iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/U-box	74.43	0.00e+00	714.00	IUUC-Hsa-046939

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MNRSIPVEVD ESEPFPSQLL NPIPESSPEE ELEPPAPNTR NTAPSSLSVL QRPPLKLANH 60
QPVSQQVTCL RAKVLEESEA SFLRRHPDLG KDVSSCSSEA SEPGSELGAL SLEHRFTHME 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGAGGGCG AGGGAGGTCT GAGCGGCCCG AGGTGGATCC CGGAGAGCAG AGCCCGCGAC 60
CACCCCCTGG GCCCGTCTGT CGGTGGCGAT CTTAGGTAAG CGAGCTCATT GGTCCCTGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR013568--SEFIR_dom
IPR000157--TIR_dom

PROSITE

PS51534--SEFIR

Pfam

PF08357--SEFIR

Gene Ontology

GO:0001783--P:B cell apoptotic process
GO:0006959--P:humoral immune response
GO:0048305--P:immunoglobulin secretion
GO:0002230--P:positive regulation of defense response to virus by host
GO:0043123--P:positive regulation of I-kappaB kinase/NF-kappaB signaling

KEGG

rno:361857

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002194	Ailuropoda melanoleuca	71.54	1.00e-179	622.00
IUUC-Apl-003292	Anas platyrhynchos	62.40	1.00e-117	416.00
IUUC-Aca-005173	Anolis carolinensis	50.17	1.00e-118	420.00
IUUC-Ame-010632	Astyanax mexicanus	55.75	2.00e-49	187.00
IUUC-Bta-012676	Bos taurus	73.57	0.00e+00	689.00
IUUC-Cja-019819	Callithrix jacchus	76.41	0.00e+00	723.00
IUUC-Cfa-020618	Canis familiaris	70.09	8.00e-173	600.00
IUUC-Cpo-021337	Cavia porcellus	74.25	0.00e+00	714.00
IUUC-Csa-023655	Chlorocebus sabaeus	76.35	0.00e+00	725.00
IUUC-Cho-024547	Choloepus hoffmanni	68.71	4.00e-176	611.00
IUUC-Dre-028655	Danio rerio	41.03	2.00e-45	176.00
IUUC-Dno-029255	Dasypus novemcinctus	73.39	0.00e+00	674.00
IUUC-Dor-030858	Dipodomys ordii	72.35	5.00e-175	607.00
IUUC-Ete-032597	Echinops telfairi	56.89	1.00e-66	247.00
IUUC-Eca-033990	Equus caballus	77.30	0.00e+00	724.00
IUUC-Eeu-034594	Erinaceus europaeus	72.13	0.00e+00	687.00
IUUC-Fca-035932	Felis catus	74.43	0.00e+00	710.00
IUUC-Fal-037433	Ficedula albicollis	50.51	1.00e-117	416.00
IUUC-Gmo-039640	Gadus morhua	55.83	7.00e-38	149.00
IUUC-Gga-040229	Gallus gallus	50.34	2.00e-118	419.00
IUUC-Gac-041660	Gasterosteus aculeatus	53.65	2.00e-50	191.00
IUUC-Gma-043508	Glycine max	46.15	7.90e+00	26.60
IUUC-Ggo-044913	Gorilla gorilla	69.62	0.00e+00	667.00
IUUC-Hsa-046939	Homo sapiens	75.83	0.00e+00	711.00
IUUC-Itr-047865	Ictidomys tridecemlineatus	86.41	2.00e-121	427.00
IUUC-Lch-049621	Latimeria chalumnae	52.30	8.00e-90	323.00
IUUC-Loc-052498	Lepisosteus oculatus	62.15	2.00e-58	220.00
IUUC-Laf-053734	Loxodonta africana	72.43	0.00e+00	687.00
IUUC-Mcc-054884	Macaca mulatta	76.35	0.00e+00	717.00
IUUC-Meu-056225	Macropus eugenii	93.90	1.00e-84	306.00
IUUC-Mga-059442	Meleagris gallopavo	48.72	1.00e-108	387.00
IUUC-Mmr-061017	Microcebus murinus	76.70	0.00e+00	761.00
IUUC-Mdo-062163	Monodelphis domestica	63.48	7.00e-163	566.00
IUUC-Mmu-064394	Mus musculus	87.48	0.00e+00	863.00
IUUC-Mpu-066777	Mustela putorius furo	75.04	0.00e+00	749.00
IUUC-Mlu-068135	Myotis lucifugus	74.96	0.00e+00	697.00
IUUC-Nle-070002	Nomascus leucogenys	72.87	0.00e+00	660.00
IUUC-Opr-070530	Ochotona princeps	63.49	6.00e-155	540.00
IUUC-Ont-071530	Oreochromis niloticus	53.06	5.00e-50	190.00
IUUC-Oan-073155	Ornithorhynchus anatinus	83.89	1.00e-80	291.00
IUUC-Ocu-074761	Oryctolagus cuniculus	66.09	1.00e-171	596.00
IUUC-Ola-086465	Oryzias latipes	52.75	5.00e-47	180.00
IUUC-Oga-088791	Otolemur garnettii	76.17	0.00e+00	747.00
IUUC-Oar-090442	Ovis aries	73.12	0.00e+00	702.00
IUUC-Ptr-091482	Pan troglodytes	75.83	0.00e+00	715.00
IUUC-Pan-092343	Papio anubis	70.14	0.00e+00	640.00
IUUC-Psi-093042	Pelodiscus sinensis	53.53	5.00e-140	491.00
IUUC-Pfo-097008	Poecilia formosa	59.20	3.00e-47	181.00
IUUC-Pab-098135	Pongo abelii	76.09	0.00e+00	724.00
IUUC-Pca-100508	Procavia capensis	71.20	0.00e+00	646.00
IUUC-Pva-103048	Pteropus vampyrus	75.65	0.00e+00	732.00
IUUC-Sha-107315	Sarcophilus harrisii	63.24	6.00e-164	570.00
IUUC-Stu-112808	Solanum tuberosum	19.77	7.50e-01	26.90
IUUC-Ssc-116085	Sus scrofa	74.43	0.00e+00	695.00
IUUC-Tgu-116885	Taeniopygia guttata	61.93	1.00e-116	412.00
IUUC-Tru-118396	Takifugu rubripes	58.70	9.00e-54	202.00
IUUC-Tni-120375	Tetraodon nigroviridis	56.18	1.00e-55	208.00
IUUC-Tbe-128139	Tupaia belangeri	91.07	2.00e-112	399.00
IUUC-Ttr-128651	Tursiops truncatus	72.13	0.00e+00	650.00
IUUC-Vpa-130559	Vicugna pacos	65.04	4.00e-159	554.00
IUUC-Xtr-132354	Xenopus tropicalis	65.14	3.00e-69	254.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence