iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006366

Ensembl Protein ID

Al_scaffold_0006_1678

UniProt Accession

D7LX33; D7LX33_ARALL

Genbank Protein ID

EFH50102.1

Protein Name

Predicted protein

Genbank Nucleotide ID

GL348718

Gene Name

TFL2; ARALYDRAFT_661613

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Al_scaffold_0006_1678	Al_scaffold_0006_1678	Al_scaffold_0006_1678

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	53.33	3.00e-10	64.30	IUUC-Hsa-046374
E3 activity/Other	53.33	2.00e-10	64.30	IUUC-Mmu-063344

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MKGASSVKKK TQLFNEAGEA DTVMETVGES RKISGDGGFF SDDGGGGGGE LILREMGDDR 60
RTEDEDEEED EDEDDGGDEE DEEGEGRGGK EERPKLDEGF YEIEAIRRKR VRKGKVQYLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAAGGGG CAAGTAGTGT TAAGAAGAAA ACCCAGTTGT TTAACGAAGC TGGTGAGGCG 60
GATACGGTAA TGGAAACTGT CGGAGAAAGC CGGAAAATAA GCGGCGACGG TGGGTTTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome

Interpro

IPR000953--Chromo/chromo_shadow_dom
IPR017984--Chromo_dom_subgr
IPR023780--Chromo_domain
IPR008251--Chromo_shadow_dom
IPR016197--Chromodomain-like
IPR023779--Chromodomain_CS

PROSITE

PS00598--CHROMO_1
PS50013--CHROMO_2

Pfam

PF00385--Chromo

PRINTS

PR00504--CHROMODOMAIN

SMART

SM00298--CHROMO
SM00300--ChSh

Gene Ontology

GO:0009507--C:chloroplast
GO:0000791--C:euchromatin
GO:0005720--C:nuclear heterochromatin
GO:0003677--F:DNA binding
GO:0003935--F:GTP cyclohydrolase II activity
GO:0006342--P:chromatin silencing
GO:0009825--P:multidimensional cell growth
GO:0009910--P:negative regulation of flower development
GO:0045857--P:negative regulation of molecular function, epigenetic
GO:0048573--P:photoperiodism, flowering
GO:0010016--P:shoot system morphogenesis
GO:0010048--P:vernalization response

KEGG

aly:ARALYDRAFT_661613

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003112	Amborella trichopoda	80.00	3.00e-25	108.00
IUUC-Aca-004445	Anolis carolinensis	47.50	2.00e-08	53.50
IUUC-Ath-006608	Arabidopsis thaliana	94.78	2.00e-155	541.00
IUUC-Acl-008244	Aspergillus clavatus	28.00	5.90e-01	28.90
IUUC-Ame-010980	Astyanax mexicanus	51.11	3.00e-11	62.80
IUUC-Bta-013216	Bos taurus	53.33	8.00e-12	64.70
IUUC-Bdi-014604	Brachypodium distachyon	34.51	5.00e-46	177.00
IUUC-Bol-015449	Brassica oleracea	69.19	3.00e-110	391.00
IUUC-Bra-017229	Brassica rapa	71.59	9.00e-111	392.00
IUUC-Cja-018821	Callithrix jacchus	50.00	5.10e-02	32.00
IUUC-Csa-024090	Chlorocebus sabaeus	53.33	8.00e-12	64.70
IUUC-Dre-027769	Danio rerio	51.11	3.00e-11	62.40
IUUC-Gmo-038639	Gadus morhua	66.67	1.00e-04	40.80
IUUC-Gga-040221	Gallus gallus	53.33	1.00e-11	63.90
IUUC-Gac-042105	Gasterosteus aculeatus	46.43	8.00e-12	64.70
IUUC-Ggo-044433	Gorilla gorilla	56.41	9.00e-11	61.20
IUUC-Hsa-046374	Homo sapiens	53.33	8.00e-12	64.70
IUUC-Hvu-047395	Hordeum vulgare	63.51	8.00e-22	97.40
IUUC-Itr-048523	Ictidomys tridecemlineatus	53.33	8.00e-12	64.70
IUUC-Lch-050606	Latimeria chalumnae	53.33	2.00e-11	63.50
IUUC-Loc-052513	Lepisosteus oculatus	53.33	2.00e-11	62.00
IUUC-Mmr-060774	Microcebus murinus	53.33	9.00e-12	64.30
IUUC-Mdo-062825	Monodelphis domestica	40.00	1.00e-03	37.40
IUUC-Mmu-063344	Mus musculus	53.33	8.00e-12	64.70
IUUC-Ont-071531	Oreochromis niloticus	48.21	1.00e-11	63.90
IUUC-Oba-075909	Oryza barthii	37.67	6.00e-53	200.00
IUUC-Obr-076678	Oryza brachyantha	60.00	2.00e-29	122.00
IUUC-Ogl-077833	Oryza glaberrima	37.13	1.00e-51	196.00
IUUC-Ogu-078599	Oryza glumaepatula	37.40	3.00e-52	198.00
IUUC-Oni-082564	Oryza nivara	37.40	3.00e-52	198.00
IUUC-Opu-083875	Oryza punctata	37.53	1.00e-52	199.00
IUUC-Oru-084465	Oryza rufipogon	37.40	3.00e-52	198.00
IUUC-Osa-085995	Oryza sativa	37.40	2.00e-52	199.00
IUUC-Ola-086942	Oryzias latipes	48.21	1.00e-11	63.90
IUUC-Oga-088509	Otolemur garnettii	53.33	1.00e-11	63.90
IUUC-Ptr-091416	Pan troglodytes	53.33	8.00e-12	64.70
IUUC-Pan-092459	Papio anubis	53.33	8.00e-12	64.70
IUUC-Pfo-096252	Poecilia formosa	48.21	9.00e-12	64.30
IUUC-Pca-100744	Procavia capensis	53.66	1.00e-10	60.50
IUUC-Pte-104285	Pyrenophora teres	34.43	2.00e-04	38.90
IUUC-Rno-105878	Rattus norvegicus	53.33	9.00e-12	64.30
IUUC-Sit-110439	Setaria italica	71.43	3.00e-24	105.00
IUUC-Sly-111669	Solanum lycopersicum	45.24	1.00e-32	133.00
IUUC-Stu-112251	Solanum tuberosum	43.79	4.00e-31	128.00
IUUC-Ssc-115965	Sus scrofa	53.33	9.00e-12	64.30
IUUC-Tgu-117367	Taeniopygia guttata	46.30	1.00e-08	54.30
IUUC-Tru-118259	Takifugu rubripes	55.56	8.00e-12	64.70
IUUC-Tni-120129	Tetraodon nigroviridis	55.56	1.00e-11	64.30
IUUC-Tae-124603	Triticum aestivum	40.28	3.00e-21	95.50
IUUC-Vvi-131282	Vitis vinifera	44.51	1.00e-63	236.00
IUUC-Xtr-132586	Xenopus tropicalis	53.33	3.00e-12	65.50
IUUC-Xma-133102	Xiphophorus maculatus	48.21	1.00e-11	64.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence