iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-013078

Ensembl Protein ID

ENSBTAP00000004611.4

UniProt Accession

Q32LB6; TAF1D_BOVIN

Genbank Protein ID

AAI09660.1

Protein Name

TATA box-binding protein-associated factor RNA polymerase I subunit D; TATA box-binding protein-associated factor 1D; Transcription initiation factor SL1/TIF-IB subunit D

Genbank Nucleotide ID

BC109659

Gene Name

TAF1D; JOSD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000003545.4	ENSBTAT00000004611.4	ENSBTAP00000004611.4

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/Other	62.36	2.00e-39	159.00	IUUC-Hsa-046930

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Bos taurus

Functional Description
(View)

Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits (By similarity).

Protein Sequence
(Fasta)

MDSLNYTTAC DSAVETENQS DNSSSGSSLF KTQCVPVPPK RRQRNTIRKF VHIPKNTQAT 60
ESSSDSSIEP RPLTLKAIFE RFKNKKRKRK KKKYKPTGRS VGRPKGRRTT RYSQITEKQF 120

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Nucleotide Sequence
(Fasta)

CTTTCCTCCC GCGCGACGGC GGAGGTTGCC TACAGTGTGC CTTTCGGAGT GCTATGGTCG 60
GTAGGTTGCT GTTCGCAGCA GAGGCCCGTA CCACGAGCCA GCGCAGGTTG GTATGCACCA 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR027976--TAF1D

Pfam

PF15333--TAF1D

Gene Ontology

GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0005668--C:RNA polymerase transcription factor SL1 complex
GO:0003677--F:DNA binding
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

bta:505533

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001853	Ailuropoda melanoleuca	72.94	3.00e-64	238.00
IUUC-Atr-003166	Amborella trichopoda	42.86	6.20e+00	23.90
IUUC-Apl-003575	Anas platyrhynchos	43.93	2.00e-21	95.50
IUUC-Aca-004568	Anolis carolinensis	43.70	2.00e-23	102.00
IUUC-Cja-019808	Callithrix jacchus	61.48	7.00e-58	216.00
IUUC-Cfa-020525	Canis familiaris	72.47	1.00e-60	226.00
IUUC-Cpo-021896	Cavia porcellus	67.54	8.00e-65	239.00
IUUC-Csa-024108	Chlorocebus sabaeus	60.52	6.00e-60	223.00
IUUC-Cho-024326	Choloepus hoffmanni	65.84	4.00e-67	247.00
IUUC-Dno-029104	Dasypus novemcinctus	71.78	2.00e-72	265.00
IUUC-Dor-030151	Dipodomys ordii	68.84	4.00e-53	201.00
IUUC-Ete-033189	Echinops telfairi	70.41	3.00e-56	211.00
IUUC-Eca-034238	Equus caballus	73.17	3.00e-79	287.00
IUUC-Fca-035711	Felis catus	73.41	2.00e-70	258.00
IUUC-Fal-037067	Ficedula albicollis	41.90	2.00e-19	88.60
IUUC-Gga-040782	Gallus gallus	42.31	1.00e-25	110.00
IUUC-Ggo-045155	Gorilla gorilla	60.89	8.00e-63	233.00
IUUC-Hsa-046930	Homo sapiens	60.52	4.00e-61	228.00
IUUC-Loc-052935	Lepisosteus oculatus	45.24	3.00e-02	33.90
IUUC-Laf-054040	Loxodonta africana	68.22	4.00e-67	247.00
IUUC-Mga-059429	Meleagris gallopavo	42.61	3.00e-22	99.00
IUUC-Mmr-061505	Microcebus murinus	70.83	5.00e-73	267.00
IUUC-Mdo-062193	Monodelphis domestica	53.49	4.00e-39	154.00
IUUC-Mmu-064127	Mus musculus	58.65	2.00e-57	215.00
IUUC-Mpu-065682	Mustela putorius furo	76.71	7.00e-54	203.00
IUUC-Mlu-067425	Myotis lucifugus	75.46	5.00e-88	317.00
IUUC-Nle-069897	Nomascus leucogenys	61.25	4.00e-62	231.00
IUUC-Opr-071021	Ochotona princeps	62.08	1.00e-59	223.00
IUUC-Oan-072853	Ornithorhynchus anatinus	43.12	1.00e-32	135.00
IUUC-Ocu-074088	Oryctolagus cuniculus	65.54	3.00e-69	254.00
IUUC-Oga-089058	Otolemur garnettii	63.53	5.00e-64	237.00
IUUC-Oar-089404	Ovis aries	95.09	4.00e-98	350.00
IUUC-Ptr-091491	Pan troglodytes	59.78	6.00e-61	227.00
IUUC-Pan-092706	Papio anubis	60.89	1.00e-60	226.00
IUUC-Psi-093986	Pelodiscus sinensis	35.85	4.00e-22	98.60
IUUC-Pab-097567	Pongo abelii	60.89	2.00e-62	231.00
IUUC-Pva-103062	Pteropus vampyrus	78.85	4.00e-72	263.00
IUUC-Rno-105375	Rattus norvegicus	56.80	1.00e-55	209.00
IUUC-Sha-106880	Sarcophilus harrisii	52.31	6.00e-41	160.00
IUUC-Ssc-115335	Sus scrofa	81.93	8.00e-28	115.00
IUUC-Tgu-117094	Taeniopygia guttata	42.06	7.00e-20	90.10
IUUC-Tsy-119189	Tarsius syrichta	68.35	4.00e-63	234.00
IUUC-Tbe-128047	Tupaia belangeri	60.30	5.00e-67	247.00
IUUC-Ttr-128715	Tursiops truncatus	84.27	1.00e-99	355.00
IUUC-Vpa-130195	Vicugna pacos	78.07	3.00e-90	324.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence