iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ola-086880

Ensembl Protein ID

ENSORLP00000007931.1

UniProt Accession

H2LPE8; H2LPE8_ORYLA

Genbank Protein ID

ENSORLP00000007931

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

BAAF04001349

Gene Name

chd4a; LOC101174845

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSORLG00000006310.1	ENSORLT00000007932.1	ENSORLP00000007931.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.10e-16	61.0	436	480

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  +e pn e wiCp+C+
   Q: 436  EFCRVCKDGGE----LLCCDSCPSSYHIHCLNPP-LPEIPNGE-WICPRCT 480
           58*********....*******************.*******8.******6 PP

Organism

Oryzias latipes

Protein Sequence
(Fasta)

DDEEEEISEN ETPKVRKKKK AKKSKESKSS KRRSRREVNL FLHQELAISS PEPMDIGGIE 60
DGGEGPGQRS DSEGSDYTPG RKKKKRGGSS KEKKRNSAGV DRSSSKRKEP EPEEDDDEDD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATGATGAGG AAGAGGAGAT CTCGGAGAAT GAGACTCCGA AGGTGAGGAA GAAGAAAAAA 60
GCCAAGAAAA GCAAAGAGAG CAAAAGCAGC AAGAGGCGGT CTCGCAGAGA GGTAAATGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0031101--P:fin regeneration
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001361	Ailuropoda melanoleuca	78.45	0.00e+00	2380.00
IUUC-Apl-004175	Anas platyrhynchos	80.11	0.00e+00	2391.00
IUUC-Aca-004774	Anolis carolinensis	79.76	0.00e+00	2392.00
IUUC-Aly-005645	Arabidopsis lyrata	44.19	2.00e-151	530.00
IUUC-Ath-007406	Arabidopsis thaliana	39.81	7.00e-156	545.00
IUUC-Ago-007719	Ashbya gossypii	32.33	8.00e-74	271.00
IUUC-Ame-011098	Astyanax mexicanus	86.02	0.00e+00	2562.00
IUUC-Bta-013220	Bos taurus	85.54	0.00e+00	1950.00
IUUC-Bol-016073	Brassica oleracea	40.51	1.00e-154	541.00
IUUC-Bra-016724	Brassica rapa	40.37	4.00e-156	546.00
IUUC-Cel-018108	Caenorhabditis elegans	56.93	0.00e+00	1344.00
IUUC-Cfa-020422	Canis familiaris	85.10	0.00e+00	1953.00
IUUC-Cpo-021704	Cavia porcellus	84.93	0.00e+00	1957.00
IUUC-Cre-022710	Chlamydomonas reinhardtii	30.13	3.00e-55	211.00
IUUC-Csa-023625	Chlorocebus sabaeus	85.70	0.00e+00	1961.00
IUUC-Cho-024361	Choloepus hoffmanni	81.01	0.00e+00	1350.00
IUUC-Cin-025596	Ciona intestinalis	53.30	2.00e-60	226.00
IUUC-Csv-025847	Ciona savignyi	54.43	0.00e+00	1404.00
IUUC-Dre-027505	Danio rerio	81.18	0.00e+00	2646.00
IUUC-Dno-029656	Dasypus novemcinctus	85.54	0.00e+00	1952.00
IUUC-Dse-031225	Dothistroma septosporum	32.51	1.00e-75	278.00
IUUC-Dme-032150	Drosophila melanogaster	62.04	0.00e+00	1438.00
IUUC-Ete-032757	Echinops telfairi	63.30	0.00e+00	2034.00
IUUC-Eca-034112	Equus caballus	84.93	0.00e+00	1952.00
IUUC-Fca-036056	Felis catus	85.10	0.00e+00	1954.00
IUUC-Fal-037312	Ficedula albicollis	86.92	0.00e+00	1970.00
IUUC-Gga-040216	Gallus gallus	81.05	0.00e+00	2402.00
IUUC-Gac-042478	Gasterosteus aculeatus	84.93	0.00e+00	2227.00
IUUC-Gma-043999	Glycine max	43.57	0.00e+00	756.00
IUUC-Hsa-045908	Homo sapiens	82.79	0.00e+00	1966.00
IUUC-Itr-048002	Ictidomys tridecemlineatus	85.54	0.00e+00	1952.00
IUUC-Kpa-049261	Komagataella pastoris	34.38	2.00e-73	270.00
IUUC-Lch-049948	Latimeria chalumnae	71.34	0.00e+00	1806.00
IUUC-Loc-052144	Lepisosteus oculatus	90.34	0.00e+00	2055.00
IUUC-Laf-053749	Loxodonta africana	69.50	0.00e+00	1907.00
IUUC-Mcc-055773	Macaca mulatta	83.97	0.00e+00	1960.00
IUUC-Mga-059633	Meleagris gallopavo	80.92	0.00e+00	2406.00
IUUC-Mmr-060886	Microcebus murinus	78.23	0.00e+00	2352.00
IUUC-Mdo-062872	Monodelphis domestica	83.20	0.00e+00	1908.00
IUUC-Mmu-063672	Mus musculus	85.10	0.00e+00	1959.00
IUUC-Mpu-066692	Mustela putorius furo	85.10	0.00e+00	1954.00
IUUC-Ncr-068920	Neurospora crassa	31.35	4.00e-68	253.00
IUUC-Nle-070039	Nomascus leucogenys	82.71	0.00e+00	1957.00
IUUC-Ont-072418	Oreochromis niloticus	87.67	0.00e+00	2803.00
IUUC-Ocu-074177	Oryctolagus cuniculus	85.37	0.00e+00	1952.00
IUUC-Obr-076240	Oryza brachyantha	35.11	3.00e-73	270.00
IUUC-Opu-083477	Oryza punctata	34.44	1.00e-74	275.00
IUUC-Oga-088970	Otolemur garnettii	78.11	0.00e+00	2345.00
IUUC-Oar-090422	Ovis aries	85.54	0.00e+00	1950.00
IUUC-Pan-092441	Papio anubis	85.70	0.00e+00	1961.00
IUUC-Psi-093530	Pelodiscus sinensis	85.19	0.00e+00	2000.00
IUUC-Ppa-095213	Physcomitrella patens	41.80	0.00e+00	716.00
IUUC-Pfo-097530	Poecilia formosa	88.22	0.00e+00	2823.00
IUUC-Pab-097959	Pongo abelii	77.82	0.00e+00	2315.00
IUUC-Pop-099531	Populus trichocarpa	32.45	7.00e-72	265.00
IUUC-Pca-100559	Procavia capensis	65.38	0.00e+00	1735.00
IUUC-Ppe-101528	Prunus persica	34.06	6.00e-74	272.00
IUUC-Pva-103186	Pteropus vampyrus	83.44	0.00e+00	1935.00
IUUC-Rno-105692	Rattus norvegicus	85.09	0.00e+00	1959.00
IUUC-Sce-106234	Saccharomyces cerevisiae	32.01	1.00e-70	261.00
IUUC-Sja-107874	Schizosaccharomyces japonicus	32.75	5.00e-69	256.00
IUUC-Spo-108021	Schizosaccharomyces pombe	32.48	1.00e-70	261.00
IUUC-Smo-108946	Selaginella moellendorffii	39.04	1.00e-154	541.00
IUUC-Sly-110976	Solanum lycopersicum	43.49	0.00e+00	749.00
IUUC-Stu-112189	Solanum tuberosum	34.19	8.00e-71	262.00
IUUC-Sbi-114606	Sorghum bicolor	35.64	3.00e-76	280.00
IUUC-Ssc-115295	Sus scrofa	84.93	0.00e+00	1951.00
IUUC-Tgu-117484	Taeniopygia guttata	81.12	0.00e+00	2389.00
IUUC-Tru-118745	Takifugu rubripes	83.22	0.00e+00	2767.00
IUUC-Tre-121868	Trichoderma reesei	32.05	8.00e-66	245.00
IUUC-Tbe-128117	Tupaia belangeri	74.28	0.00e+00	978.00
IUUC-Ttr-128478	Tursiops truncatus	73.51	0.00e+00	2167.00
IUUC-Vpa-130209	Vicugna pacos	84.52	2.00e-159	557.00
IUUC-Vvi-130849	Vitis vinifera	43.26	0.00e+00	743.00
IUUC-Xma-133956	Xiphophorus maculatus	88.02	0.00e+00	2824.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence