iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.30e-07	31.7	175	244

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 3    vtvksldgs.eltlkvnpsdtVaeLKekiekklgip.pe.qqrLiykGkiL.eddktLadyglkdgstihllekks 74
           v++k l+++ el +   p dtV++LK      + +p  e q++Liy+G++L ++ +tL++++++++++ih+ ++ +
   Q: 175  VRLKFLNDTeELAVA-RPEDTVGTLKS-----KYFPgQEsQMKLIYQGRLLqDPARTLSSLNITNNCVIHCHRSPP 244
           667777777677777.9**********.....445543349**********999*****************98876 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MISRHLQNNL MSVDPVSSQA MELSDVTLIE GVGNEVMVVA GVVVLTLALV LAWLSTYVAD 60
SSNSQLLGTI VSAGDTSVLH LGHVDQLVNQ GTPEPTEHPH PSGGSDDKAE ETSDSGGDTT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGGGACTT CCTGTCCCGG ATGTTAACAG CTTCCGAGAA AAGCCGGAAG AGATCGGAGC 60
CTGGACAGAA TCCTGAATTG CCAGCCCCTC CCCTGACCCC TACGGAAAGA CGAGTACAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

SMART

SM00213--UBQ

Gene Ontology

GO:0016021--C:integral component of membrane

KEGG

rno:303567

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001840	Ailuropoda melanoleuca	80.43	1.00e-99	355.00
IUUC-Aca-005209	Anolis carolinensis	56.39	6.00e-80	290.00
IUUC-Ame-010717	Astyanax mexicanus	49.19	2.00e-47	182.00
IUUC-Bta-013468	Bos taurus	82.30	4.00e-105	374.00
IUUC-Cja-019294	Callithrix jacchus	83.39	1.00e-112	399.00
IUUC-Cfa-021109	Canis familiaris	79.19	3.00e-103	367.00
IUUC-Cpo-022549	Cavia porcellus	69.47	2.00e-94	338.00
IUUC-Csa-023126	Chlorocebus sabaeus	81.06	6.00e-103	367.00
IUUC-Dre-028755	Danio rerio	56.19	6.00e-48	184.00
IUUC-Dno-029940	Dasypus novemcinctus	82.92	1.00e-106	379.00
IUUC-Dor-030456	Dipodomys ordii	83.72	6.00e-125	439.00
IUUC-Ete-032609	Echinops telfairi	77.41	6.00e-86	310.00
IUUC-Eca-034423	Equus caballus	81.68	3.00e-107	381.00
IUUC-Eeu-035284	Erinaceus europaeus	80.13	1.00e-94	339.00
IUUC-Fca-035553	Felis catus	81.79	2.00e-95	342.00
IUUC-Gmo-038738	Gadus morhua	66.00	6.00e-43	167.00
IUUC-Gga-040627	Gallus gallus	51.33	1.00e-33	136.00
IUUC-Gac-042150	Gasterosteus aculeatus	58.20	2.00e-51	196.00
IUUC-Ggo-044895	Gorilla gorilla	82.20	2.00e-114	404.00
IUUC-Hsa-046457	Homo sapiens	82.87	4.00e-116	410.00
IUUC-Itr-048219	Ictidomys tridecemlineatus	85.67	9.00e-114	403.00
IUUC-Lch-050592	Latimeria chalumnae	51.25	6.00e-65	240.00
IUUC-Loc-052937	Lepisosteus oculatus	51.43	2.00e-64	238.00
IUUC-Laf-053558	Loxodonta africana	81.99	3.00e-114	404.00
IUUC-Mcc-055774	Macaca mulatta	78.82	4.00e-110	390.00
IUUC-Meu-056781	Macropus eugenii	74.75	3.00e-82	298.00
IUUC-Mga-059568	Meleagris gallopavo	53.85	3.00e-34	137.00
IUUC-Mmr-061734	Microcebus murinus	77.08	9.00e-92	329.00
IUUC-Mdo-062690	Monodelphis domestica	74.84	4.00e-85	307.00
IUUC-Mmu-063798	Mus musculus	93.06	3.00e-153	534.00
IUUC-Mpu-066140	Mustela putorius furo	81.79	2.00e-110	391.00
IUUC-Mlu-068075	Myotis lucifugus	81.07	4.00e-115	407.00
IUUC-Nle-069580	Nomascus leucogenys	81.93	8.00e-108	383.00
IUUC-Ont-071769	Oreochromis niloticus	60.26	2.00e-42	166.00
IUUC-Oan-072866	Ornithorhynchus anatinus	49.28	1.00e-49	189.00
IUUC-Ocu-074249	Oryctolagus cuniculus	79.50	1.00e-94	339.00
IUUC-Ola-086570	Oryzias latipes	64.56	2.00e-43	169.00
IUUC-Oga-088907	Otolemur garnettii	80.13	1.00e-93	335.00
IUUC-Oar-089602	Ovis aries	76.45	6.00e-92	330.00
IUUC-Ptr-091483	Pan troglodytes	82.87	4.00e-116	410.00
IUUC-Pan-092087	Papio anubis	78.82	5.00e-107	380.00
IUUC-Psi-093556	Pelodiscus sinensis	59.05	4.00e-77	281.00
IUUC-Pma-094352	Petromyzon marinus	52.29	1.00e-32	133.00
IUUC-Pfo-097094	Poecilia formosa	58.76	1.00e-45	176.00
IUUC-Pab-098314	Pongo abelii	82.24	1.00e-108	386.00
IUUC-Pca-100545	Procavia capensis	77.48	1.00e-98	352.00
IUUC-Sha-107335	Sarcophilus harrisii	73.87	4.00e-86	311.00
IUUC-Sar-113732	Sorex araneus	75.78	8.00e-80	289.00
IUUC-Tru-118017	Takifugu rubripes	46.06	1.00e-44	172.00
IUUC-Tni-119954	Tetraodon nigroviridis	44.51	6.00e-47	181.00
IUUC-Tbe-127521	Tupaia belangeri	82.06	1.00e-101	362.00
IUUC-Ttr-128289	Tursiops truncatus	80.13	2.00e-98	352.00
IUUC-Vpa-130574	Vicugna pacos	73.84	1.00e-80	292.00
IUUC-Xtr-131875	Xenopus tropicalis	45.81	3.00e-60	225.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence