iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Yli-134518

Ensembl Protein ID

CAG82459

UniProt Accession

Q6CB23; CWC24_YARLI

Genbank Protein ID

CAG82459.1

Protein Name

Pre-mRNA-splicing factor CWC24

Genbank Nucleotide ID

CR382129

Gene Name

CWC24; YALI0C22484g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YALI0_C22484g	CAG82459	CAG82459

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.60e-06	25.5	206	243

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlC 45
           C+iC+ +fk  p+v++C H f+++C+ +        +k+++C +C
   Q: 206  CPICQGEFKS-PVVTQCCHYFCEKCFLAK------HKKKQNCFVC 243
           ********99.999************777......7888889998 PP

Organism

Yarrowia lipolytica

Functional Description
(View)

Involved in pre-mRNA splicing.

Protein Sequence
(Fasta)

MFKRKKNAGQ KRTTIIDSDS SSEGSGDESA LSSAFKRRKN DTQKRTTPTS VATSTKVRAP 60
SFSSTIDHSH SRNLSKTDEA TKETILYAKD DSDDSQKLSK GPYKVPFSKP TTTTTVGLKA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTCAAAC GAAAGAAAAA CGCGGGACAG AAACGAACCA CCATAATCGA CTCGGATTCG 60
TCGTCCGAAG GCTCTGGAGA TGAATCCGCG CTTTCCAGCG CCTTCAAACG CAGAAAAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0747--Spliceosome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000571--Znf_CCCH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50103--ZF_C3H1
PS50089--ZF_RING_2

Pfam

PF00642--zf-CCCH

SMART

SM00184--RING
SM00356--ZnF_C3H1

Gene Ontology

GO:0005684--C:U2-type spliceosomal complex
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0045292--P:mRNA cis splicing, via spliceosome
GO:0034247--P:snoRNA splicing

KEGG

yli:YALI0C22484g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000118	Aegilops tauschii	50.74	9.00e-35	139.00
IUUC-Aml-002002	Ailuropoda melanoleuca	49.29	2.00e-35	140.00
IUUC-Atr-003145	Amborella trichopoda	35.54	1.00e-29	121.00
IUUC-Apl-003440	Anas platyrhynchos	50.74	3.00e-37	146.00
IUUC-Aca-004421	Anolis carolinensis	52.14	8.00e-39	152.00
IUUC-Aly-006121	Arabidopsis lyrata	41.40	1.00e-36	144.00
IUUC-Ath-007493	Arabidopsis thaliana	41.40	6.00e-37	145.00
IUUC-Ago-007731	Ashbya gossypii	44.36	4.00e-34	135.00
IUUC-Acl-008186	Aspergillus clavatus	45.83	1.00e-35	141.00
IUUC-Afl-008484	Aspergillus flavus	38.62	1.00e-29	121.00
IUUC-Afu-008971	Aspergillus fumigatus	48.23	2.00e-37	147.00
IUUC-Ani-009499	Aspergillus nidulans	46.72	7.00e-37	145.00
IUUC-Ang-009717	Aspergillus niger	37.45	2.00e-37	147.00
IUUC-Aor-009898	Aspergillus oryzae	38.62	2.00e-29	120.00
IUUC-Ate-010508	Aspergillus terreus	43.57	6.00e-33	132.00
IUUC-Ame-011925	Astyanax mexicanus	47.14	3.00e-36	143.00
IUUC-Bgr-012259	Blumeria graminis	44.93	1.00e-34	137.00
IUUC-Bta-012958	Bos taurus	47.86	2.00e-35	140.00
IUUC-Bci-013882	Botrytis cinerea	44.20	5.00e-34	135.00
IUUC-Bdi-014084	Brachypodium distachyon	50.00	6.00e-35	139.00
IUUC-Bol-016607	Brassica oleracea	40.65	1.00e-35	142.00
IUUC-Bra-017747	Brassica rapa	39.72	2.00e-35	140.00
IUUC-Cel-018698	Caenorhabditis elegans	41.48	2.00e-28	118.00
IUUC-Cja-019434	Callithrix jacchus	49.29	2.00e-35	140.00
IUUC-Cfa-020902	Canis familiaris	49.29	2.00e-35	141.00
IUUC-Cre-022885	Chlamydomonas reinhardtii	40.14	1.00e-27	115.00
IUUC-Csa-023933	Chlorocebus sabaeus	36.55	1.00e-33	134.00
IUUC-Cho-024587	Choloepus hoffmanni	49.47	3.00e-22	96.30
IUUC-Cin-025328	Ciona intestinalis	47.83	4.00e-36	142.00
IUUC-Csv-026148	Ciona savignyi	50.72	2.00e-38	150.00
IUUC-Cgl-026700	Colletotrichum gloeosporioides	38.33	2.00e-34	137.00
IUUC-Cne-026816	Cryptococcus neoformans	45.11	1.00e-28	118.00
IUUC-Dre-027744	Danio rerio	48.55	1.00e-37	147.00
IUUC-Dno-029312	Dasypus novemcinctus	40.00	1.00e-07	48.90
IUUC-Dor-030446	Dipodomys ordii	40.00	1.00e-06	45.80
IUUC-Dse-031155	Dothistroma septosporum	47.76	2.00e-35	140.00
IUUC-Dme-031788	Drosophila melanogaster	48.23	7.00e-37	145.00
IUUC-Ete-033013	Echinops telfairi	49.29	6.00e-36	142.00
IUUC-Eca-033460	Equus caballus	49.29	1.00e-35	141.00
IUUC-Fca-035525	Felis catus	49.29	9.00e-36	141.00
IUUC-Fal-037206	Ficedula albicollis	52.14	4.00e-39	152.00
IUUC-Fox-037959	Fusarium oxysporum	42.36	1.00e-31	127.00
IUUC-Fso-038265	Fusarium solani	38.57	7.00e-36	141.00
IUUC-Gmo-038718	Gadus morhua	50.00	8.00e-38	148.00
IUUC-Ggr-040114	Gaeumannomyces graminis	37.44	4.00e-37	146.00
IUUC-Gga-041037	Gallus gallus	50.71	7.00e-38	148.00
IUUC-Gac-042103	Gasterosteus aculeatus	46.38	3.00e-35	140.00
IUUC-Gma-043581	Glycine max	39.35	2.00e-36	144.00
IUUC-Ggo-044906	Gorilla gorilla	49.29	2.00e-35	141.00
IUUC-Hsa-047000	Homo sapiens	49.29	2.00e-35	141.00
IUUC-Hvu-047578	Hordeum vulgare	43.43	1.00e-16	76.30
IUUC-Itr-048102	Ictidomys tridecemlineatus	49.29	5.00e-36	142.00
IUUC-Kpa-049320	Komagataella pastoris	50.72	5.00e-40	155.00
IUUC-Lch-050488	Latimeria chalumnae	48.55	4.00e-37	146.00
IUUC-Lpe-051156	Leersia perrieri	46.04	8.00e-29	118.00
IUUC-Loc-052670	Lepisosteus oculatus	47.83	7.00e-38	148.00
IUUC-Lma-053326	Leptosphaeria maculans	36.54	7.00e-35	139.00
IUUC-Laf-053570	Loxodonta africana	49.29	1.00e-35	141.00
IUUC-Mcc-055375	Macaca mulatta	49.29	2.00e-35	140.00
IUUC-Meu-056191	Macropus eugenii	50.00	3.00e-36	143.00
IUUC-Mor-057193	Magnaporthe oryzae	38.21	5.00e-35	139.00
IUUC-Mpo-057603	Magnaporthe poae	46.75	4.00e-36	142.00
IUUC-Mtr-058182	Medicago truncatula	37.50	1.00e-34	138.00
IUUC-Mla-058921	Melampsora laricipopulina	39.06	1.00e-21	93.60
IUUC-Mga-059281	Meleagris gallopavo	50.71	6.00e-38	149.00
IUUC-Mvi-060317	Microbotryum violaceum	43.88	6.00e-26	109.00
IUUC-Mmr-061744	Microcebus murinus	48.57	3.00e-35	140.00
IUUC-Mmu-064400	Mus musculus	49.29	4.00e-36	143.00
IUUC-Mac-065265	Musa acuminata	48.18	6.00e-30	122.00
IUUC-Mpu-066867	Mustela putorius furo	49.29	1.00e-35	141.00
IUUC-Mlu-067828	Myotis lucifugus	48.57	6.00e-35	139.00
IUUC-Nfi-068575	Neosartorya fischeri	46.81	1.00e-33	135.00
IUUC-Ncr-068828	Neurospora crassa	47.97	7.00e-34	135.00
IUUC-Nle-069137	Nomascus leucogenys	49.29	1.00e-35	141.00
IUUC-Ont-071497	Oreochromis niloticus	47.10	1.00e-35	141.00
IUUC-Oan-073182	Ornithorhynchus anatinus	48.57	3.00e-36	143.00
IUUC-Ocu-073949	Oryctolagus cuniculus	49.29	6.00e-36	142.00
IUUC-Oba-075693	Oryza barthii	47.79	3.00e-29	120.00
IUUC-Obr-076128	Oryza brachyantha	46.38	3.00e-29	120.00
IUUC-Ogl-077323	Oryza glaberrima	47.79	3.00e-29	120.00
IUUC-Ogu-078766	Oryza glumaepatula	47.79	3.00e-29	120.00
IUUC-Oin-080054	Oryza indica	47.79	3.00e-29	120.00
IUUC-Olo-080325	Oryza longistaminata	47.86	1.00e-23	101.00
IUUC-Ome-081331	Oryza meridionalis	47.79	9.00e-30	122.00
IUUC-Oni-082786	Oryza nivara	47.79	3.00e-29	120.00
IUUC-Opu-083855	Oryza punctata	47.79	3.00e-29	120.00
IUUC-Oru-084304	Oryza rufipogon	47.79	3.00e-29	120.00
IUUC-Osa-086166	Oryza sativa	47.79	2.00e-29	120.00
IUUC-Ola-086368	Oryzias latipes	50.00	2.00e-35	140.00
IUUC-Olu-087624	Ostreococcus lucimarinus	44.68	5.00e-31	125.00
IUUC-Oga-088080	Otolemur garnettii	49.29	1.00e-35	141.00
IUUC-Oar-089934	Ovis aries	48.57	4.00e-35	139.00
IUUC-Ptr-090827	Pan troglodytes	49.29	1.00e-35	141.00
IUUC-Pan-092245	Papio anubis	49.29	2.00e-35	140.00
IUUC-Psi-093790	Pelodiscus sinensis	49.29	6.00e-37	145.00
IUUC-Pma-094326	Petromyzon marinus	50.00	3.00e-38	149.00
IUUC-Pno-095057	Phaeosphaeria nodorum	38.78	5.00e-34	135.00
IUUC-Ppa-095690	Physcomitrella patens	49.26	2.00e-34	137.00
IUUC-Pfo-097026	Poecilia formosa	48.57	1.00e-36	144.00
IUUC-Pab-098689	Pongo abelii	49.29	1.00e-35	141.00
IUUC-Pca-100687	Procavia capensis	47.83	5.00e-34	135.00
IUUC-Ppe-101155	Prunus persica	39.91	8.00e-38	148.00
IUUC-Pva-102165	Pteropus vampyrus	40.00	1.00e-06	45.80
IUUC-Pgr-103440	Puccinia graminis	40.65	2.00e-28	117.00
IUUC-Ptt-103893	Puccinia triticina	31.33	5.00e-17	79.30
IUUC-Pte-104377	Pyrenophora teres	40.30	2.00e-37	147.00
IUUC-Pyt-104731	Pyrenophora triticirepentis	39.15	1.00e-37	147.00
IUUC-Rno-105967	Rattus norvegicus	49.29	7.00e-36	142.00
IUUC-Sce-106215	Saccharomyces cerevisiae	38.59	5.00e-34	135.00
IUUC-Sha-107587	Sarcophilus harrisii	48.55	4.00e-34	136.00
IUUC-Sja-107955	Schizosaccharomyces japonicus	48.09	4.00e-37	147.00
IUUC-Spo-108336	Schizosaccharomyces pombe	36.41	1.00e-36	145.00
IUUC-Smo-109109	Selaginella moellendorffii	51.85	1.00e-37	148.00
IUUC-Sit-110234	Setaria italica	48.53	1.00e-31	127.00
IUUC-Sly-111790	Solanum lycopersicum	45.99	5.00e-34	134.00
IUUC-Stu-111994	Solanum tuberosum	38.71	4.00e-37	146.00
IUUC-Sar-113374	Sorex araneus	48.57	1.00e-35	141.00
IUUC-Sbi-114766	Sorghum bicolor	47.06	3.00e-32	130.00
IUUC-Sre-115021	Sporisorium reilianum	37.50	1.00e-30	124.00
IUUC-Ssc-115474	Sus scrofa	48.57	3.00e-35	140.00
IUUC-Tgu-116649	Taeniopygia guttata	52.14	4.00e-39	152.00
IUUC-Tru-117701	Takifugu rubripes	43.93	4.00e-37	146.00
IUUC-Tsy-118995	Tarsius syrichta	36.00	6.00e-07	46.60
IUUC-Tni-120607	Tetraodon nigroviridis	43.83	8.00e-35	138.00
IUUC-Tca-121278	Theobroma cacao	39.34	6.00e-30	122.00
IUUC-Tre-122006	Trichoderma reesei	42.00	1.00e-28	117.00
IUUC-Tvi-122670	Trichoderma virens	43.24	3.00e-32	130.00
IUUC-Tae-122716	Triticum aestivum	50.74	9.00e-35	138.00
IUUC-Tur-126208	Triticum urartu	51.47	1.00e-34	138.00
IUUC-Tme-126908	Tuber melanosporum	38.16	5.00e-37	145.00
IUUC-Tbe-127394	Tupaia belangeri	49.29	2.00e-35	140.00
IUUC-Ttr-128496	Tursiops truncatus	38.00	4.00e-07	47.40
IUUC-Uma-129339	Ustilago maydis	41.73	9.00e-31	125.00
IUUC-Vda-129895	Verticillium dahliae	36.99	2.00e-35	140.00
IUUC-Vpa-130519	Vicugna pacos	49.29	4.00e-36	142.00
IUUC-Vvi-131382	Vitis vinifera	36.57	3.00e-29	120.00
IUUC-Xtr-131923	Xenopus tropicalis	47.10	2.00e-36	144.00
IUUC-Xma-133705	Xiphophorus maculatus	48.57	7.00e-37	145.00
IUUC-Zma-135029	Zea mays	48.15	3.00e-31	127.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence