iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076563

Ensembl Protein ID

OB02G40960.1

UniProt Accession

J3LHH9; J3LHH9_ORYBR

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB02G40960	OB02G40960.1	OB02G40960.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.40e-28	96.5	505	542
E3 activity/RING/U-box	4.20e-07	30.6	5	66
UBD/Beta-Prp	3.90e-41	141.8	329	629

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 505  GHKKAVSYVKFlSTNELASASTDSTLRLWDVKENCPVR 542
           8999*******9889****************9887766 PP

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqa 67
           ++lCpI + + +d   +++G+++   +I  +l+++   cP ++  lt+ +l Pn  l ++ ++
   Q: 5    DLLCPICMAVIKDAFLTSCGHSFCYMCIVTHLSHKSD-CPCCGNYLTKAQLYPNFLLDKVLKK 66
           589*****************************99999.****************988766655 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtlkgheds 96
            + ++++ f +d++l+at++ +++ikv++++t           + ++   + + +++++++ +   v +s+D  +++ vwd++t++ v+ +++he++
   Q: 329  ANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNepsdvhcpVVEMATRS-KLSCLSWNKYS-KNVIASSDyeGIVTVWDVQTRQSVMEYEEHEKR 423
           567899**************************5447777666655554444.599****9998.5677777777*********************** PP
   S: 97   vlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktg.kllrtltgghtdsvyslsfds 190
           ++s++fs++  + lvsGs+d  ++vw ++++     ++   ++ +++v+++p +  +++ Gs+D  +  +dl++  + ++ + g h+++v  ++f s
   Q: 424  AWSVDFSRTEpSMLVSGSDDCKVKVWCTKQEASA--INIDMKANICSVKYNPGSsHYVAVGSADHHIHYFDLRNPsTPVHVFGG-HKKAVSYVKFLS 517
           ********888***************55555555..67777777*********99*****************876167888877.***********9 PP
   S: 191  ngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn..............ssvisvavl 273
           + +el+s+s+d+t++lwd++++  vrt++gh++  + v +s n+e++++gs+ + ++++   ++ + k  ++h+              s +is  ++
   Q: 518  T-NELASASTDSTLRLWDVKENCPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVY---HKAISKPAANHRfvasdlddadddpgSYFISAVCW 610
           6.7*******************99**********************************9...78888888888888889********999999999* PP
   S: 274  sfgdnvlvlgsedskvniw 292
           + + + ++++ + ++++++
   Q: 611  KSDSPTMLTANSQGTIKVL 629
           ****************997 PP

Organism

Oryza brachyantha

Protein Sequence
(Fasta)

MADRDLLCPI CMAVIKDAFL TSCGHSFCYM CIVTHLSHKS DCPCCGNYLT KAQLYPNFLL 60
DKVLKKMSAR QIAKTASPVD QFRYALQQGN DMAIKELDSL MTLIAEKKRH MEQQESETNM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGACA GGGACCTCCT CTGTCCGATC TGCATGGCCG TCATCAAGGA CGCCTTCCTC 60
ACCTCCTGCG GCCACAGCTT CTGCTACATG TGCATCGTCA CGCACCTCAG CCACAAGAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

KEGG

obr:102702351

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	88.33	0.00e+00	1163.00
IUUC-Aml-001265	Ailuropoda melanoleuca	39.35	6.00e-122	430.00
IUUC-Atr-002460	Amborella trichopoda	78.45	0.00e+00	984.00
IUUC-Apl-003796	Anas platyrhynchos	39.23	7.00e-116	410.00
IUUC-Aca-005078	Anolis carolinensis	37.84	2.00e-116	412.00
IUUC-Aly-006014	Arabidopsis lyrata	73.69	0.00e+00	964.00
IUUC-Ath-007636	Arabidopsis thaliana	74.01	0.00e+00	966.00
IUUC-Ame-011176	Astyanax mexicanus	53.72	2.00e-37	149.00
IUUC-Bta-012595	Bos taurus	39.48	2.00e-122	432.00
IUUC-Bdi-014152	Brachypodium distachyon	90.97	0.00e+00	1197.00
IUUC-Bol-016380	Brassica oleracea	73.06	0.00e+00	955.00
IUUC-Bra-017690	Brassica rapa	71.84	0.00e+00	927.00
IUUC-Cja-018926	Callithrix jacchus	39.45	7.00e-122	430.00
IUUC-Cfa-021088	Canis familiaris	39.48	1.00e-122	432.00
IUUC-Cpo-022442	Cavia porcellus	38.85	9.00e-116	409.00
IUUC-Cre-022579	Chlamydomonas reinhardtii	31.39	6.00e-37	146.00
IUUC-Csa-024119	Chlorocebus sabaeus	39.48	1.00e-121	429.00
IUUC-Cin-025375	Ciona intestinalis	39.01	3.00e-116	411.00
IUUC-Cme-027350	Cyanidioschyzon merolae	43.53	5.00e-89	321.00
IUUC-Dre-028453	Danio rerio	38.79	2.00e-116	412.00
IUUC-Dno-029887	Dasypus novemcinctus	39.17	1.00e-122	432.00
IUUC-Dor-031110	Dipodomys ordii	52.63	1.00e-90	326.00
IUUC-Ete-033016	Echinops telfairi	52.46	2.00e-90	325.00
IUUC-Eca-034403	Equus caballus	38.47	5.00e-115	407.00
IUUC-Eeu-034690	Erinaceus europaeus	52.67	5.00e-85	307.00
IUUC-Fca-036475	Felis catus	38.88	7.00e-116	410.00
IUUC-Fal-037189	Ficedula albicollis	39.78	4.00e-122	431.00
IUUC-Gmo-039245	Gadus morhua	46.82	3.00e-101	361.00
IUUC-Gga-040806	Gallus gallus	39.45	5.00e-123	434.00
IUUC-Gac-042177	Gasterosteus aculeatus	37.50	1.00e-115	409.00
IUUC-Gma-044187	Glycine max	73.74	0.00e+00	935.00
IUUC-Ggo-044430	Gorilla gorilla	35.41	9.00e-78	283.00
IUUC-Hsa-045853	Homo sapiens	39.63	2.00e-122	432.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	52.86	2.00e-70	257.00
IUUC-Lch-050420	Latimeria chalumnae	39.14	1.00e-120	426.00
IUUC-Lpe-051219	Leersia perrieri	97.75	0.00e+00	1268.00
IUUC-Loc-052728	Lepisosteus oculatus	39.60	1.00e-113	403.00
IUUC-Laf-053775	Loxodonta africana	39.35	3.00e-122	431.00
IUUC-Meu-056595	Macropus eugenii	38.62	3.00e-56	212.00
IUUC-Mtr-058555	Medicago truncatula	73.43	0.00e+00	955.00
IUUC-Mga-059646	Meleagris gallopavo	38.91	7.00e-116	410.00
IUUC-Mmr-060990	Microcebus murinus	39.51	1.00e-121	429.00
IUUC-Mdo-062287	Monodelphis domestica	39.42	2.00e-122	432.00
IUUC-Mmu-064097	Mus musculus	39.63	1.00e-122	433.00
IUUC-Mac-065240	Musa acuminata	79.87	0.00e+00	1026.00
IUUC-Mpu-066612	Mustela putorius furo	38.91	2.00e-115	408.00
IUUC-Mlu-067967	Myotis lucifugus	38.50	9.00e-114	403.00
IUUC-Nle-069543	Nomascus leucogenys	39.48	3.00e-122	431.00
IUUC-Opr-070366	Ochotona princeps	44.39	4.00e-46	178.00
IUUC-Ont-071522	Oreochromis niloticus	38.41	3.00e-115	408.00
IUUC-Oan-073409	Ornithorhynchus anatinus	39.04	5.00e-114	404.00
IUUC-Ocu-073756	Oryctolagus cuniculus	39.33	3.00e-117	414.00
IUUC-Oba-075149	Oryza barthii	97.78	0.00e+00	1285.00
IUUC-Ogl-077701	Oryza glaberrima	98.10	0.00e+00	1293.00
IUUC-Ogu-078383	Oryza glumaepatula	98.10	0.00e+00	1293.00
IUUC-Oin-079965	Oryza indica	92.30	0.00e+00	1194.00
IUUC-Olo-080639	Oryza longistaminata	94.93	0.00e+00	1275.00
IUUC-Ome-081821	Oryza meridionalis	97.65	0.00e+00	1212.00
IUUC-Oni-082622	Oryza nivara	98.10	0.00e+00	1293.00
IUUC-Opu-083295	Oryza punctata	97.94	0.00e+00	1291.00
IUUC-Oru-084661	Oryza rufipogon	98.10	0.00e+00	1293.00
IUUC-Osa-085766	Oryza sativa	98.10	0.00e+00	1293.00
IUUC-Ola-086727	Oryzias latipes	40.37	3.00e-122	431.00
IUUC-Olu-087702	Ostreococcus lucimarinus	49.51	1.00e-79	288.00
IUUC-Oga-088215	Otolemur garnettii	39.01	2.00e-117	415.00
IUUC-Oar-089880	Ovis aries	39.01	2.00e-117	415.00
IUUC-Ptr-090597	Pan troglodytes	39.63	2.00e-122	432.00
IUUC-Pan-091987	Papio anubis	39.63	2.00e-122	432.00
IUUC-Psi-094033	Pelodiscus sinensis	38.66	1.00e-117	416.00
IUUC-Pma-094587	Petromyzon marinus	38.18	7.00e-108	383.00
IUUC-Ppa-095401	Physcomitrella patens	64.12	0.00e+00	808.00
IUUC-Pfo-097388	Poecilia formosa	47.70	3.00e-103	368.00
IUUC-Pab-098029	Pongo abelii	39.48	2.00e-122	432.00
IUUC-Pop-099319	Populus trichocarpa	72.71	0.00e+00	942.00
IUUC-Pca-100846	Procavia capensis	47.24	1.00e-102	366.00
IUUC-Ppe-101250	Prunus persica	68.46	0.00e+00	843.00
IUUC-Pva-102407	Pteropus vampyrus	39.48	5.00e-119	421.00
IUUC-Rno-105312	Rattus norvegicus	39.78	2.00e-123	436.00
IUUC-Sha-106514	Sarcophilus harrisii	46.93	4.00e-98	350.00
IUUC-Smo-109418	Selaginella moellendorffii	60.86	0.00e+00	797.00
IUUC-Sit-110248	Setaria italica	92.88	0.00e+00	1223.00
IUUC-Sly-110895	Solanum lycopersicum	74.17	0.00e+00	969.00
IUUC-Stu-112882	Solanum tuberosum	70.52	0.00e+00	892.00
IUUC-Sar-113230	Sorex araneus	43.67	6.00e-67	247.00
IUUC-Sbi-113962	Sorghum bicolor	88.67	0.00e+00	1175.00
IUUC-Ssc-115987	Sus scrofa	27.17	2.00e-24	106.00
IUUC-Tgu-116471	Taeniopygia guttata	39.47	1.00e-121	429.00
IUUC-Tru-118231	Takifugu rubripes	48.46	6.00e-103	367.00
IUUC-Tsy-119415	Tarsius syrichta	38.53	5.00e-114	404.00
IUUC-Tni-120893	Tetraodon nigroviridis	48.46	5.00e-103	367.00
IUUC-Tca-121619	Theobroma cacao	73.18	0.00e+00	964.00
IUUC-Tae-125524	Triticum aestivum	90.16	0.00e+00	1191.00
IUUC-Tur-126557	Triticum urartu	89.58	0.00e+00	1166.00
IUUC-Ttr-129100	Tursiops truncatus	39.07	6.00e-114	403.00
IUUC-Vpa-130613	Vicugna pacos	35.86	9.00e-100	356.00
IUUC-Vvi-130880	Vitis vinifera	78.31	0.00e+00	967.00
IUUC-Xtr-132033	Xenopus tropicalis	40.03	1.00e-127	449.00
IUUC-Xma-133421	Xiphophorus maculatus	47.70	3.00e-103	368.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence