iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099131

Ensembl Protein ID

POPTR_0010s19940.1

UniProt Accession

A9PCS2; A9PCS2_POPTR

Genbank Protein ID

ABK94175.1; EEF01343.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

EF146071; CM000346

Gene Name

POPTRDRAFT_659552; POPTR_0010s19940g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s19940	POPTR_0010s19940.1	POPTR_0010s19940.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	40.68	6.00e-53	205.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAAIEQQTVL QFAPSSSSTL SAKVHPLVIF NICDCYVRRP DQAERVIGTL LGSVLPDGTV 60
DIRNSYAVPH NESSEQVALD IDYHHNLLLS HQKVNPKEVI VGWYSTGLGV TGGSALIHDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCCTTCCCA AAAACCCTAA TCGCTCACGC CCTCTTTCTC TATCATCTCT CTCGGCCTCT 60
CTTTGCTTCA AATCGAGATC GGAGAATGGC GGCGATCGAG CAGCAAACAG TCCTCCAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
GO:0006413--P:translational initiation

KEGG

pop:POPTR_0010s19940g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	64.78	8.00e-107	379.00
IUUC-Aml-001527	Ailuropoda melanoleuca	40.68	2.00e-58	219.00
IUUC-Atr-002686	Amborella trichopoda	75.36	5.00e-113	399.00
IUUC-Apl-003977	Anas platyrhynchos	39.09	2.00e-46	178.00
IUUC-Aca-004335	Anolis carolinensis	40.00	2.00e-59	221.00
IUUC-Aly-005945	Arabidopsis lyrata	78.84	4.00e-125	439.00
IUUC-Ath-007045	Arabidopsis thaliana	77.13	8.00e-123	432.00
IUUC-Acl-008365	Aspergillus clavatus	36.65	6.00e-46	177.00
IUUC-Afl-008742	Aspergillus flavus	36.30	1.00e-44	172.00
IUUC-Afu-009030	Aspergillus fumigatus	36.30	1.00e-45	176.00
IUUC-Ani-009212	Aspergillus nidulans	35.07	5.00e-44	171.00
IUUC-Ang-009712	Aspergillus niger	35.94	2.00e-44	172.00
IUUC-Aor-009885	Aspergillus oryzae	36.30	2.00e-45	175.00
IUUC-Ate-010315	Aspergillus terreus	35.23	8.00e-43	167.00
IUUC-Ame-010801	Astyanax mexicanus	46.07	7.00e-20	90.10
IUUC-Bgr-011982	Blumeria graminis	35.79	1.00e-43	169.00
IUUC-Bta-012804	Bos taurus	40.68	4.00e-58	218.00
IUUC-Bci-013891	Botrytis cinerea	32.75	8.00e-37	147.00
IUUC-Bdi-014328	Brachypodium distachyon	70.80	9.00e-110	389.00
IUUC-Bol-015446	Brassica oleracea	79.18	9.00e-129	452.00
IUUC-Bra-016862	Brassica rapa	78.50	3.00e-128	450.00
IUUC-Cel-018171	Caenorhabditis elegans	27.89	8.00e-31	126.00
IUUC-Cja-019335	Callithrix jacchus	40.68	3.00e-58	218.00
IUUC-Cfa-020138	Canis familiaris	40.30	6.00e-58	216.00
IUUC-Cpo-022109	Cavia porcellus	37.04	3.00e-47	181.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	41.94	8.00e-64	236.00
IUUC-Csa-023994	Chlorocebus sabaeus	40.68	3.00e-58	218.00
IUUC-Cho-024351	Choloepus hoffmanni	31.94	4.00e-34	137.00
IUUC-Cin-025801	Ciona intestinalis	39.02	4.00e-53	201.00
IUUC-Csv-025805	Ciona savignyi	39.77	8.00e-54	202.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	31.65	2.00e-36	145.00
IUUC-Cne-026868	Cryptococcus neoformans	33.95	1.00e-28	119.00
IUUC-Cme-027328	Cyanidioschyzon merolae	28.53	2.00e-23	102.00
IUUC-Dre-028085	Danio rerio	40.30	2.00e-58	218.00
IUUC-Dno-030099	Dasypus novemcinctus	40.68	3.00e-58	218.00
IUUC-Dor-030324	Dipodomys ordii	36.88	3.00e-48	184.00
IUUC-Dse-031314	Dothistroma septosporum	36.62	1.00e-46	179.00
IUUC-Dme-031926	Drosophila melanogaster	37.96	2.00e-51	195.00
IUUC-Ete-032569	Echinops telfairi	39.10	2.00e-53	201.00
IUUC-Eca-033502	Equus caballus	38.40	4.00e-52	197.00
IUUC-Eeu-034883	Erinaceus europaeus	34.62	2.00e-27	114.00
IUUC-Fca-035873	Felis catus	40.68	2.00e-58	218.00
IUUC-Fal-036921	Ficedula albicollis	40.30	1.00e-57	216.00
IUUC-Fox-037765	Fusarium oxysporum	29.54	1.00e-29	123.00
IUUC-Fso-038240	Fusarium solani	29.89	2.00e-30	125.00
IUUC-Gmo-038864	Gadus morhua	40.00	3.00e-59	221.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.89	7.00e-30	124.00
IUUC-Gga-040952	Gallus gallus	40.30	1.00e-57	216.00
IUUC-Gac-041677	Gasterosteus aculeatus	40.88	3.00e-62	231.00
IUUC-Gma-043061	Glycine max	86.11	5.00e-124	436.00
IUUC-Ggo-045591	Gorilla gorilla	40.68	2.00e-58	219.00
IUUC-Hsa-046860	Homo sapiens	40.68	3.00e-58	218.00
IUUC-Hvu-047410	Hordeum vulgare	72.30	9.00e-64	234.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	41.06	7.00e-59	220.00
IUUC-Lch-049410	Latimeria chalumnae	39.41	9.00e-36	142.00
IUUC-Lpe-051102	Leersia perrieri	76.36	3.00e-113	400.00
IUUC-Loc-052016	Lepisosteus oculatus	39.62	1.00e-48	186.00
IUUC-Lma-053157	Leptosphaeria maculans	35.46	2.00e-45	175.00
IUUC-Laf-054568	Loxodonta africana	40.68	4.00e-58	218.00
IUUC-Mcc-054613	Macaca mulatta	40.68	2.00e-58	218.00
IUUC-Mor-057104	Magnaporthe oryzae	30.39	6.00e-31	127.00
IUUC-Mtr-058445	Medicago truncatula	83.97	5.00e-139	486.00
IUUC-Mla-059038	Melampsora laricipopulina	31.62	2.00e-33	135.00
IUUC-Mga-059548	Meleagris gallopavo	39.21	7.00e-49	186.00
IUUC-Mvi-060520	Microbotryum violaceum	26.69	1.00e-18	86.70
IUUC-Mdo-062376	Monodelphis domestica	39.16	6.00e-57	214.00
IUUC-Mmu-063254	Mus musculus	40.68	1.00e-58	219.00
IUUC-Mac-065635	Musa acuminata	69.62	5.00e-116	409.00
IUUC-Mpu-066314	Mustela putorius furo	40.68	2.00e-58	218.00
IUUC-Mlu-067512	Myotis lucifugus	40.68	7.00e-59	220.00
IUUC-Nfi-068262	Neosartorya fischeri	36.30	1.00e-45	176.00
IUUC-Ncr-068872	Neurospora crassa	30.77	2.00e-32	132.00
IUUC-Nle-070118	Nomascus leucogenys	40.68	2.00e-58	218.00
IUUC-Opr-071228	Ochotona princeps	39.65	4.00e-50	190.00
IUUC-Ont-072600	Oreochromis niloticus	40.30	2.00e-60	225.00
IUUC-Oan-073584	Ornithorhynchus anatinus	38.77	3.00e-50	190.00
IUUC-Ocu-074542	Oryctolagus cuniculus	40.68	6.00e-59	220.00
IUUC-Oba-075923	Oryza barthii	74.56	9.00e-118	415.00
IUUC-Obr-076313	Oryza brachyantha	76.74	3.00e-112	397.00
IUUC-Ogl-076932	Oryza glaberrima	74.56	9.00e-118	415.00
IUUC-Ogu-078152	Oryza glumaepatula	74.56	9.00e-118	415.00
IUUC-Oin-079528	Oryza indica	74.56	9.00e-118	415.00
IUUC-Olo-080401	Oryza longistaminata	74.56	9.00e-118	415.00
IUUC-Ome-081553	Oryza meridionalis	74.22	2.00e-117	414.00
IUUC-Oni-082090	Oryza nivara	74.22	2.00e-117	414.00
IUUC-Opu-083583	Oryza punctata	77.91	2.00e-113	401.00
IUUC-Oru-084492	Oryza rufipogon	74.56	9.00e-118	415.00
IUUC-Osa-085383	Oryza sativa	74.56	9.00e-118	415.00
IUUC-Ola-086835	Oryzias latipes	40.68	2.00e-60	225.00
IUUC-Olu-087716	Ostreococcus lucimarinus	34.46	1.00e-41	162.00
IUUC-Oga-088886	Otolemur garnettii	41.06	3.00e-59	221.00
IUUC-Oar-090079	Ovis aries	40.68	2.00e-58	218.00
IUUC-Ptr-091457	Pan troglodytes	40.68	3.00e-58	218.00
IUUC-Pan-092317	Papio anubis	38.46	3.00e-34	137.00
IUUC-Psi-093129	Pelodiscus sinensis	37.74	2.00e-50	191.00
IUUC-Pma-094488	Petromyzon marinus	40.68	1.00e-60	225.00
IUUC-Pno-095049	Phaeosphaeria nodorum	35.79	3.00e-47	181.00
IUUC-Ppa-095341	Physcomitrella patens	62.28	5.00e-105	373.00
IUUC-Pfo-096286	Poecilia formosa	39.54	1.00e-59	222.00
IUUC-Pab-097765	Pongo abelii	40.68	3.00e-58	218.00
IUUC-Pca-100524	Procavia capensis	33.63	4.00e-35	140.00
IUUC-Ppe-101934	Prunus persica	85.37	2.00e-143	500.00
IUUC-Pva-102577	Pteropus vampyrus	41.06	6.00e-59	220.00
IUUC-Pgr-103521	Puccinia graminis	31.61	1.00e-33	136.00
IUUC-Pte-104304	Pyrenophora teres	36.14	7.00e-48	183.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	36.14	2.00e-47	182.00
IUUC-Rno-105717	Rattus norvegicus	41.06	4.00e-59	221.00
IUUC-Sha-107190	Sarcophilus harrisii	39.00	2.00e-54	206.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.30	5.00e-39	154.00
IUUC-Spo-108355	Schizosaccharomyces pombe	34.74	1.00e-41	162.00
IUUC-Smo-109374	Selaginella moellendorffii	66.42	4.00e-112	396.00
IUUC-Sit-110119	Setaria italica	75.47	5.00e-115	406.00
IUUC-Sly-111570	Solanum lycopersicum	79.65	7.00e-116	409.00
IUUC-Stu-112308	Solanum tuberosum	81.05	2.00e-128	451.00
IUUC-Sar-113515	Sorex araneus	45.78	3.00e-17	80.90
IUUC-Sbi-114605	Sorghum bicolor	75.09	2.00e-114	405.00
IUUC-Sre-114906	Sporisorium reilianum	35.04	3.00e-43	168.00
IUUC-Tgu-117087	Taeniopygia guttata	39.65	9.00e-49	186.00
IUUC-Tru-117700	Takifugu rubripes	41.44	1.00e-62	232.00
IUUC-Tni-120470	Tetraodon nigroviridis	41.51	2.00e-60	225.00
IUUC-Tca-121109	Theobroma cacao	86.76	8.00e-130	455.00
IUUC-Tre-122095	Trichoderma reesei	29.54	8.00e-30	124.00
IUUC-Tvi-122580	Trichoderma virens	29.54	1.00e-29	123.00
IUUC-Tae-125129	Triticum aestivum	72.66	6.00e-113	399.00
IUUC-Tur-126658	Triticum urartu	65.07	2.00e-102	364.00
IUUC-Tme-127043	Tuber melanosporum	36.97	7.00e-47	180.00
IUUC-Tbe-127927	Tupaia belangeri	40.68	2.00e-58	218.00
IUUC-Ttr-129231	Tursiops truncatus	40.68	1.00e-58	219.00
IUUC-Uma-129578	Ustilago maydis	35.53	3.00e-42	164.00
IUUC-Vda-129730	Verticillium dahliae	32.14	1.00e-35	143.00
IUUC-Vvi-130968	Vitis vinifera	85.92	2.00e-135	474.00
IUUC-Xtr-132203	Xenopus tropicalis	39.16	7.00e-56	209.00
IUUC-Xma-133972	Xiphophorus maculatus	39.54	1.00e-59	222.00
IUUC-Yli-134553	Yarrowia lipolytica	32.46	2.00e-32	132.00
IUUC-Zma-134941	Zea mays	73.58	1.00e-104	371.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence