iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppa-095341

Ensembl Protein ID

PP1S31_343V6.1

UniProt Accession

A9RVP0; A9RVP0_PHYPA

Genbank Protein ID

EDQ77099.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

DS544920

Gene Name

PHYPADRAFT_120144

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S31_343V6	PP1S31_343V6.1	PP1S31_343V6.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	41.57	6.00e-63	238.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Physcomitrella patens

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAMGRTVLHM PSGHTGVVAK LHPTVLFNIC DSFIRRNDQQ ERVIGTLLGS ISADGTVEIR 60
NSYAVPHSEQ ADQVAVDIDY NRTMYELHQR VNPKEVVVGW YSTGSSLSPS DTLIHDFYGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAGTCTCCC TCTTTGCTTT CGCATGTGCC AGCTCCCGCG AGTAGGCTCT GGCGCAAGGC 60
CCCCGACACC ACCATCACCA CCACACTGCG GTACTCACCA TGGCCATGGG ACGGACTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
GO:0006413--P:translational initiation

KEGG

ppp:PHYPADRAFT_120144

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	52.74	5.00e-83	300.00
IUUC-Aml-001527	Ailuropoda melanoleuca	41.51	5.00e-58	217.00
IUUC-Atr-002686	Amborella trichopoda	68.31	2.00e-98	351.00
IUUC-Apl-003977	Anas platyrhynchos	38.91	3.00e-45	174.00
IUUC-Aca-004335	Anolis carolinensis	40.82	2.00e-57	214.00
IUUC-Aly-005945	Arabidopsis lyrata	61.89	2.00e-91	327.00
IUUC-Ath-007045	Arabidopsis thaliana	61.51	5.00e-90	323.00
IUUC-Acl-008365	Aspergillus clavatus	37.50	2.00e-44	172.00
IUUC-Afl-008742	Aspergillus flavus	36.76	7.00e-43	167.00
IUUC-Afu-009030	Aspergillus fumigatus	36.76	7.00e-44	170.00
IUUC-Ani-009212	Aspergillus nidulans	37.13	2.00e-43	168.00
IUUC-Ang-009712	Aspergillus niger	38.24	1.00e-44	172.00
IUUC-Aor-009885	Aspergillus oryzae	36.76	6.00e-44	170.00
IUUC-Ate-010315	Aspergillus terreus	37.13	1.00e-42	166.00
IUUC-Ame-010801	Astyanax mexicanus	31.63	3.00e-26	111.00
IUUC-Bgr-011982	Blumeria graminis	33.70	5.00e-39	154.00
IUUC-Bta-012804	Bos taurus	41.20	5.00e-58	217.00
IUUC-Bci-013891	Botrytis cinerea	33.09	1.00e-34	139.00
IUUC-Bdi-014328	Brachypodium distachyon	54.51	2.00e-84	304.00
IUUC-Bol-015446	Brassica oleracea	60.82	6.00e-92	329.00
IUUC-Bra-016862	Brassica rapa	60.45	2.00e-91	327.00
IUUC-Cel-018171	Caenorhabditis elegans	27.30	3.00e-26	111.00
IUUC-Cja-019335	Callithrix jacchus	41.57	2.00e-58	218.00
IUUC-Cfa-020138	Canis familiaris	41.13	8.00e-58	216.00
IUUC-Cpo-022109	Cavia porcellus	37.50	9.00e-46	176.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	44.06	2.00e-66	244.00
IUUC-Csa-023994	Chlorocebus sabaeus	41.57	1.00e-58	219.00
IUUC-Cho-024351	Choloepus hoffmanni	35.75	2.00e-35	142.00
IUUC-Cin-025801	Ciona intestinalis	40.30	5.00e-52	197.00
IUUC-Csv-025805	Ciona savignyi	40.30	8.00e-51	192.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	30.10	8.00e-34	136.00
IUUC-Cne-026868	Cryptococcus neoformans	30.22	2.00e-21	95.50
IUUC-Cme-027328	Cyanidioschyzon merolae	26.10	8.00e-21	93.60
IUUC-Dre-028085	Danio rerio	42.70	2.00e-59	221.00
IUUC-Dno-030099	Dasypus novemcinctus	41.51	6.00e-58	217.00
IUUC-Dor-030324	Dipodomys ordii	38.11	3.00e-48	184.00
IUUC-Dse-031314	Dothistroma septosporum	40.43	6.00e-50	190.00
IUUC-Dme-031926	Drosophila melanogaster	38.58	1.00e-50	192.00
IUUC-Ete-032569	Echinops telfairi	40.07	4.00e-54	203.00
IUUC-Eca-033502	Equus caballus	38.69	1.00e-52	199.00
IUUC-Eeu-034883	Erinaceus europaeus	32.97	9.00e-22	95.50
IUUC-Fca-035873	Felis catus	41.51	4.00e-58	218.00
IUUC-Fal-036921	Ficedula albicollis	41.57	2.00e-58	218.00
IUUC-Fox-037765	Fusarium oxysporum	29.71	7.00e-29	120.00
IUUC-Fso-038240	Fusarium solani	30.07	3.00e-30	124.00
IUUC-Gmo-038864	Gadus morhua	43.07	1.00e-60	225.00
IUUC-Ggr-039862	Gaeumannomyces graminis	31.05	4.00e-30	124.00
IUUC-Gga-040952	Gallus gallus	41.57	2.00e-58	218.00
IUUC-Gac-041677	Gasterosteus aculeatus	42.96	3.00e-62	231.00
IUUC-Gma-043061	Glycine max	60.90	7.00e-85	306.00
IUUC-Ggo-045591	Gorilla gorilla	41.57	1.00e-58	219.00
IUUC-Hsa-046860	Homo sapiens	41.57	1.00e-58	219.00
IUUC-Hvu-047410	Hordeum vulgare	55.78	9.00e-49	184.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	41.89	1.00e-58	219.00
IUUC-Lch-049410	Latimeria chalumnae	39.61	5.00e-40	156.00
IUUC-Lpe-051102	Leersia perrieri	60.85	9.00e-91	325.00
IUUC-Loc-052016	Lepisosteus oculatus	38.66	6.00e-46	176.00
IUUC-Lma-053157	Leptosphaeria maculans	36.63	7.00e-45	173.00
IUUC-Laf-054568	Loxodonta africana	41.57	2.00e-58	218.00
IUUC-Mcc-054613	Macaca mulatta	41.57	1.00e-58	219.00
IUUC-Meu-056832	Macropus eugenii	27.54	2.00e-18	84.70
IUUC-Mor-057104	Magnaporthe oryzae	30.07	7.00e-32	130.00
IUUC-Mtr-058445	Medicago truncatula	60.15	2.00e-95	341.00
IUUC-Mla-059038	Melampsora laricipopulina	33.56	9.00e-35	139.00
IUUC-Mga-059548	Meleagris gallopavo	39.21	4.00e-47	180.00
IUUC-Mvi-060520	Microbotryum violaceum	32.20	3.00e-22	98.60
IUUC-Mdo-062376	Monodelphis domestica	40.00	1.00e-55	209.00
IUUC-Mmu-063254	Mus musculus	41.51	4.00e-58	217.00
IUUC-Mac-065635	Musa acuminata	57.64	8.00e-88	315.00
IUUC-Mpu-066314	Mustela putorius furo	41.51	3.00e-58	218.00
IUUC-Mlu-067512	Myotis lucifugus	40.75	1.00e-57	216.00
IUUC-Nfi-068262	Neosartorya fischeri	36.76	8.00e-44	170.00
IUUC-Ncr-068872	Neurospora crassa	30.03	3.00e-32	131.00
IUUC-Nle-070118	Nomascus leucogenys	41.51	4.00e-58	217.00
IUUC-Opr-071228	Ochotona princeps	39.65	4.00e-47	180.00
IUUC-Ont-072600	Oreochromis niloticus	43.07	8.00e-62	229.00
IUUC-Oan-073584	Ornithorhynchus anatinus	38.33	1.00e-46	178.00
IUUC-Ocu-074542	Oryctolagus cuniculus	41.13	2.00e-57	215.00
IUUC-Oba-075923	Oryza barthii	57.91	1.00e-90	325.00
IUUC-Obr-076313	Oryza brachyantha	61.24	2.00e-90	324.00
IUUC-Ogl-076932	Oryza glaberrima	57.91	1.00e-90	325.00
IUUC-Ogu-078152	Oryza glumaepatula	57.91	1.00e-90	325.00
IUUC-Oin-079528	Oryza indica	57.91	1.00e-90	325.00
IUUC-Olo-080401	Oryza longistaminata	57.91	1.00e-90	325.00
IUUC-Ome-081553	Oryza meridionalis	57.55	3.00e-90	323.00
IUUC-Oni-082090	Oryza nivara	57.91	1.00e-90	325.00
IUUC-Opu-083583	Oryza punctata	60.47	2.00e-89	321.00
IUUC-Oru-084492	Oryza rufipogon	57.91	1.00e-90	325.00
IUUC-Osa-085383	Oryza sativa	57.91	1.00e-90	325.00
IUUC-Ola-086835	Oryzias latipes	42.32	9.00e-61	226.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.70	2.00e-40	158.00
IUUC-Oga-088886	Otolemur garnettii	41.89	5.00e-59	220.00
IUUC-Oar-090079	Ovis aries	41.20	4.00e-58	217.00
IUUC-Ptr-091457	Pan troglodytes	41.57	1.00e-58	219.00
IUUC-Pan-092317	Papio anubis	37.91	3.00e-30	124.00
IUUC-Psi-093129	Pelodiscus sinensis	38.77	5.00e-47	180.00
IUUC-Pma-094488	Petromyzon marinus	38.79	1.00e-57	215.00
IUUC-Pno-095049	Phaeosphaeria nodorum	35.35	3.00e-46	177.00
IUUC-Pfo-096286	Poecilia formosa	42.70	5.00e-62	230.00
IUUC-Pab-097765	Pongo abelii	41.57	1.00e-58	219.00
IUUC-Pop-099131	Populus trichocarpa	62.28	8.00e-95	338.00
IUUC-Pca-100524	Procavia capensis	32.16	2.00e-28	117.00
IUUC-Ppe-101934	Prunus persica	63.91	7.00e-100	355.00
IUUC-Pva-102577	Pteropus vampyrus	41.51	2.00e-58	219.00
IUUC-Pgr-103521	Puccinia graminis	35.85	1.00e-36	145.00
IUUC-Pte-104304	Pyrenophora teres	37.73	5.00e-47	180.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	37.73	6.00e-47	180.00
IUUC-Rno-105717	Rattus norvegicus	41.51	4.00e-58	217.00
IUUC-Sha-107190	Sarcophilus harrisii	39.53	2.00e-52	198.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	35.77	5.00e-40	157.00
IUUC-Spo-108355	Schizosaccharomyces pombe	34.45	5.00e-40	157.00
IUUC-Smo-109374	Selaginella moellendorffii	74.55	2.00e-122	430.00
IUUC-Sit-110119	Setaria italica	60.00	6.00e-92	329.00
IUUC-Sly-111570	Solanum lycopersicum	60.36	5.00e-87	313.00
IUUC-Stu-112308	Solanum tuberosum	60.71	4.00e-93	333.00
IUUC-Sar-113515	Sorex araneus	35.42	2.00e-14	70.90
IUUC-Sbi-114605	Sorghum bicolor	60.38	2.00e-92	332.00
IUUC-Sre-114906	Sporisorium reilianum	40.14	2.00e-46	178.00
IUUC-Tgu-117087	Taeniopygia guttata	39.13	8.00e-47	179.00
IUUC-Tru-117700	Takifugu rubripes	43.45	7.00e-63	233.00
IUUC-Tni-120470	Tetraodon nigroviridis	42.70	5.00e-61	226.00
IUUC-Tca-121109	Theobroma cacao	64.29	3.00e-88	317.00
IUUC-Tre-122095	Trichoderma reesei	29.00	7.00e-30	124.00
IUUC-Tvi-122580	Trichoderma virens	29.00	3.00e-29	121.00
IUUC-Tae-125129	Triticum aestivum	58.27	2.00e-89	321.00
IUUC-Tur-126658	Triticum urartu	50.69	4.00e-80	290.00
IUUC-Tme-127043	Tuber melanosporum	37.45	4.00e-44	171.00
IUUC-Tbe-127927	Tupaia belangeri	41.51	4.00e-58	218.00
IUUC-Ttr-129231	Tursiops truncatus	41.13	1.00e-57	216.00
IUUC-Uma-129578	Ustilago maydis	39.44	2.00e-45	175.00
IUUC-Vda-129730	Verticillium dahliae	30.64	3.00e-34	138.00
IUUC-Vvi-130968	Vitis vinifera	65.34	2.00e-100	358.00
IUUC-Xtr-132203	Xenopus tropicalis	40.45	2.00e-56	211.00
IUUC-Xma-133972	Xiphophorus maculatus	42.70	2.00e-61	228.00
IUUC-Yli-134553	Yarrowia lipolytica	35.38	6.00e-34	137.00
IUUC-Zma-134941	Zea mays	59.25	1.00e-83	301.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence