iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028043

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Chromodomain helicase DNA-binding protein 3

Genbank Nucleotide ID

BX927371

Gene Name

chd3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000021405.11	ENSDART00000156717.1	ENSDARP00000127601.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.20e-16	61.6	384	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl+++  e+ p+ + w Cp C++
   Q: 384  DYCEVCQQGGE----IILCDTCPRAYHLVCLEPE-LEKAPEGK-WSCPHCEK 429
           79*********....9******************.*******7.******86 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MSSLLRSCEE DEGTAVNSEG GDFDEEEEDD GDLDENASDI NSPAAPRETA ARAAPDDGDD 60
IGEASDRDNL GKKKRGPKKK KETKKKDKEK EGKIAKARKR KKIESDIERD SEPDYAMNSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTTTCTCTG CCTTGTAGTG TAAAATATTC CAAAACGCCC CCCACTTTTT GTGTGTCGAT 60
TTGAATATTA CATAAATATC ATAATTTGGA AGGAATACAC TTTTAGATCT CGCGGAACGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0051297--P:centrosome organization
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

KEGG

dre:568230

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005645	Arabidopsis lyrata	39.87	7.00e-154	539.00
IUUC-Ath-007406	Arabidopsis thaliana	41.18	4.00e-159	556.00
IUUC-Ame-011352	Astyanax mexicanus	94.63	0.00e+00	2440.00
IUUC-Bol-016073	Brassica oleracea	41.02	1.00e-157	551.00
IUUC-Dor-030167	Dipodomys ordii	77.34	0.00e+00	2029.00
IUUC-Eeu-034777	Erinaceus europaeus	73.23	0.00e+00	1830.00
IUUC-Gmo-038957	Gadus morhua	84.24	0.00e+00	1554.00
IUUC-Gac-041375	Gasterosteus aculeatus	77.74	0.00e+00	2255.00
IUUC-Lch-050343	Latimeria chalumnae	78.54	0.00e+00	2006.00
IUUC-Loc-052383	Lepisosteus oculatus	84.37	0.00e+00	2210.00
IUUC-Meu-056292	Macropus eugenii	68.10	0.00e+00	934.00
IUUC-Mdo-062971	Monodelphis domestica	78.54	0.00e+00	1947.00
IUUC-Nle-069842	Nomascus leucogenys	79.26	0.00e+00	2010.00
IUUC-Ont-072235	Oreochromis niloticus	85.33	0.00e+00	2332.00
IUUC-Ocu-074438	Oryctolagus cuniculus	69.99	0.00e+00	2315.00
IUUC-Ola-086491	Oryzias latipes	72.02	0.00e+00	2030.00
IUUC-Pfo-096265	Poecilia formosa	84.37	0.00e+00	2289.00
IUUC-Sha-107233	Sarcophilus harrisii	78.22	0.00e+00	1995.00
IUUC-Tru-118648	Takifugu rubripes	85.94	0.00e+00	2331.00
IUUC-Tni-120039	Tetraodon nigroviridis	83.92	0.00e+00	2300.00
IUUC-Tbe-128117	Tupaia belangeri	78.35	0.00e+00	1025.00
IUUC-Vpa-130209	Vicugna pacos	90.06	4.00e-167	583.00
IUUC-Xtr-132833	Xenopus tropicalis	68.41	0.00e+00	2304.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence