iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-027763

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Lysine (K)-specific demethylase 2Ab

Genbank Nucleotide ID

CT955967

Gene Name

kdm2ab

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000078133.3	ENSDART00000111839.3	ENSDARP00000099910.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	9.80e-10	39.4	567	626

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedek......slveCekCrewfHpaClkls....veeelpnsekwiCpkCrs 53
           +vC +C+eg ++++      +l+eC++C ++ Hp+C k +    ++++lp++  w+CpkC +
   Q: 567  AVCVICKEGNQESDdtesvqMLMECSECAQITHPECIKVPgegvINKDLPSC--WECPKCVQ 626
           79******999885566788********************************..******75 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MSEAKSRYSK RLRSGTRRRY QDDGISDDEI EGKRSFDLEE KLQSDRYNSN LVKIMDGKDF 60
TLEYIQREGL RDPIIFKKAD GLGIKMPDPD FSVSDVKLFV GSRRMIDVMD AATQKGIEMS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCATGACAA TCTGAAAATG GCGGATGAAA GCGGATTGAT TTAACTTTAT CGAACAAAAA 60
TAAGAATATC AAGTGAAGAA CGACACCATC GCACAGGATG AGTTTGCAGC TCCGCGGGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001810--F-box_dom
IPR003347--JmjC_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp
IPR019786--Zinc_finger_PHD-type_CS
IPR002857--Znf_CXXC
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51184--JMJC
PS51058--ZF_CXXC
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF12937--F-box-like
PF16866--PHD_4
PF02008--zf-CXXC

SMART

SM00558--JmjC
SM00367--LRR_CC
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cel-018303	Caenorhabditis elegans	44.58	2.00e-79	291.00
IUUC-Cin-025140	Ciona intestinalis	49.80	6.00e-128	451.00
IUUC-Csv-025861	Ciona savignyi	49.19	7.00e-144	504.00
IUUC-Eeu-035273	Erinaceus europaeus	51.05	6.00e-175	608.00
IUUC-Gmo-038932	Gadus morhua	73.40	0.00e+00	903.00
IUUC-Gac-041674	Gasterosteus aculeatus	70.32	0.00e+00	874.00
IUUC-Laf-053939	Loxodonta africana	60.45	0.00e+00	758.00
IUUC-Mlu-067228	Myotis lucifugus	80.48	3.00e-167	583.00
IUUC-Oan-073668	Ornithorhynchus anatinus	63.98	4.00e-154	537.00
IUUC-Ola-087196	Oryzias latipes	71.22	0.00e+00	882.00
IUUC-Psi-093114	Pelodiscus sinensis	77.75	1.00e-174	606.00
IUUC-Pfo-096512	Poecilia formosa	68.54	0.00e+00	954.00
IUUC-Pgr-103554	Puccinia graminis	44.16	2.00e-74	273.00
IUUC-Rno-105814	Rattus norvegicus	61.00	0.00e+00	777.00
IUUC-Ssc-115432	Sus scrofa	80.81	6.00e-165	573.00
IUUC-Tni-120020	Tetraodon nigroviridis	61.45	0.00e+00	877.00
IUUC-Tbe-127450	Tupaia belangeri	66.67	6.00e-138	485.00
IUUC-Xtr-131839	Xenopus tropicalis	75.88	3.00e-165	575.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence