	6.00e-146	510.00
IUUC-Eca-033406	Equus caballus	73.16	0.00e+00	800.00
IUUC-Eeu-034600	Erinaceus europaeus	68.71	0.00e+00	783.00
IUUC-Fca-035916	Felis catus	76.37	0.00e+00	1046.00
IUUC-Fal-036658	Ficedula albicollis	91.30	0.00e+00	1259.00
IUUC-Gmo-038974	Gadus morhua	61.11	1.00e-100	360.00
IUUC-Gac-042537	Gasterosteus aculeatus	58.49	1.00e-130	460.00
IUUC-Gma-044234	Glycine max	35.05	1.00e-23	103.00
IUUC-Ggo-044715	Gorilla gorilla	73.44	0.00e+00	929.00
IUUC-Hsa-045814	Homo sapiens	75.87	0.00e+00	1105.00
IUUC-Hvu-047365	Hordeum vulgare	31.77	4.00e-18	85.50
IUUC-Itr-047866	Ictidomys tridecemlineatus	75.41	0.00e+00	1050.00
IUUC-Kpa-049313	Komagataella pastoris	28.57	3.00e-03	37.00
IUUC-Lch-050393	Latimeria chalumnae	62.23	0.00e+00	805.00
IUUC-Lpe-050691	Leersia perrieri	32.34	2.00e-21	97.10
IUUC-Loc-052859	Lepisosteus oculatus	56.65	0.00e+00	705.00
IUUC-Laf-053953	Loxodonta africana	71.40	0.00e+00	648.00
IUUC-Mcc-055846	Macaca mulatta	75.41	0.00e+00	1081.00
IUUC-Meu-056790	Macropus eugenii	63.55	0.00e+00	780.00
IUUC-Mtr-058749	Medicago truncatula	35.08	5.00e-21	95.10
IUUC-Mla-058959	Melampsora laricipopulina	45.59	2.00e-08	53.10
IUUC-Mga-059656	Meleagris gallopavo	97.26	0.00e+00	1312.00
IUUC-Mmr-061089	Microcebus murinus	74.26	0.00e+00	998.00
IUUC-Mdo-063043	Monodelphis domestica	63.78	0.00e+00	677.00
IUUC-Mmu-063654	Mus musculus	69.97	0.00e+00	967.00
IUUC-Mac-064947	Musa acuminata	36.84	3.00e-21	95.50
IUUC-Mpu-066115	Mustela putorius furo	74.10	0.00e+00	824.00
IUUC-Mlu-066974	Myotis lucifugus	71.90	0.00e+00	925.00
IUUC-Nle-069184	Nomascus leucogenys	76.14	0.00e+00	1115.00
IUUC-Opr-070770	Ochotona princeps	66.00	0.00e+00	785.00
IUUC-Ont-072040	Oreochromis niloticus	48.53	2.00e-180	625.00
IUUC-Oan-073448	Ornithorhynchus anatinus	82.74	4.00e-65	240.00
IUUC-Ocu-074405	Oryctolagus cuniculus	76.01	0.00e+00	1073.00
IUUC-Oba-075977	Oryza barthii	30.61	2.00e-16	79.70
IUUC-Obr-076298	Oryza brachyantha	28.06	1.00e-20	94.00
IUUC-Ogl-077706	Oryza glaberrima	28.29	2.00e-16	80.10
IUUC-Ogu-078381	Oryza glumaepatula	30.61	4.00e-17	82.00
IUUC-Oin-080150	Oryza indica	31.12	1.00e-16	80.50
IUUC-Ome-081153	Oryza meridionalis	28.57	2.00e-16	80.10
IUUC-Oni-083115	Oryza nivara	30.61	3.00e-16	79.00
IUUC-Opu-083860	Oryza punctata	30.77	2.00e-21	96.70
IUUC-Oru-084859	Oryza rufipogon	31.12	2.00e-16	80.10
IUUC-Osa-085567	Oryza sativa	31.12	3.00e-15	75.90
IUUC-Ola-087049	Oryzias latipes	47.47	2.00e-171	596.00
IUUC-Oga-088455	Otolemur garnettii	75.20	0.00e+00	1063.00
IUUC-Oar-090096	Ovis aries	75.41	0.00e+00	1058.00
IUUC-Ptr-090974	Pan troglodytes	74.27	0.00e+00	947.00
IUUC-Pan-092657	Papio anubis	75.47	0.00e+00	1108.00
IUUC-Psi-093113	Pelodiscus sinensis	82.95	0.00e+00	1037.00
IUUC-Ppa-095466	Physcomitrella patens	40.00	4.00e-25	108.00
IUUC-Pfo-096631	Poecilia formosa	46.80	7.00e-170	590.00
IUUC-Pab-098070	Pongo abelii	75.74	0.00e+00	1103.00
IUUC-Pop-099235	Populus trichocarpa	36.00	2.00e-21	96.70
IUUC-Pca-101032	Procavia capensis	67.64	0.00e+00	835.00
IUUC-Ppe-101793	Prunus persica	31.47	2.00e-23	103.00
IUUC-Pva-102290	Pteropus vampyrus	73.20	0.00e+00	910.00
IUUC-Rno-105080	Rattus norvegicus	69.02	0.00e+00	792.00
IUUC-Sce-106191	Saccharomyces cerevisiae	45.00	6.00e-04	39.30
IUUC-Sha-107598	Sarcophilus harrisii	73.43	0.00e+00	1032.00
IUUC-Sit-110735	Setaria italica	29.23	5.00e-20	91.70
IUUC-Sly-111126	Solanum lycopersicum	40.13	2.00e-20	92.80
IUUC-Stu-112780	Solanum tuberosum	34.41	5.00e-23	102.00
IUUC-Sar-113418	Sorex araneus	73.66	0.00e+00	890.00
IUUC-Sbi-113925	Sorghum bicolor	30.61	1.00e-21	97.40
IUUC-Ssc-115712	Sus scrofa	76.57	0.00e+00	1095.00
IUUC-Tgu-117148	Taeniopygia guttata	91.36	0.00e+00	1312.00
IUUC-Tru-117831	Takifugu rubripes	48.48	3.00e-174	605.00
IUUC-Tsy-118917	Tarsius syrichta	71.82	0.00e+00	845.00
IUUC-Tni-120783	Tetraodon nigroviridis	47.89	1.00e-170	593.00
IUUC-Tca-121430	Theobroma cacao	34.13	2.00e-07	50.40
IUUC-Tae-123752	Triticum aestivum	31.91	1.00e-16	80.90
IUUC-Tur-126238	Triticum urartu	33.33	6.00e-17	81.60
IUUC-Ttr-128615	Tursiops truncatus	68.56	0.00e+00	816.00
IUUC-Vpa-130531	Vicugna pacos	75.34	0.00e+00	929.00
IUUC-Vvi-131607	Vitis vinifera	39.07	1.00e-17	83.60
IUUC-Xtr-132787	Xenopus tropicalis	62.07	0.00e+00	786.00
IUUC-Xma-133815	Xiphophorus maculatus	47.83	2.00e-168	585.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence