iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007686

Ensembl Protein ID

AT1G29320.2

UniProt Accession

Q0V856; Q0V856_ARATH

Genbank Protein ID

ABH04471.1; AEE31072.1

Protein Name

At1g29320; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

BT026364; CP002684

Gene Name

At1g29320; F28N24.28; F28N24_28

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G29320	AT1G29320.1	AT1G29320.1
AT1G29320	AT1G29320.2	AT1G29320.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.40e-06	27.0	303	333

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           +s++++    +    ++s++ D  ++v+D++t
   Q: 303  GSIRSV-VrhPQhQVIASCGLDRYLRVYDVKT 333
           677776.33544478**************987 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MPRVIPPENL GCPPFRALTF DSLGLIKVTE ARGQERGIPT VVNTWGEMNA SRSVLAASID 60
DRLRNPLLAV ARKDGNVEVI NPCNGDLHFS YSVFGDDGCS PEDNEISALH LFRKKIDDQT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACAACAAAA GCGGTGACCA AAATCAAAAC GTAGGGTTTT AAAAAGGGTT TCTCTTCTCT 60
TCTCCGTCGT CGAGCATCTG CAAATTATAC GGCGGCGATA AAAAATGCCT CGAGTCATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0030687--C:preribosome, large subunit precursor
GO:0042273--P:ribosomal large subunit biogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000787	Aegilops tauschii	54.37	7.00e-115	406.00
IUUC-Aml-001460	Ailuropoda melanoleuca	33.91	3.00e-27	115.00
IUUC-Atr-002657	Amborella trichopoda	49.37	2.00e-110	391.00
IUUC-Aly-006380	Arabidopsis lyrata	92.34	0.00e+00	756.00
IUUC-Ame-011942	Astyanax mexicanus	30.40	4.00e-26	111.00
IUUC-Bta-013382	Bos taurus	38.51	1.00e-27	116.00
IUUC-Bdi-014280	Brachypodium distachyon	52.86	4.00e-117	414.00
IUUC-Bra-017855	Brassica rapa	87.11	0.00e+00	669.00
IUUC-Cja-018933	Callithrix jacchus	38.51	2.00e-26	112.00
IUUC-Cfa-020634	Canis familiaris	32.94	7.00e-27	114.00
IUUC-Cpo-022089	Cavia porcellus	37.93	2.00e-25	108.00
IUUC-Csa-023835	Chlorocebus sabaeus	32.58	1.00e-27	116.00
IUUC-Cho-024385	Choloepus hoffmanni	40.98	3.00e-06	44.30
IUUC-Cin-025691	Ciona intestinalis	28.95	2.00e-20	92.80
IUUC-Dre-028473	Danio rerio	40.48	4.00e-28	118.00
IUUC-Dno-029687	Dasypus novemcinctus	32.42	3.00e-25	108.00
IUUC-Dme-031982	Drosophila melanogaster	28.16	1.00e-13	70.10
IUUC-Ete-032407	Echinops telfairi	44.44	5.00e-16	77.80
IUUC-Eca-033792	Equus caballus	29.61	7.00e-12	64.30
IUUC-Fca-036584	Felis catus	36.50	2.00e-27	115.00
IUUC-Gmo-039064	Gadus morhua	39.88	5.00e-28	117.00
IUUC-Gac-042170	Gasterosteus aculeatus	34.21	8.00e-27	113.00
IUUC-Gma-044150	Glycine max	61.69	6.00e-128	449.00
IUUC-Ggo-044955	Gorilla gorilla	36.54	2.00e-27	115.00
IUUC-Hsa-046615	Homo sapiens	36.54	2.00e-27	115.00
IUUC-Hvu-047119	Hordeum vulgare	51.52	2.00e-91	328.00
IUUC-Itr-048987	Ictidomys tridecemlineatus	34.50	7.00e-26	110.00
IUUC-Kpa-049188	Komagataella pastoris	26.26	2.00e-17	82.40
IUUC-Lch-050396	Latimeria chalumnae	36.97	3.00e-31	128.00
IUUC-Laf-054015	Loxodonta africana	39.08	1.00e-27	116.00
IUUC-Mcc-055589	Macaca mulatta	32.58	2.00e-27	115.00
IUUC-Meu-056160	Macropus eugenii	36.61	5.00e-13	67.80
IUUC-Mtr-057719	Medicago truncatula	60.00	8.00e-124	436.00
IUUC-Mmr-060801	Microcebus murinus	37.93	4.00e-26	111.00
IUUC-Mdo-062069	Monodelphis domestica	38.86	1.00e-26	113.00
IUUC-Mmu-063487	Mus musculus	38.15	1.00e-26	113.00
IUUC-Mpu-066542	Mustela putorius furo	33.91	6.00e-27	114.00
IUUC-Mlu-067520	Myotis lucifugus	38.51	6.00e-26	110.00
IUUC-Nle-069422	Nomascus leucogenys	36.54	1.00e-27	116.00
IUUC-Opr-070402	Ochotona princeps	26.20	2.00e-12	65.90
IUUC-Ont-072078	Oreochromis niloticus	36.00	3.00e-25	108.00
IUUC-Ocu-073886	Oryctolagus cuniculus	38.51	6.00e-27	114.00
IUUC-Obr-076206	Oryza brachyantha	53.75	1.00e-101	363.00
IUUC-Ogl-077112	Oryza glaberrima	53.59	1.00e-110	392.00
IUUC-Ogu-078172	Oryza glumaepatula	50.26	8.00e-100	356.00
IUUC-Oin-080070	Oryza indica	53.59	1.00e-110	392.00
IUUC-Olo-080534	Oryza longistaminata	50.81	1.00e-86	313.00
IUUC-Ome-081869	Oryza meridionalis	52.15	8.00e-108	383.00
IUUC-Opu-083828	Oryza punctata	52.70	8.00e-108	383.00
IUUC-Oru-084690	Oryza rufipogon	50.52	9.00e-103	366.00
IUUC-Ola-087342	Oryzias latipes	33.19	1.00e-23	103.00
IUUC-Oga-088865	Otolemur garnettii	35.10	1.00e-25	109.00
IUUC-Oar-090030	Ovis aries	32.03	3.00e-28	118.00
IUUC-Pan-092461	Papio anubis	32.58	3.00e-27	115.00
IUUC-Psi-093061	Pelodiscus sinensis	37.71	1.00e-26	112.00
IUUC-Pma-094281	Petromyzon marinus	35.20	2.00e-23	102.00
IUUC-Ppa-095623	Physcomitrella patens	44.27	1.00e-83	302.00
IUUC-Pfo-097074	Poecilia formosa	38.29	1.00e-21	96.70
IUUC-Pab-098290	Pongo abelii	36.54	2.00e-27	115.00
IUUC-Pop-099602	Populus trichocarpa	65.92	2.00e-140	490.00
IUUC-Pca-100383	Procavia capensis	38.00	4.00e-28	118.00
IUUC-Ppe-101867	Prunus persica	63.01	7.00e-141	493.00
IUUC-Rno-105494	Rattus norvegicus	38.15	2.00e-26	112.00
IUUC-Sha-107127	Sarcophilus harrisii	36.82	3.00e-26	112.00
IUUC-Sit-110466	Setaria italica	52.63	4.00e-105	374.00
IUUC-Sbi-113854	Sorghum bicolor	53.19	3.00e-111	394.00
IUUC-Ssc-116144	Sus scrofa	39.08	2.00e-27	116.00
IUUC-Tru-118516	Takifugu rubripes	37.14	4.00e-25	108.00
IUUC-Tni-120527	Tetraodon nigroviridis	36.57	2.00e-24	105.00
IUUC-Tae-123088	Triticum aestivum	55.28	4.00e-117	414.00
IUUC-Tur-126054	Triticum urartu	55.10	2.00e-91	329.00
IUUC-Ttr-128529	Tursiops truncatus	33.77	3.00e-26	111.00
IUUC-Vpa-130703	Vicugna pacos	42.11	1.00e-19	89.70
IUUC-Vvi-131680	Vitis vinifera	62.92	1.00e-139	488.00
IUUC-Xma-133396	Xiphophorus maculatus	29.72	4.00e-13	68.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence