iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-132015

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ring finger and WD repeat domain 3

Genbank Nucleotide ID

AAMC01003481

Gene Name

rfwd3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000007674.3	ENSXETT00000016697.2	ENSXETP00000016697.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	9.70e-07	29.4	156	200
E3 adaptor/Cullin RING/DCX/DWD	1.00e-06	29.1	408	439

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf.....kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiC+e+       + +  l+CgH+f ++C+++w     ++ ++++CP C+
   Q: 156  CAICFEPWtnagqHR-LSALRCGHLFGFTCIERW-----LKGGAAKCPQCN 200
           ********7666433.77899*************.....899********7 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
            +v+++++  ++ +++ +G  +g++ v+Dlr+
   Q: 408  RPVWSCCWcsDNsNYVYAGLINGSVLVYDLRD 439
           68*******6337****************997 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

LQMLHGALEQ LRQAAEQRSS VRRARVQRRS ARRQQRGGSQ RTAGTNSRAS LNSFFQINRT 60
QGLAPTSERV ERNALLRTEA TRTSPGGSSD ETVELSEEEE GIESSTDVDE VEINAGAAPP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTACAGATGC TCCACGGCGC TCTAGAACAG CTACGGCAAG CTGCTGAGCA ACGCTCCTCT 60
GTACGTCGTG CAAGGGTTCA AAGAAGGAGT GCCAGGCGGC AGCAAAGAGG AGGGTCACAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000929	Aegilops tauschii	23.11	2.00e-17	84.30
IUUC-Aml-001188	Ailuropoda melanoleuca	60.55	0.00e+00	733.00
IUUC-Atr-003034	Amborella trichopoda	27.33	1.00e-17	84.00
IUUC-Apl-003182	Anas platyrhynchos	65.32	0.00e+00	749.00
IUUC-Aca-004619	Anolis carolinensis	75.00	0.00e+00	763.00
IUUC-Aly-006391	Arabidopsis lyrata	25.45	4.00e-32	132.00
IUUC-Ath-007300	Arabidopsis thaliana	24.11	3.00e-32	133.00
IUUC-Ame-010890	Astyanax mexicanus	67.34	0.00e+00	705.00
IUUC-Bta-013051	Bos taurus	58.38	0.00e+00	712.00
IUUC-Bdi-014519	Brachypodium distachyon	25.81	6.00e-26	112.00
IUUC-Bol-015271	Brassica oleracea	28.86	8.00e-36	145.00
IUUC-Bra-017931	Brassica rapa	27.04	1.00e-34	140.00
IUUC-Cja-019240	Callithrix jacchus	57.83	0.00e+00	715.00
IUUC-Cfa-021010	Canis familiaris	59.26	0.00e+00	715.00
IUUC-Cpo-022308	Cavia porcellus	64.52	0.00e+00	669.00
IUUC-Csa-023501	Chlorocebus sabaeus	56.78	0.00e+00	710.00
IUUC-Cho-024900	Choloepus hoffmanni	52.36	0.00e+00	630.00
IUUC-Cin-025403	Ciona intestinalis	38.81	8.00e-102	364.00
IUUC-Csv-025819	Ciona savignyi	39.62	4.00e-50	191.00
IUUC-Cme-027123	Cyanidioschyzon merolae	24.44	3.00e-17	83.60
IUUC-Dre-028354	Danio rerio	63.54	0.00e+00	634.00
IUUC-Dno-029400	Dasypus novemcinctus	59.76	0.00e+00	722.00
IUUC-Dor-030320	Dipodomys ordii	61.02	1.00e-171	596.00
IUUC-Dme-031949	Drosophila melanogaster	27.36	4.00e-40	159.00
IUUC-Ete-032691	Echinops telfairi	45.67	2.00e-86	313.00
IUUC-Eca-034320	Equus caballus	59.31	0.00e+00	742.00
IUUC-Fca-035732	Felis catus	59.75	0.00e+00	730.00
IUUC-Fal-036648	Ficedula albicollis	74.46	0.00e+00	749.00
IUUC-Gmo-038609	Gadus morhua	62.53	1.00e-154	539.00
IUUC-Gga-040522	Gallus gallus	73.12	6.00e-114	404.00
IUUC-Gac-042318	Gasterosteus aculeatus	62.41	1.00e-151	528.00
IUUC-Gma-043184	Glycine max	34.92	2.00e-16	80.90
IUUC-Ggo-044464	Gorilla gorilla	58.72	0.00e+00	713.00
IUUC-Hsa-045991	Homo sapiens	58.41	0.00e+00	712.00
IUUC-Hvu-047705	Hordeum vulgare	25.38	8.00e-28	118.00
IUUC-Itr-047977	Ictidomys tridecemlineatus	68.52	0.00e+00	724.00
IUUC-Lch-050112	Latimeria chalumnae	65.01	0.00e+00	763.00
IUUC-Lpe-051605	Leersia perrieri	25.53	9.00e-21	95.10
IUUC-Loc-052241	Lepisosteus oculatus	72.56	0.00e+00	729.00
IUUC-Laf-054559	Loxodonta africana	58.32	0.00e+00	634.00
IUUC-Mcc-055093	Macaca mulatta	58.10	0.00e+00	710.00
IUUC-Meu-056417	Macropus eugenii	61.46	9.00e-179	619.00
IUUC-Mtr-058533	Medicago truncatula	27.53	2.00e-32	134.00
IUUC-Mga-059498	Meleagris gallopavo	61.87	0.00e+00	736.00
IUUC-Mmr-061782	Microcebus murinus	59.85	0.00e+00	704.00
IUUC-Mdo-062053	Monodelphis domestica	68.00	0.00e+00	709.00
IUUC-Mmu-063352	Mus musculus	65.73	0.00e+00	679.00
IUUC-Mac-064582	Musa acuminata	29.56	2.00e-27	117.00
IUUC-Mpu-066087	Mustela putorius furo	68.75	0.00e+00	714.00
IUUC-Mlu-068147	Myotis lucifugus	66.94	0.00e+00	700.00
IUUC-Nle-069503	Nomascus leucogenys	55.20	0.00e+00	654.00
IUUC-Opr-070479	Ochotona princeps	53.69	0.00e+00	631.00
IUUC-Ont-071700	Oreochromis niloticus	65.35	0.00e+00	663.00
IUUC-Oan-073702	Ornithorhynchus anatinus	74.34	0.00e+00	759.00
IUUC-Ocu-074886	Oryctolagus cuniculus	58.02	0.00e+00	708.00
IUUC-Oba-075729	Oryza barthii	27.07	6.00e-26	112.00
IUUC-Obr-076562	Oryza brachyantha	26.68	2.00e-22	100.00
IUUC-Ogl-077615	Oryza glaberrima	27.07	6.00e-26	112.00
IUUC-Ogu-078921	Oryza glumaepatula	26.72	1.00e-26	114.00
IUUC-Oin-079250	Oryza indica	26.12	8.00e-21	95.10
IUUC-Olo-080758	Oryza longistaminata	27.61	4.00e-26	112.00
IUUC-Ome-081707	Oryza meridionalis	26.69	9.00e-23	101.00
IUUC-Oni-083006	Oryza nivara	26.72	3.00e-26	113.00
IUUC-Opu-083650	Oryza punctata	27.50	2.00e-26	113.00
IUUC-Oru-084924	Oryza rufipogon	26.82	3.00e-27	116.00
IUUC-Osa-085820	Oryza sativa	26.72	2.00e-26	113.00
IUUC-Ola-087229	Oryzias latipes	64.05	1.00e-156	545.00
IUUC-Oga-088243	Otolemur garnettii	59.64	0.00e+00	719.00
IUUC-Oar-089461	Ovis aries	57.25	0.00e+00	717.00
IUUC-Ptr-090527	Pan troglodytes	58.41	0.00e+00	707.00
IUUC-Pan-092431	Papio anubis	57.00	0.00e+00	635.00
IUUC-Psi-093156	Pelodiscus sinensis	75.83	0.00e+00	795.00
IUUC-Pno-094897	Phaeosphaeria nodorum	26.67	1.00e-07	50.80
IUUC-Ppa-095305	Physcomitrella patens	37.80	2.00e-21	98.20
IUUC-Pfo-097065	Poecilia formosa	64.27	0.00e+00	639.00
IUUC-Pab-098272	Pongo abelii	58.41	0.00e+00	712.00
IUUC-Pop-099827	Populus trichocarpa	25.24	1.00e-31	130.00
IUUC-Pca-100713	Procavia capensis	54.36	0.00e+00	630.00
IUUC-Ppe-102103	Prunus persica	24.62	2.00e-32	133.00
IUUC-Pva-103133	Pteropus vampyrus	66.75	4.00e-162	565.00
IUUC-Pte-104191	Pyrenophora teres	36.63	5.00e-08	51.60
IUUC-Sha-107628	Sarcophilus harrisii	67.99	0.00e+00	710.00
IUUC-Sit-109891	Setaria italica	23.87	8.00e-29	121.00
IUUC-Sly-111779	Solanum lycopersicum	31.03	5.00e-33	135.00
IUUC-Stu-112817	Solanum tuberosum	43.44	1.00e-20	93.20
IUUC-Sar-113124	Sorex araneus	50.83	2.00e-132	466.00
IUUC-Sbi-114107	Sorghum bicolor	28.12	4.00e-31	129.00
IUUC-Ssc-115850	Sus scrofa	67.94	0.00e+00	706.00
IUUC-Tgu-117295	Taeniopygia guttata	72.83	0.00e+00	751.00
IUUC-Tru-117539	Takifugu rubripes	65.23	0.00e+00	653.00
IUUC-Tsy-118805	Tarsius syrichta	53.22	6.00e-80	291.00
IUUC-Tni-120274	Tetraodon nigroviridis	64.50	0.00e+00	655.00
IUUC-Tca-121162	Theobroma cacao	26.67	2.00e-28	120.00
IUUC-Tae-124822	Triticum aestivum	26.00	9.00e-28	118.00
IUUC-Tur-126162	Triticum urartu	26.69	4.00e-20	93.20
IUUC-Tbe-127884	Tupaia belangeri	47.95	2.00e-53	203.00
IUUC-Ttr-128665	Tursiops truncatus	69.84	2.00e-104	373.00
IUUC-Vpa-130385	Vicugna pacos	59.45	0.00e+00	723.00
IUUC-Vvi-131464	Vitis vinifera	25.93	3.00e-27	116.00
IUUC-Xma-133109	Xiphophorus maculatus	65.33	0.00e+00	639.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence