iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT	Mentha
Post-translational Modifications (PTMs)
CPLM	dbPPT	dbPTM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	2.20e-41	140.9	1	76
ULD/UDP/UBQ/UBQ_PIM	3.00e-28	98.5	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ribosomal protein RSP27a-1 is part of the 40S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL AVLQFYKVDG SGKVQRLKKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCCCATAAT CTATGGACTT GTAACCCTAA TTTCCTTGAT ATAAAAGCTA TTGTTTTCAC 60
TCTCTGCGTT TTTTCTCAAA CAAGAAAATG CAGATCTTCG TGAAAACCCT AACGGGGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0022627--C:cytosolic small ribosomal subunit
GO:0005794--C:Golgi apparatus
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0009506--C:plasmodesma
GO:0046872--F:metal ion binding
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

ath:AT1G23410

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005441	Arabidopsis lyrata	98.72	5.00e-74	268.00
IUUC-Bol-016477	Brassica oleracea	98.08	3.00e-73	266.00
IUUC-Dor-030658	Dipodomys ordii	96.10	3.00e-39	152.00
IUUC-Eeu-035081	Erinaceus europaeus	73.83	7.00e-35	137.00
IUUC-Mvi-060484	Microbotryum violaceum	82.12	7.00e-60	222.00
IUUC-Pma-094647	Petromyzon marinus	77.69	2.00e-35	140.00
IUUC-Sre-114920	Sporisorium reilianum	77.78	2.00e-55	207.00
IUUC-Tbe-127851	Tupaia belangeri	96.10	2.00e-39	152.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence