iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006922

Ensembl Protein ID

AT5G50650.1

UniProt Accession

Q9FGP3; Q9FGP3_ARATH

Genbank Protein ID

ABM05998.1; AED95957.1; AED95973.1; BAB09140.1; BAD94692.1

Protein Name

At5g50550; St12p protein; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

BT029728; CP002688; CP002688; AB025619; AK221493

Gene Name

MFB16.9; At5g50550; At5g50650

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G50650	AT5G50650.1	AT5G50650.1

Annotation

mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-08	35.0	147	172

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 8    claf.sd.tllvsGsdDgtikvWDlr 31
           +l+f +d t l++G+ Dgt++v+++ 
   Q: 147  SLSFnQDgTVLATGAEDGTLRVFEWP 172
           78999888***************975 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MASNQQPPSN LQTYGVPIYA VDWILEEAVR SKITKDQDDD DDDGSSSSSY IVLSGGGGEG 60
RSGIPNVILI CRVDLHTNSL SEQPIGRRVI GTDLPYRMAI HPRQGGLICA LPNSCRLFDW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAATTTCGA ATTATTTGGT TCTGTGTGAA TAAATAAACT GGGCTTTATT GGGCTTAAGG 60
CCCATCTCCG TTGTCGTCTT CAAGGTCACG CTTACAGACT TGGCTCCGCC GCTCCGGCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030176--C:integral component of endoplasmic reticulum membrane
GO:0005096--F:GTPase activator activity
GO:0051020--F:GTPase binding
GO:0005090--F:Sar guanyl-nucleotide exchange factor activity
GO:0009306--P:protein secretion
GO:0003400--P:regulation of COPII vesicle coating

KEGG

ath:AT5G50550; ath:AT5G50650

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000155	Aegilops tauschii	32.00	2.00e-39	155.00
IUUC-Aml-001671	Ailuropoda melanoleuca	25.30	7.00e-12	64.30
IUUC-Atr-002477	Amborella trichopoda	33.63	2.00e-35	142.00
IUUC-Cel-018480	Caenorhabditis elegans	25.89	2.00e-08	52.80
IUUC-Cja-018998	Callithrix jacchus	27.02	8.00e-14	70.90
IUUC-Cfa-020666	Canis familiaris	26.32	1.00e-12	67.40
IUUC-Csa-023521	Chlorocebus sabaeus	28.51	3.00e-12	65.90
IUUC-Dre-027832	Danio rerio	26.58	2.00e-13	69.70
IUUC-Dno-028989	Dasypus novemcinctus	27.94	3.00e-14	72.40
IUUC-Dme-031901	Drosophila melanogaster	27.66	6.00e-12	64.70
IUUC-Ete-032290	Echinops telfairi	28.03	2.00e-10	59.70
IUUC-Eca-033917	Equus caballus	28.00	1.00e-13	70.50
IUUC-Fca-036323	Felis catus	26.32	7.00e-13	67.80
IUUC-Gmo-038693	Gadus morhua	24.69	6.00e-12	64.70
IUUC-Gga-040702	Gallus gallus	28.69	4.00e-15	75.50
IUUC-Gac-042635	Gasterosteus aculeatus	26.36	5.00e-09	55.10
IUUC-Gma-043946	Glycine max	48.66	5.00e-87	313.00
IUUC-Itr-048613	Ictidomys tridecemlineatus	26.64	4.00e-13	68.60
IUUC-Lch-049473	Latimeria chalumnae	27.59	3.00e-14	72.40
IUUC-Loc-052177	Lepisosteus oculatus	26.72	2.00e-14	72.80
IUUC-Laf-054366	Loxodonta africana	27.31	4.00e-13	68.60
IUUC-Mcc-055775	Macaca mulatta	28.21	2.00e-13	69.70
IUUC-Mtr-058661	Medicago truncatula	49.73	3.00e-91	327.00
IUUC-Mmr-061126	Microcebus murinus	26.92	1.00e-12	67.00
IUUC-Mmu-064083	Mus musculus	28.22	1.00e-15	77.00
IUUC-Mpu-066857	Mustela putorius furo	26.21	8.00e-13	67.40
IUUC-Mlu-067891	Myotis lucifugus	26.56	3.00e-12	65.50
IUUC-Nle-070030	Nomascus leucogenys	27.90	2.00e-13	69.70
IUUC-Oan-073643	Ornithorhynchus anatinus	27.66	5.00e-10	57.40
IUUC-Oba-075587	Oryza barthii	45.30	3.00e-68	251.00
IUUC-Ome-082007	Oryza meridionalis	45.03	4.00e-68	251.00
IUUC-Oga-088417	Otolemur garnettii	25.41	6.00e-13	67.80
IUUC-Pan-092527	Papio anubis	28.51	3.00e-12	65.90
IUUC-Pma-094156	Petromyzon marinus	29.18	5.00e-15	74.70
IUUC-Pab-097720	Pongo abelii	27.35	1.00e-12	67.40
IUUC-Pva-103192	Pteropus vampyrus	26.72	3.00e-13	68.90
IUUC-Ptt-103883	Puccinia triticina	30.77	2.00e-09	55.80
IUUC-Rno-106123	Rattus norvegicus	26.89	4.00e-15	75.10
IUUC-Sha-107169	Sarcophilus harrisii	26.02	3.00e-13	68.90
IUUC-Ssc-115282	Sus scrofa	27.64	1.00e-12	67.00
IUUC-Tur-126597	Triticum urartu	32.29	1.00e-29	122.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence